Ss1.1-Thy1-THY010027E01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCAGGCCGCCAGCACTATGGATCGAGCGCTCCGGCTCCTCGCGCGTTCTCGCTGCCTCTC GCGGGTTCCAGCCTCTGCTCCCGGCCCCGGCCCAGGCAGCAGCCCTAGCGGCGTGTCGCG CCTCCTGCTCCGGCCTCCGAACGCCGCTCGAATGGCCAGCCAGAATTCTTTCCGGATAGA GTATGATACCTTTGGTGAACTCAAGGTCCCAAATGATAAGTATTATGGTGCCCAGACTGT GAGATCTACGATGAACTTTAAAATCGGAGGCGTGACGGAACGCATGCCAATCCCAGTTAT TAAAGCTTTTGGGATCTTGAAGCGTGCAGCTGCTGAAGTAAATCAGGATTATGGTCTTGA TCCAAAGATTGCTAATGCAATAATGAAGGCAGCAGATGAGGTAGCTGAAGGTAAATTAAA TGATCATTTTCCTCTTGTGGTGTGGCAGACTGGGTCAGGAACCCAGACAAATATGAATGT AAATGAAGTCATTAGCAACAGGGCAATTGAAATGCTAGGAGGCGAGCTTGGCAGCAAGAA ACCCGTTCATCCCAACGATCATGTTAATAAAAGCCAGAGCTCAAATGATACGTTCCCCAC GGCCATGCACATTGCTGCAGCAGTGGAAGTTCACGAAGCACTGCTGCCAGGACTGCAGAA GCTACATGATGCTCTCGATGCAAAATCCAGGGAGTTTGCCCAGATCATCAAAATTGGGCG CACTCATACTCAGGACGCTGTCCCACTCACTCTCGGGCAGGAATTTAGTGGCTATGTTCA ACAAGTGAAATATGCAATAACAAGAATAAAAGCTGCCATGCCAAGAATCTACGAGCTTGC AGCTGGGGGCACTGCTGTTGGTACTGGTTTAAATACTAGGATTGGTTTTGCAGAAAAGGT CGCTGCCAAAGTAGCCGCACTCACAGGCTTGCCTTTTGTCACAGCTCCAAATAAATTTGA GGCTCTAGCTGCCCATGATGCTTTGGTTGAACTCAGTGGAGCCATGAACACGACTGCTTG CAGTCTGATGAAGATCGCAAATGACATTCGTTTTCTGGGGTCTGGTCCCCGCTCAGGTCT GGGAGAACTGATCTTGCCTGAAAATGAACCGGGAAGCAGTATCATGCCAGGCAAGGTGAA CCCCACCCAGTGTGAAGCGCTGACCATGGTCGCTGCCCAGGTCATGGGGAATCACGTCGC CGTCACCGTCGGGGGCAGCAATGGACATTTTGAGTTGAATGTGTTCAAACCAATGATGAT TAAAAATGTGTTGCACTCGGCCAGACTGCTGGGGGATGCGGCTGTTTCCTTCACAGAAAA CTGCGTGGTGGGAATCCAGGCCAACACCGAAAGGATCAACAAGCTGATGAATGAGTCTCT GATGTTGGTGACCGCTCTTAACCCTCACATAGGGTATGACAAAGCAGCCAAGATTGCTAA GACTGCACACAAAAATGGGTCAACCTTAAAGGCAACTGCTGTTGAACTTGGCTATCTCAC AGCAGAGCAGTTTGATGAGTGGGTAAAACCTAAGGACATGCTGGGTCCAAAGTGATTTAA TAAATTTGTAATAAAAATGGCCACATTGTCTAAGTGAAGTAAACTCCTTATAGTTCTTAA ACAAAAATGGATACATATGAAGGGAAACCAGTGTTTCCTTTATCTAGGAGATCAGTTTGG TTGGTGTATAAACCAACCCCAGGACATGCCACATCCCAAGTGAATTTCAAAGTGTAAAAT AAAATAGTGGAAGTGTACAAAATC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCAGGCCGCCAGCACTATGGATCGAGCGCTCCGGCTCCTCGCGCGTTCTCGCTGCCTCTC GCGGGTTCCAGCCTCTGCTCCCGGCCCCGGCCCAGGCAGCAGCCCTAGCGGCGTGTCGCG CCTCCTGCTCCGGCCTCCGAACGCCGCTCGAATGGCCAGCCAGAATTCTTTCCGGATAGA GTATGATACCTTTGGTGAACTCAAGGTCCCAAATGATAAGTATTATGGTGCCCAGACTGT GAGATCTACGATGAACTTTAAAATCGGAGGCGTGACGGAACGCATGCCAATCCCAGTTAT TAAAGCTTTTGGGATCTTGAAGCGTGCAGCTGCTGAAGTAAATCAGGATTATGGTCTTGA TCCAAAGATTGCTAATGCAATAATGAAGGCAGCAGATGAGGTAGCTGAAGGTAAATTAAA TGATCATTTTCCTCTTGTGGTGTGGCAGACTGGGTCAGGAACCCAGACAAATATGAATGT AAATGAAGTCATTAGCAACAGGGCAATTGAAATGCTAGGAGGCGAGCTTGGCAGCAAGAA ACCCGTTCATCCCAACGATCATGTTAATAAAAGCCAGAGCTCAAATGATACGTTCCCCAC