Non-Coding RNA Search

Ss1.1-Thy1-THY010029F05.5

Sequence:


               
               GAGCCAAACCCCACAGGAATGCAGCCCGGTCACATGCGCTGCGGCGGCGGTGGACGTGCC
TCTCCCCCCGCGCCCCAAGGAGACCCAGCGCCATCTTGCCCTGACGCAGTTACAAAAGTC
ATGGGAGAATTTGTGTCTCCTCGTCCGCGCCAGCGCCCCAAAGATCCGCAGAGGCCGAGC
CGGGGCCCTCACCTCGCGCAAGGACAGGAGAAAACAGGGAAGAGCCTTGAGATTCCCCTC
GCCACTGCTTGTGCTCCATACCGGCCGCGGCGACAACGACCACCATCGTCACCTCTCCCT
CTGCCTGTGCAACAGCCTCCCCCGAAGGCTCTGGCCCCACCCGCTGCTGCAGCATGAGGT
CATCGCGAACCAATCACTAGGCGCACGACAGAGCACATCAGGCACTGATTGGCTGCGTGG
ACCGCCTCTGCCTCTCCCCACTCCGCTTACTAGGCGCTCAGGGTCGCTGGGTAGCGAGAA
GACAGAAAGCGCCATTTCGGGGAGAGACCCCTGAAAACAAGAACCGGAATCACCGTGTCA
TTTTAGTTTGGGGAAACCATTTATTCTTTGGCCTCCCCTTTTTCTTCGAGATAACCGTCT
CTCTGTCCCTCCCTTATTTAATCACCGCCACATAAAGGAATTCCCGCTCCCCTCCCCGCA
CACAGTCCCGCCGGCGGGGAAATCCTTCCCCGGGGCCAAAGAAGTAGGAGGCAGCAACGG
CAACTGCACCGACGGCAATGGCAGCTTTTTACCCCGATACACCGTGGCAGGGAGGCGGCG
CTGACGGTGGCTGTATTTTTCCTGCTGCTTCTCCCCCCGACCTCTTCCGTTTCTTGCTCC
TCCATCGAGACGGCGCTGGACTCGCCAGCTCCGCTTTTATCCGGTGCTCGGAGCCTGCGC
ACTGGAGCTTCCTCAGCCCCTAGTGGGCGTCGAGTGACACCCCAACTGAGTTCATCCAGC
GCTGGAGGCTAGACTTGGGAGGGGGAGGGGAAGGCTGGGACAGAGGTGGTTTGGGGAGTG
GGAGAGAGCGCATCCTTTTGGGAGGACGAAGGGAGAGGGAAGGGTCTTTCCCAAGGCCTA
GGATCAGTATCCTTCCACCCAGTAGTGGCGCGCGCGCGAGCTCACCGATATCCAGACTTG
AGGGCTACTCAGGGAAAAGGGATAAAGAACCAATCCCACCAAATTCCGAAACTTCCCCAA
ACCTTCAGTGAATTGTTGAATGCATCTGTTGTGAAACAGACGGAGACTCTGTCCACCTCT
CTGCCTCCAGTTGGCCGTCTTCGAGCCTCCCTGGAGAGGCAACGGCGGGCAGCAGCCCAC
AAGCAAAATGGCGGCAGGCAGCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCCAAACCCCACAGGAATGCAGCCCGGTCACATGCGCTGCGGCGGCGGTGGACGTGCC
TCTCCCCCCGCGCCCCAAGGAGACCCAGCGCCATCTTGCCCTGACGCAGTTACAAAAGTC
ATGGGAGAATTTGTGTCTCCTCGTCCGCGCCAGCGCCCCAAAGATCCGCAGAGGCCGAGC
CGGGGCCCTCACCTCGCGCAAGGACAGGAGAAAACAGGGAAGAGCCTTGAGATTCCCCTC
GCCACTGCTTGTGCTCCATACCGGCCGCGGCGACAACGACCACCATCGTCACCTCTCCCT
CTGCCTGTGCAACAGCCTCCCCCGAAGGCTCTGGCCCCACCCGCTGCTGCAGCATGAGGT
CATCGCGAACCAATCACTAGGCGCACGACAGAGCACATCAGGCACTGATTGGCTGCGTGG
ACCGCCTCTGCCTCTCCCCACTCCGCTTACTAGGCGCTCAGGGTCGCTGGGTAGCGAGAA
GACAGAAAGCGCCATTTCGGGGAGAGACCCCTGAAAACAAGAACCGGAATCACCGTGTCA
TTTTAGTTTGGGGAAACCATTTATTCTTTGGCCTCCCCTTTTTCTTCGAGATAACCGTCT
CTCTGTCCCTCCCTTATTTAATCACCGCCACATAAAGGAATTCCCGCTCCCCTCCCCGCA
CACAGTCCCGCCGGCGGGGAAATCCTTCCCCGGGGCCAAAGAAGTAGGAGGCAGCAACGG
CAACTGCACCGACGGCAATGGCAGCTTTTTACCCCGATACACCGTGGCAGGGAGGCGGCG
CTGACGGTGGCTGTATTTTTCCTGCTGCTTCTCCCCCCGACCTCTTCCGTTTCTTGCTCC
TCCATCGAGACGGCGCTGGACTCGCCAGCTCCGCTTTTATCCGGTGCTCGGAGCCTGCGC
ACTGGAGCTTCCTCAGCCCCTAGTGGGCGTCGAGTGACACCCCAACTGAGTTCATCCAGC
GCTGGAGGCTAGACTTGGGAGGGGGAGGGGAAGGCTGGGACAGAGGTGGTTTGGGGAGTG
GGAGAGAGCGCATCCTTTTGGGAGGACGAAGGGAGAGGGAAGGGTCTTTCCCAAGGCCTA
GGATCAGTATCCTTCCACCCAGTAGTGGCGCGCGCGCGAGCTCACCGATATCCAGACTTG
AGGGCTACTCAGGGAAAAGGGATAAAGAACCAATCCCACCAAATTCCGAAACTTCCCCAA
ACCTTCAGTGAATTGTTGAATGCATCTGTTGTGAAACAGACGGAGACTCTGTCCACCTCT
CTGCCTCCAGTTGGCCGTCTTCGAGCCTCCCTGGAGAGGCAACGGCGGGCAGCAGCCCAC
AAGCAAAATGGCGGCAGGCAGCTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-1079, gnl|bosTau2|chr4 (22178276-22179354)
               

               
               1-1079, gnl|Hg17|chr7 (104247141-104248291)
               

               
               1-1079, gnl|Mm7|chr5 (22473512-22474640)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1079, gnl|bosTau2|chr4 (22178276-22179354)
               

               
               1-1079, gnl|Hg17|chr7 (104247141-104248291)
               

               
               1-1079, gnl|Mm7|chr5 (22473512-22474640)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fty (0.17584)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)

	1-1079, gnl\|bosTau2\|chr4 (22178276-22179354)
	1-1079, gnl\|Hg17\|chr7 (104247141-104248291)
	1-1079, gnl\|Mm7\|chr5 (22473512-22474640)