Non-Coding RNA Search

Ss1.1-Thy1-THY010027C11.5

Sequence:


               
               AGAAGCCCTGTTCTTCCGGGAAAATGGCGACTCCCGCTCATTCGCCGGAGTCCCTGCCCG
CCGCGGATCCGGCGCCCGCAGCGGGAGCTGTCGCGGACGTCGAGTGCCCGCCGCCTCGCC
AGCCTCAGCTCCCGCAGAATGTCCTCGCTGCCTCGCGGCTTCGAGCCCCAACCTCCCGAG
GACTTGGGTCAGCGGAGTTTGGCAGAGCTGCGGGAAACGTTGAAGCGCCAGGAGAGACTT
TTGCGCAACGTAAAATTCATTTGCAAATTGCCCGACAAAGGTAGAAAGATCATAGACTCT
GTCGCCAAACTGAAAGCTGCCATTGAAGAACATGAAGAAGTTAGAGGGGGAAGTGACCTC
TTTCATCCCGTTAATTTAGACTGTAAGTGGAGGACAAAAGCAAGTACAGTTGTTGATGTG
GCAACAGATACGGCCCAGAATTCTGACCAGATACTTGATACTTCATCACTAGTTCCTGGC
TGCTCCTCTATAGCTACCATCACGTCGTCTCAGACAACCTCACAGCGGGGCCTGGTCCAT
CCTACTCATGGAGGCAATGCTGAGGCCCCTGAGCCCGAACACTCAGTGAGCAAGTGCCCA
CCTTCCAGCAGCAGAGCCGCTGTGCCTTCCTCATCTGAAGCCAGTGAGCGACTCCCTCAG
CATCACATTTCAAGTCAAGTAGAGGATCATTCTAGCAGCTCGGAGAACCTGTTTATTGAT
AGATTGCAAAGGATCACTATTACAGACCCTGGTGAACATCACTCAGAAGGAAACCCGAGT
CTGGAGAACTTGACTGGCCTTTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAGCCCTGTTCTTCCGGGAAAATGGCGACTCCCGCTCATTCGCCGGAGTCCCTGCCCG
CCGCGGATCCGGCGCCCGCAGCGGGAGCTGTCGCGGACGTCGAGTGCCCGCCGCCTCGCC
AGCCTCAGCTCCCGCAGAATGTCCTCGCTGCCTCGCGGCTTCGAGCCCCAACCTCCCGAG
GACTTGGGTCAGCGGAGTTTGGCAGAGCTGCGGGAAACGTTGAAGCGCCAGGAGAGACTT
TTGCGCAACGTAAAATTCATTTGCAAATTGCCCGACAAAGGTAGAAAGATCATAGACTCT
GTCGCCAAACTGAAAGCTGCCATTGAAGAACATGAAGAAGTTAGAGGGGGAAGTGACCTC
TTTCATCCCGTTAATTTAGACTGTAAGTGGAGGACAAAAGCAAGTACAGTTGTTGATGTG
GCAACAGATACGGCCCAGAATTCTGACCAGATACTTGATACTTCATCACTAGTTCCTGGC
TGCTCCTCTATAGCTACCATCACGTCGTCTCAGACAACCTCACAGCGGGGCCTGGTCCAT
CCTACTCATGGAGGCAATGCTGAGGCCCCTGAGCCCGAACACTCAGTGAGCAAGTGCCCA
CCTTCCAGCAGCAGAGCCGCTGTGCCTTCCTCATCTGAAGCCAGTGAGCGACTCCCTCAG
CATCACATTTCAAGTCAAGTAGAGGATCATTCTAGCAGCTCGGAGAACCTGTTTATTGAT
AGATTGCAAAGGATCACTATTACAGACCCTGGTGAACATCACTCAGAAGGAAACCCGAGT
CTGGAGAACTTGACTGGCCTTTGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9BZD3_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9BZD3_HUMAN

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               1-251, gnl|bosTau2|chr10 (34641047-34640797)
               

               
               1-251, gnl|canFam2|chr30 (25857556-25857804)
               