GGCCATGCACATTGCTGCAGCAGTGGAAGTTCACGAAGCACTGCTGCCAGGACTGCAGAA GCTACATGATGCTCTCGATGCAAAATCCAGGGAGTTTGCCCAGATCATCAAAATTGGGCG CACTCATACTCAGGACGCTGTCCCACTCACTCTCGGGCAGGAATTTAGTGGCTATGTTCA ACAAGTGAAATATGCAATAACAAGAATAAAAGCTGCCATGCCAAGAATCTACGAGCTTGC AGCTGGGGGCACTGCTGTTGGTACTGGTTTAAATACTAGGATTGGTTTTGCAGAAAAGGT CGCTGCCAAAGTAGCCGCACTCACAGGCTTGCCTTTTGTCACAGCTCCAAATAAATTTGA GGCTCTAGCTGCCCATGATGCTTTGGTTGAACTCAGTGGAGCCATGAACACGACTGCTTG CAGTCTGATGAAGATCGCAAATGACATTCGTTTTCTGGGGTCTGGTCCCCGCTCAGGTCT GGGAGAACTGATCTTGCCTGAAAATGAACCGGGAAGCAGTATCATGCCAGGCAAGGTGAA CCCCACCCAGTGTGAAGCGCTGACCATGGTCGCTGCCCAGGTCATGGGGAATCACGTCGC CGTCACCGTCGGGGGCAGCAATGGACATTTTGAGTTGAATGTGTTCAAACCAATGATGAT TAAAAATGTGTTGCACTCGGCCAGACTGCTGGGGGATGCGGCTGTTTCCTTCACAGAAAA CTGCGTGGTGGGAATCCAGGCCAACACCGAAAGGATCAACAAGCTGATGAATGAGTCTCT GATGTTGGTGACCGCTCTTAACCCTCACATAGGGTATGACAAAGCAGCCAAGATTGCTAA GACTGCACACAAAAATGGGTCAACCTTAAAGGCAACTGCTGTTGAACTTGGCTATCTCAC AGCAGAGCAGTTTGATGAGTGGGTAAAACCTAAGGACATGCTGGGTCCAAAGTGATTTAA TAAATTTGTAATAAAAATGGCCACATTGTCTAAGTGAAGTAAACTCCTTATAGTTCTTAA ACAAAAATGGATACATATGAAGGGAAACCAGTGTTTCCTTTATCTAGGAGATCAGTTTGG TTGGTGTATAAACCAACCCCAGGACATGCCACATCCCAAGTGAATTTCAAAGTGTAAAAT AAAATAGTGGAAGTGTACAAAATC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1003-1134, + strand, RNAz p=0.736473 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1003-1134, + strand, RNAz p=0.736473 |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 154-289, gnl|bosTau2|chr16 (24059563-24059698) | |
| 154-289, gnl|canFam2|chr7 (35889565-35889700) | |
| 154-289, gnl|danRer3|chrNA (54736886-54736751) | |
| 154-289, gnl|echTel1|scaffold_282333 (18741-18606) | |
| 154-289, gnl|fr1|chrUn (161786062-161785946) | |
| 154-289, gnl|galGal2|chr2 (85578578-85578713) | |
| 154-289, gnl|hg17|chr1 (238006522-238006657) | |
| 154-289, gnl|Hg17|chr1 (238006658-238006523) | |
| 154-289, gnl|loxAfr1|scaffold_29069 (15931-15794) | |
| 154-289, gnl|mm7|chr1 (175585333-175585468) | |
| 154-289, gnl|Mm7|chr1 (175585469-175585334) | |
| 154-289, gnl|monDom2|scaffold_13 (42526482-42526347) | |
| 154-289, gnl|oryCun1|scaffold_169547 (1086-951) | |
| 154-289, gnl|panTro1|chr1 (222015245-222015380) | |
| 154-289, gnl|rheMac2|chr1 (215531867-215531732) | |
| 154-289, gnl|rn3|chr13 (91537015-91537150) | |
| 154-289, gnl|tetNig1|chr1 (10567675-10567557) | |
| 154-289, gnl|xenTro1|scaffold_556 (620622-620751) | |
| 399-577, gnl|bosTau2|chr16 (24086695-24086873) | |
| 399-577, gnl|canFam2|chr7 (35884095-35884267) | |
| 399-577, gnl|danRer3|chrNA (54739049-54738880) | |
