Ss1.1-Thy1-THY010027B12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGCTCTCAGAAGCCATGGACAAGGAGTATGTGGGTTTCGCCGCCCTCCCCAACCAGCTG CACCGCAAGTCCGTCAAGAAGGGGTTTGACTTCACACTCATGGTGGCAGGGGAGTCAGGC CTGGGAAAATCCACCCTCATCAACAGCCTGTTTCTCACCAACCTCTATGAGGATCGGCAA ATCCCAGAAGCCAGTGCTCGCTTGACACAAACGCTGACCATCGAGCGCCGGGGTGTGGAG ATCGAGGAGGGGGGCATTAAGGTGAAGCTGACCTTGGTGGACACACCTGGCTTTGGAGAC TCAGTGGACTGTTCAGACTGCTGGCTGCCTGTGGTGCGCTTCATTGAGGAGCAGTTCGAG CAGTACCTTCGCGATGAGAGTGGCCTGAACCGGAAGAACATCCAGGATTCCCGTGTCCAC TGCTGCCTCTACTTCATCTCACCCTTCGGCCGAGGGCTCCGGCCCCTAGATGTGGCCTTC CTCCGGGCGGTGCACGACAAAGTCAATATCATCCCCGTCATTGGCAAAGCAGATGCCCTG ATGCCGAAGGAAACACAGGCCCTCAAGCAGAAGATTCGGGACCAGCTGAAGGAGGAGGAG ATCAACATCTACCAGTTCCCCGACTGTGACTCTGATGAGGATGAAGACTTCAAGAGGCAG GATGCGGAGATGAAGGAGAGCATCCCTTTCGCTGTCGTTGGTTCATGCGAAGTAGTGAGG GACGGGACCCGACCAGTGAGGGGACGCCGCTACTCCTGGGGCACAGTGGAGGTGGAAAAC CCACATCACTGCGATTTCCTGAACTTGCGACGGATGCTGGTGCAGACACACCTGCAGGAC CTGAAGGAGGTGACGCATGATCTGCTTTATGAGGGCTACCGGGCCAGCTGCTTACAGAGC CTGGCCCGGCCTGGGGCGCGTGACAGAGCCAGCCGTAGTAAACTTTCGCGCCAGAGCGCC ACAGAGATTCCGCTGCCCATGCTGCCTCTAGCAGACACGGAGAAGCTGATCCGTGAGAAA GACGAAGAGCTGCGCCGCATGCAGGAGATGCTGGAGAAGATGCAGGCCCAGATGCAGCAG AGCCAGGCGCAGAGCGAGCAGTCGGACGCCCTCTGAGGCTCCCGTCCCCGCCCTACTTTA CCTCGCCTCCGCCTTCAGTTCGTCTCTAGTCCAATCCCCGTGTCCCAGGCTGCCTGGCGC CCAGTCCGCGAGCCTCAGTCTGTAAGGCCCGCCTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGCTCTCAGAAGCCATGGACAAGGAGTATGTGGGTTTCGCCGCCCTCCCCAACCAGCTG CACCGCAAGTCCGTCAAGAAGGGGTTTGACTTCACACTCATGGTGGCAGGGGAGTCAGGC CTGGGAAAATCCACCCTCATCAACAGCCTGTTTCTCACCAACCTCTATGAGGATCGGCAA ATCCCAGAAGCCAGTGCTCGCTTGACACAAACGCTGACCATCGAGCGCCGGGGTGTGGAG ATCGAGGAGGGGGGCATTAAGGTGAAGCTGACCTTGGTGGACACACCTGGCTTTGGAGAC TCAGTGGACTGTTCAGACTGCTGGCTGCCTGTGGTGCGCTTCATTGAGGAGCAGTTCGAG CAGTACCTTCGCGATGAGAGTGGCCTGAACCGGAAGAACATCCAGGATTCCCGTGTCCAC TGCTGCCTCTACTTCATCTCACCCTTCGGCCGAGGGCTCCGGCCCCTAGATGTGGCCTTC CTCCGGGCGGTGCACGACAAAGTCAATATCATCCCCGTCATTGGCAAAGCAGATGCCCTG ATGCCGAAGGAAACACAGGCCCTCAAGCAGAAGATTCGGGACCAGCTGAAGGAGGAGGAG ATCAACATCTACCAGTTCCCCGACTGTGACTCTGATGAGGATGAAGACTTCAAGAGGCAG GATGCGGAGATGAAGGAGAGCATCCCTTTCGCTGTCGTTGGTTCATGCGAAGTAGTGAGG GACGGGACCCGACCAGTGAGGGGACGCCGCTACTCCTGGGGCACAGTGGAGGTGGAAAAC CCACATCACTGCGATTTCCTGAACTTGCGACGGATGCTGGTGCAGACACACCTGCAGGAC CTGAAGGAGGTGACGCATGATCTGCTTTATGAGGGCTACCGGGCCAGCTGCTTACAGAGC CTGGCCCGGCCTGGGGCGCGTGACAGAGCCAGCCGTAGTAAACTTTCGCGCCAGAGCGCC ACAGAGATTCCGCTGCCCATGCTGCCTCTAGCAGACACGGAGAAGCTGATCCGTGAGAAA GACGAAGAGCTGCGCCGCATGCAGGAGATGCTGGAGAAGATGCAGGCCCAGATGCAGCAG AGCCAGGCGCAGAGCGAGCAGTCGGACGCCCTCTGAGGCTCCCGTCCCCGCCCTACTTTA CCTCGCCTCCGCCTTCAGTTCGTCTCTAGTCCAATCCCCGTGTCCCAGGCTGCCTGGCGC CCAGTCCGCGAGCCTCAGTCTGTAAGGCCCGCCTTT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 320-456, gnl|bosTau2|chr25 (24412018-24412154) | |
| 320-456, gnl|canFam2|chr6 (20729456-20729370) | |
| 320-456, gnl|danRer3|chr19 (66963006-66962920) | |
| 320-456, gnl|dasNov1|scaffold_30596 (14624-14710) | |
| 320-456, gnl|echTel1|scaffold_250891 (468-554) | |
| 320-456, gnl|fr1|chrUn (84881370-84881284) | |
| 320-456, gnl|galGal2|chr15 (752770-752684) | |
