Non-Coding RNA Search

Ss1.1-Thy1-THY010027F09.5

Sequence:


               
               CCAAACAGAAAGCCAACCAGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGC
AGCAGCAGCAGCAGCAGGACTCTGTGTGGGGAATGAACCACAGTGCACTCCATTCAGTAT
TTCAGACCAATCAAAGCAACAACCAACAATCCAATTTTGAAGCTGTACAAAGTGGCAAGA
AAAAGAAAAAGCAGAAGATGGTCCGAGCAGATCCTAGTTTATTAGGTTTTTCAGTTAATG
CTTCATCAGAGCGACTCAATATGTGCGAAATCGAGACGTTGGATGACTACTGAGCACCTG
CCAGCAGACTGGCCTTCCCTCTCCTCTCTGCCGACCATGGATTCTCCACTTTTGGACACA
ACGCTTACTCACCATATACTCTTTATCACTGCAACAAATCACAGAGCCCGTCATCTCAGG
CTTTTTCTTCTAGCCCTTTGTGTCCAAGATTCTTAAACCATTTTTGTTGGTGAGCATCTC
AGACTGTAGATGAGTGGACCGGACCCTGTGTCTCGGGGTGGCAGTTGGGATTACTCCCCA
ACAAGGCTGATTTTGGGCAGCACCTGTTAACTGTGCCGCGACTCCCCCTGCTGTCTCCCA
CAAAGTGTGTTGGGATCTGCCAATAGCAATTTACTTTCTCTTGTCACTTTTTTCCTTCTA
TTTTGTTTTTTCTTCCTTCCCTGCCCCCCCTCCCCCAAATAAAAGGGCCAGGGGTCTAAC
TGGTGCAATCATGAAGAGAGTTAATGGTAACAGACATTGGCCAGCAACAAAACGCCCACG
GACTGTGACTTGAGCGTCCGACAGAGACAGTCAGAGCTCTCCCAGTCTGAAGGTTGCATT
GCCACGGCCAACTTTGGGATGGCGTCAAAGAGGCCCTGAATGGGGTGGAGTTTAGATTGG
ATTGGCTCGATGTTGTATACCCCTCGCCTTTTCTTCCTGAGCATCCTTGCAGAGAAAGGA
TTCTTGGTTTTTCCTCATTAGCTAGTGACTTCCAAGCAAGCTGACTTCTCCCCTGGCTTA
CTCCACCCCAATTGGACAAAGGAAGCCCTGTGGCCTGGGAGAGGGACTTATTTTTAATTT
TTCTTTCTTACAAAAACGGATTTTTTCCCATAAATATTTTTACTTCAGAGGACTAGGACC
AGTTTGTTTTGGGCCTTTCTGCTGAAAATTTGTCTCGTTTAAGAGGCAGTTAGGATCTCT
ACCATATGTATGAATTTGTATAATTTCATTTTGGCTAGGGATAAACTTTTGCTTCTGATA
AAAGCCCGGAATTTCATCTGGTTCCTCAGAGCATTGCGTGTGTGTCTTGCTGTGGCCCCG
AAAGGTTTGGTTTAAAGATTCTGGAACAGCAGGTTGCTTGCCTTTTCTGAAAAGAGAACG
TGTAGAACCTGACCACCTGTAAGACCTTCATCCATGGAAACCACTATTCAGGAGATGGCA
GTGGGATGGAGGGACGGGAGAGACAGGAGGGAGAAGCCTGCTCCTGGCTTCTGCGGGCGT
CTGGTCGTGGCCTCCTAGTACCCCTTCTCTTCAGATAGAAACGTGTTCAAGCCCTATTTA
TAAACAGTGCCCTTCCTGCCTCCGCCAACACCCCACAGAACATCACCTGGAGTTGCCAAT
CACACCTTGGTCTGGAGCCATGGACCGTCCGTCCCTGTGCAAGAAGCGCTGTGGTTCGGG
TGGCCCCGGGCGGAGCACCCTCCCGTGCTGTCATTGTTGCCCGAAGAAGGCTGGCGTTGC
TCTGAGAGCAGTTTGGTTGGGGATGATGATGTTTGGTTTCCGTGTTTATTCTCTTGGTTC
ACCATTCTCCCTGTCCCTTCCGCCTCCCTCCCTCCCTCCTAAACATGTACAATAACTATA
CAGAGACTGCTACAAACTTGTATATAGTTTTTGGATCAAATAGCATGAGGAGACGGGGAA
CCATTACAAATTGGGGCTCCTGCTCTCCTTTGCTTTGTAAATTCAAAAGTTGGGGGGGTG
GGAAGAGGGATAGTTAAATGTTTACAAAACTTTAAACTCCCTCGGAACTTTTGCCAGTGT
GGAGGAAAATAAAAAAGAACTTAATTAATAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAAACAGAAAGCCAACCAGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGC
AGCAGCAGCAGCAGCAGGACTCTGTGTGGGGAATGAACCACAGTGCACTCCATTCAGTAT
TTCAGACCAATCAAAGCAACAACCAACAATCCAATTTTGAAGCTGTACAAAGTGGCAAGA
AAAAGAAAAAGCAGAAGATGGTCCGAGCAGATCCTAGTTTATTAGGTTTTTCAGTTAATG
CTTCATCAGAGCGACTCAATATGTGCGAAATCGAGACGTTGGATGACTACTGAGCACCTG
CCAGCAGACTGGCCTTCCCTCTCCTCTCTGCCGACCATGGATTCTCCACTTTTGGACACA
ACGCTTACTCACCATATACTCTTTATCACTGCAACAAATCACAGAGCCCGTCATCTCAGG
CTTTTTCTTCTAGCCCTTTGTGTCCAAGATTCTTAAACCATTTTTGTTGGTGAGCATCTC
AGACTGTAGATGAGTGGACCGGACCCTGTGTCTCGGGGTGGCAGTTGGGATTACTCCCCA
ACAAGGCTGATTTTGGGCAGCACCTGTTAACTGTGCCGCGACTCCCCCTGCTGTCTCCCA
CAAAGTGTGTTGGGATCTGCCAATAGCAATTTACTTTCTCTTGTCACTTTTTTCCTTCTA
TTTTGTTTTTTCTTCCTTCCCTGCCCCCCCTCCCCCAAATAAAAGGGCCAGGGGTCTAAC
TGGTGCAATCATGAAGAGAGTTAATGGTAACAGACATTGGCCAGCAACAAAACGCCCACG
GACTGTGACTTGAGCGTCCGACAGAGACAGTCAGAGCTCTCCCAGTCTGAAGGTTGCATT
GCCACGGCCAACTTTGGGATGGCGTCAAAGAGGCCCTGAATGGGGTGGAGTTTAGATTGG
ATTGGCTCGATGTTGTATACCCCTCGCCTTTTCTTCCTGAGCATCCTTGCAGAGAAAGGA
TTCTTGGTTTTTCCTCATTAGCTAGTGACTTCCAAGCAAGCTGACTTCTCCCCTGGCTTA
CTCCACCCCAATTGGACAAAGGAAGCCCTGTGGCCTGGGAGAGGGACTTATTTTTAATTT
TTCTTTCTTACAAAAACGGATTTTTTCCCATAAATATTTTTACTTCAGAGGACTAGGACC
AGTTTGTTTTGGGCCTTTCTGCTGAAAATTTGTCTCGTTTAAGAGGCAGTTAGGATCTCT
ACCATATGTATGAATTTGTATAATTTCATTTTGGCTAGGGATAAACTTTTGCTTCTGATA
AAAGCCCGGAATTTCATCTGGTTCCTCAGAGCATTGCGTGTGTGTCTTGCTGTGGCCCCG
AAAGGTTTGGTTTAAAGATTCTGGAACAGCAGGTTGCTTGCCTTTTCTGAAAAGAGAACG
TGTAGAACCTGACCACCTGTAAGACCTTCATCCATGGAAACCACTATTCAGGAGATGGCA
GTGGGATGGAGGGACGGGAGAGACAGGAGGGAGAAGCCTGCTCCTGGCTTCTGCGGGCGT
CTGGTCGTGGCCTCCTAGTACCCCTTCTCTTCAGATAGAAACGTGTTCAAGCCCTATTTA
TAAACAGTGCCCTTCCTGCCTCCGCCAACACCCCACAGAACATCACCTGGAGTTGCCAAT
CACACCTTGGTCTGGAGCCATGGACCGTCCGTCCCTGTGCAAGAAGCGCTGTGGTTCGGG
TGGCCCCGGGCGGAGCACCCTCCCGTGCTGTCATTGTTGCCCGAAGAAGGCTGGCGTTGC
TCTGAGAGCAGTTTGGTTGGGGATGATGATGTTTGGTTTCCGTGTTTATTCTCTTGGTTC
ACCATTCTCCCTGTCCCTTCCGCCTCCCTCCCTCCCTCCTAAACATGTACAATAACTATA
CAGAGACTGCTACAAACTTGTATATAGTTTTTGGATCAAATAGCATGAGGAGACGGGGAA
CCATTACAAATTGGGGCTCCTGCTCTCCTTTGCTTTGTAAATTCAAAAGTTGGGGGGGTG
GGAAGAGGGATAGTTAAATGTTTACAAAACTTTAAACTCCCTCGGAACTTTTGCCAGTGT
GGAGGAAAATAAAAAAGAACTTAATTAATAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8K0R0_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8K0R0_MOUSE