| 399-577, gnl|dasNov1|scaffold_73843 (4526-4354) | |
| 399-577, gnl|echTel1|scaffold_269519 (7718-7546) | |
| 399-577, gnl|fr1|chrUn (161786351-161786182) | |
| 399-577, gnl|galGal2|chr2 (85576775-85576947) | |
| 399-577, gnl|hg17|chr1 (238001309-238001481) | |
| 399-577, gnl|Hg17|chr1 (238001486-238001308) | |
| 399-577, gnl|loxAfr1|scaffold_29069 (23357-23185) | |
| 399-577, gnl|mm7|chr1 (175581021-175581193) | |
| 399-577, gnl|Mm7|chr1 (175581198-175581020) | |
| 399-577, gnl|monDom2|scaffold_13 (42537704-42537532) | |
| 399-577, gnl|oryCun1|scaffold_169547 (1373-1201) | |
| 399-577, gnl|panTro1|chr1 (222010034-222010206) | |
| 399-577, gnl|rheMac2|chr1 (215537251-215537079) | |
| 399-577, gnl|rn3|chr13 (91532095-91532267) | |
| 399-577, gnl|tetNig1|chr1 (10567964-10567797) | |
| 399-577, gnl|xenTro1|scaffold_556 (609631-609803) | |
| 924-1134, gnl|bosTau2|chr16 (24094106-24094316) | |
| 924-1134, gnl|Hg17|chr1 (237993589-237993379) | |
| 924-1134, gnl|Mm7|chr1 (175574306-175574096) | |
| 1411-1764, gnl|bosTau2|chr16 (24099589-24099955) | |
| 1411-1764, gnl|Hg17|chr1 (237987313-237986964) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 154-289, gnl|bosTau2|chr16 (24059563-24059698) | |
| 154-289, gnl|canFam2|chr7 (35889565-35889700) | |
| 154-289, gnl|danRer3|chrNA (54736886-54736751) | |
| 154-289, gnl|echTel1|scaffold_282333 (18741-18606) | |
| 154-289, gnl|fr1|chrUn (161786062-161785946) | |
| 154-289, gnl|galGal2|chr2 (85578578-85578713) | |
| 154-289, gnl|hg17|chr1 (238006522-238006657) | |
| 154-289, gnl|Hg17|chr1 (238006658-238006523) | |
| 154-289, gnl|loxAfr1|scaffold_29069 (15931-15794) | |
| 154-289, gnl|mm7|chr1 (175585333-175585468) | |
| 154-289, gnl|Mm7|chr1 (175585469-175585334) | |
| 154-289, gnl|monDom2|scaffold_13 (42526482-42526347) | |
| 154-289, gnl|oryCun1|scaffold_169547 (1086-951) | |
| 154-289, gnl|panTro1|chr1 (222015245-222015380) | |
| 154-289, gnl|rheMac2|chr1 (215531867-215531732) | |
| 154-289, gnl|rn3|chr13 (91537015-91537150) | |
| 154-289, gnl|tetNig1|chr1 (10567675-10567557) | |
| 154-289, gnl|xenTro1|scaffold_556 (620622-620751) | |
| 399-577, gnl|bosTau2|chr16 (24086695-24086873) | |
| 399-577, gnl|canFam2|chr7 (35884095-35884267) | |
| 399-577, gnl|danRer3|chrNA (54739049-54738880) | |
| 399-577, gnl|dasNov1|scaffold_73843 (4526-4354) | |
| 399-577, gnl|echTel1|scaffold_269519 (7718-7546) | |
| 399-577, gnl|fr1|chrUn (161786351-161786182) | |
| 399-577, gnl|galGal2|chr2 (85576775-85576947) | |
| 399-577, gnl|hg17|chr1 (238001309-238001481) | |
| 399-577, gnl|Hg17|chr1 (238001486-238001308) | |