| 320-456, gnl|hg17|chr16 (30300160-30300246) | |
| 320-456, gnl|Hg17|chr16 (30300296-30300160) | |
| 320-456, gnl|loxAfr1|scaffold_36712 (33190-33276) | |
| 320-456, gnl|mm7|chr7 (123313458-123313544) | |
| 320-456, gnl|Mm7|chr7 (123313594-123313458) | |
| 320-456, gnl|monDom2|scaffold_56 (4490662-4490576) | |
| 320-456, gnl|oryCun1|scaffold_207737 (134212-134126) | |
| 320-456, gnl|panTro1|chr18 (31066918-31067004) | |
| 320-456, gnl|rheMac2|chr20 (28441699-28441785) | |
| 320-456, gnl|rn3|chr1 (186626822-186626908) | |
| 320-456, gnl|tetNig1|chr10 (10264459-10264545) | |
| 320-456, gnl|xenTro1|scaffold_118 (577239-577153) | |
| 457-573, gnl|bosTau2|chr25 (24412251-24412367) | |
| 457-573, gnl|Hg17|chr16 (30300065-30299949) | |
| 457-573, gnl|Mm7|chr7 (123313364-123313248) | |
| 772-938, gnl|bosTau2|chr25 (24413502-24413668) | |
| 772-938, gnl|Hg17|chr16 (30298006-30297840) | |
| 772-938, gnl|Mm7|chr7 (123312005-123311839) | |
| 1023-1236, gnl|bosTau2|chr25 (24414089-24414301) | |
| 1023-1236, gnl|Hg17|chr16 (30297349-30297145) | |
| 1023-1236, gnl|Mm7|chr7 (123311409-123311204) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 320-456, gnl|bosTau2|chr25 (24412018-24412154) | |
| 320-456, gnl|canFam2|chr6 (20729456-20729370) | |
| 320-456, gnl|danRer3|chr19 (66963006-66962920) | |
| 320-456, gnl|dasNov1|scaffold_30596 (14624-14710) | |
| 320-456, gnl|echTel1|scaffold_250891 (468-554) | |
| 320-456, gnl|fr1|chrUn (84881370-84881284) | |
| 320-456, gnl|galGal2|chr15 (752770-752684) | |
| 320-456, gnl|hg17|chr16 (30300160-30300246) | |
| 320-456, gnl|Hg17|chr16 (30300296-30300160) | |
| 320-456, gnl|loxAfr1|scaffold_36712 (33190-33276) | |
| 320-456, gnl|mm7|chr7 (123313458-123313544) | |
| 320-456, gnl|Mm7|chr7 (123313594-123313458) | |
| 320-456, gnl|monDom2|scaffold_56 (4490662-4490576) | |
| 320-456, gnl|oryCun1|scaffold_207737 (134212-134126) | |
| 320-456, gnl|panTro1|chr18 (31066918-31067004) | |
| 320-456, gnl|rheMac2|chr20 (28441699-28441785) | |
| 320-456, gnl|rn3|chr1 (186626822-186626908) | |
| 320-456, gnl|tetNig1|chr10 (10264459-10264545) | |
| 320-456, gnl|xenTro1|scaffold_118 (577239-577153) | |
| 457-573, gnl|bosTau2|chr25 (24412251-24412367) | |
| 457-573, gnl|Hg17|chr16 (30300065-30299949) | |
| 457-573, gnl|Mm7|chr7 (123313364-123313248) | |
| 772-938, gnl|bosTau2|chr25 (24413502-24413668) | |
| 772-938, gnl|Hg17|chr16 (30298006-30297840) | |
| 772-938, gnl|Mm7|chr7 (123312005-123311839) | |
| 1023-1236, gnl|bosTau2|chr25 (24414089-24414301) | |
| 1023-1236, gnl|Hg17|chr16 (30297349-30297145) | |
| 1023-1236, gnl|Mm7|chr7 (123311409-123311204) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| cag (0.302389) | |
| lnt (0.284616) | |
| med (0.232504) | |
| fty (0.17584) | |
| ill (0.175593) | |
| cly (0.120642) | |
| cty (0.10408) | |
| jej (0.0989218) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cag (0.302389) | |
| lnt (0.284616) | |
| med (0.232504) | |
| fty (0.17584) | |
| ill (0.175593) | |
| cly (0.120642) | |
| cty (0.10408) | |
| jej (0.0989218) |