               
               1-251, gnl|dasNov1|scaffold_24829 (2415-2653)
               

               
               1-251, gnl|echTel1|scaffold_312756 (225532-225294)
               

               
               1-251, gnl|Hg17|chr15 (55786194-55786445)
               

               
               1-251, gnl|hg17|chr4 (68732891-68733141)
               

               
               1-251, gnl|loxAfr1|scaffold_209135 (929-676)
               

               
               1-251, gnl|mm7|chr9 (71520776-71520534)
               

               
               1-251, gnl|Mm7|chr9 (71520777-71520533)
               

               
               1-251, gnl|monDom2|scaffold_12 (35606649-35606878)
               

               
               1-251, gnl|oryCun1|scaffold_201726 (105637-105389)
               

               
               1-251, gnl|panTro1|chr3 (77768134-77767885)
               

               
               1-251, gnl|rheMac2|chr7 (36038307-36038545)
               

               
               1-251, gnl|rn3|chr8 (75973739-75973497)
               


               
               252-804, gnl|bosTau2|chr10 (34639021-34638466)
               

               
               252-804, gnl|Hg17|chr15 (55788204-55788756)
               

               
               252-804, gnl|Mm7|chr9 (71518654-71518108)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-251, gnl|bosTau2|chr10 (34641047-34640797)
               

               
               1-251, gnl|canFam2|chr30 (25857556-25857804)
               

               
               1-251, gnl|dasNov1|scaffold_24829 (2415-2653)
               

               
               1-251, gnl|echTel1|scaffold_312756 (225532-225294)
               

               
               1-251, gnl|Hg17|chr15 (55786194-55786445)
               

               
               1-251, gnl|hg17|chr4 (68732891-68733141)
               

               
               1-251, gnl|loxAfr1|scaffold_209135 (929-676)
               

               
               1-251, gnl|mm7|chr9 (71520776-71520534)
               

               
               1-251, gnl|Mm7|chr9 (71520777-71520533)
               

               
               1-251, gnl|monDom2|scaffold_12 (35606649-35606878)
               

               
               1-251, gnl|oryCun1|scaffold_201726 (105637-105389)
               

               
               1-251, gnl|panTro1|chr3 (77768134-77767885)
               

               
               1-251, gnl|rheMac2|chr7 (36038307-36038545)
               

               
               1-251, gnl|rn3|chr8 (75973739-75973497)
               


               
               252-804, gnl|bosTau2|chr10 (34639021-34638466)
               

               
               252-804, gnl|Hg17|chr15 (55788204-55788756)
               

               
               252-804, gnl|Mm7|chr9 (71518654-71518108)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cag (0.151194)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.151194)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

	1-251, gnl\|bosTau2\|chr10 (34641047-34640797)
	1-251, gnl\|canFam2\|chr30 (25857556-25857804)
	1-251, gnl\|dasNov1\|scaffold_24829 (2415-2653)
	1-251, gnl\|echTel1\|scaffold_312756 (225532-225294)
	1-251, gnl\|Hg17\|chr15 (55786194-55786445)
	1-251, gnl\|hg17\|chr4 (68732891-68733141)
	1-251, gnl\|loxAfr1\|scaffold_209135 (929-676)
	1-251, gnl\|mm7\|chr9 (71520776-71520534)
	1-251, gnl\|Mm7\|chr9 (71520777-71520533)
	1-251, gnl\|monDom2\|scaffold_12 (35606649-35606878)
	1-251, gnl\|oryCun1\|scaffold_201726 (105637-105389)
	1-251, gnl\|panTro1\|chr3 (77768134-77767885)
	1-251, gnl\|rheMac2\|chr7 (36038307-36038545)
	1-251, gnl\|rn3\|chr8 (75973739-75973497)

	252-804, gnl\|bosTau2\|chr10 (34639021-34638466)
	252-804, gnl\|Hg17\|chr15 (55788204-55788756)
	252-804, gnl\|Mm7\|chr9 (71518654-71518108)