| 399-577, gnl|loxAfr1|scaffold_29069 (23357-23185) | |
| 399-577, gnl|mm7|chr1 (175581021-175581193) | |
| 399-577, gnl|Mm7|chr1 (175581198-175581020) | |
| 399-577, gnl|monDom2|scaffold_13 (42537704-42537532) | |
| 399-577, gnl|oryCun1|scaffold_169547 (1373-1201) | |
| 399-577, gnl|panTro1|chr1 (222010034-222010206) | |
| 399-577, gnl|rheMac2|chr1 (215537251-215537079) | |
| 399-577, gnl|rn3|chr13 (91532095-91532267) | |
| 399-577, gnl|tetNig1|chr1 (10567964-10567797) | |
| 399-577, gnl|xenTro1|scaffold_556 (609631-609803) | |
| 924-1134, gnl|bosTau2|chr16 (24094106-24094316) | |
| 924-1134, gnl|Hg17|chr1 (237993589-237993379) | |
| 924-1134, gnl|Mm7|chr1 (175574306-175574096) | |
| 1411-1764, gnl|bosTau2|chr16 (24099589-24099955) | |
| 1411-1764, gnl|Hg17|chr1 (237987313-237986964) |
| Expressed library(ies): 39 entry(ies) | More info |
| Expressed library(ies): 39 entry(ies) | Help | Less info |
| ssp (1.3552) | |
| mas (0.630915) | |
| cki (0.495704) | |
| tbr (0.462535) | |
| isp (0.451128) | |
| hea (0.408998) | |
| ill (0.351185) | |
| ecc (0.345105) | |
| sme (0.305437) | |
| csk (0.281492) | |
| fce (0.271592) | |
| ste (0.270416) | |
| pla (0.267344) | |
| kid (0.259471) | |
| cbe (0.239234) | |
| ece (0.229305) | |
| tes (0.207814) | |
| fli (0.202881) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| eje (0.197668) | |
| col (0.195008) | |
| ton (0.1755) | |
| eye (0.170503) | |
| nje (0.16592) | |
| cje (0.165235) | |
| eli (0.151814) | |
| cag (0.151194) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| che (0.136314) | |
| ret (0.128733) | |
| bla (0.124347) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ldo (0.0970026) |
| Expressed library(ies): 39 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ssp (1.3552) | |
| mas (0.630915) | |
| cki (0.495704) | |
| tbr (0.462535) | |
| isp (0.451128) | |
| hea (0.408998) | |
| ill (0.351185) | |
| ecc (0.345105) | |
| sme (0.305437) | |
| csk (0.281492) | |
| fce (0.271592) | |
| ste (0.270416) | |
| pla (0.267344) | |
| kid (0.259471) | |
| cbe (0.239234) | |
| ece (0.229305) | |
| tes (0.207814) | |
| fli (0.202881) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| eje (0.197668) | |
| col (0.195008) | |
| ton (0.1755) | |
| eye (0.170503) | |
| nje (0.16592) | |
| cje (0.165235) | |
| eli (0.151814) | |
| cag (0.151194) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| che (0.136314) | |
| ret (0.128733) | |
| bla (0.124347) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ldo (0.0970026) |