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               75-227, gnl|bosTau2|chr3 (78612721-78612569)
               

               
               75-227, gnl|Hg17|chr2 (233540474-233540626)
               

               
               75-227, gnl|Mm7|chr1 (87347214-87347366)
               


               
               950-1290, gnl|bosTau2|chr23 (41481907-41482253)
               

               
               950-1290, gnl|Hg17|chr2 (233547733-233548060)
               

               
               950-1290, gnl|Mm7|chr1 (87350673-87351003)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               75-227, gnl|bosTau2|chr3 (78612721-78612569)
               

               
               75-227, gnl|Hg17|chr2 (233540474-233540626)
               

               
               75-227, gnl|Mm7|chr1 (87347214-87347366)
               


               
               950-1290, gnl|bosTau2|chr23 (41481907-41482253)
               

               
               950-1290, gnl|Hg17|chr2 (233547733-233548060)
               

               
               950-1290, gnl|Mm7|chr1 (87350673-87351003)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               sin (0.174948)
               

               
               spl (0.143184)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               sin (0.174948)
               

               
               spl (0.143184)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	75-227, gnl\|bosTau2\|chr3 (78612721-78612569)
	75-227, gnl\|Hg17\|chr2 (233540474-233540626)
	75-227, gnl\|Mm7\|chr1 (87347214-87347366)

	950-1290, gnl\|bosTau2\|chr23 (41481907-41482253)
	950-1290, gnl\|Hg17\|chr2 (233547733-233548060)
	950-1290, gnl\|Mm7\|chr1 (87350673-87351003)

	mas (0.210305)
	fcc (0.197785)
	sin (0.174948)
	spl (0.143184)
	pla (0.133672)
	ute (0.132784)
	bla (0.124347)
	pgl (0.118483)
	cty (0.10408)
	eje (0.0988338)