Ss1.1-Thy1-THY010029G03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACGGTTTCCGGGCTCTCGGTCCCCGCGCGCGTTCGGGCTATCCCGCCGCCGTGGCCATGT TCGTGTCCGATTTCCGCAAGGAATTCTACGAGGTGGTCCAGAGTCAGAGGGTCCTTCTCT TCGTGGCCTCGGACGTGGACGCTCTGTGCGCTTGCAAGATCCTTCAGGCCCTGTTCCAGT GTGACCACGTGCCATATACGCTGGTTCCAGTTTCTGGGTGGCAAGAACTTGAAACTGCAT TTCTTGAGCATAAAGAGCAGTTCCATTACTTCATCCTCATAAACTGTGGCGCTAACGTGG ACCTATTGGATATACTTCAACCCGATGAAGATACCGTATTTTTCGTGTGTGACACTCACA GGCCAGTCAATGTTGTGAACGTGTACAATGATACCCAGATCAAACTGCTTATTAAACAAG ATGACGACCTGGAAGTTCCTGCCTATGACGACCTCTTTAGGGATGAAGAGGAAGATGAAG AACATTCAGGAAACGAAAGCGATGAGGGGTCAGAGCCTTCTGAGAAGCGCACACGGTTAG AGGAGGAAATCGTGGAGCGAACCATGAAGAGGAGGCAACGAAGAGAGTGGGAGGCCCGCA GAAGAGACATCCTTTTTGACTACGAACAGTACGAATACCACGGGACGTCATCGGCCATGT TGATGTTCGACCTGGCGTGGATGATGTCTAAGGACCTGAGCGACATGCTGTGGTGGGCCA TCGTTGGACTAACGGACCAGTGGGTGCAAGACAAAATCACCCAGATGAAGTACGTGACTG ACGTGGGCGTCCTGCAGAGGCATGTGTCCCGGCACAGCCATCGGCACCAGGATGAGGAGC ATGCGCTCTCCGTTGACTGCATGCGGATCTCTTTCGAGTATGACCTCCGCCTGGCACTCT ACCAGCACTGGTCCCTGCATGACAGCCTGTGTAACACGTGCTACACCGCAGCCAGGTTCA AGCTCTGGTCCCTGCACGGGCAGAAGCGGCTCCAGGAGTTCCTTGCAGACGTGGGCCTCC CCCTGAAACAGGTGAAACAGAAGTTTCAGTCCATGGACATCTCCTTGAAGGAGAATTTGC GGGAGATGATTGAAGAGTCTGCGAATAAGTTTGGCATGAAGGACATGCGCATCCAGACTT TCAGCATCCATTTTGGCTTCAAGCATAAGTTCCTGGCCAGTGATGTGGTCTTTGCCACCA TGGCGCTGATGGAGAGCCCCGAGAAGGACGGCTCCGGGACGGATAATTTCATCCAGGCTC TGGACAGTCTCTCCAGGAGCAACCTGGACAAACTGTATCATGGCCTGGAGCTTGCCAAGC AGCAGCTGCGAGCCACCCAGCAGACCATCGCCAGCTGCCTCTGCACCAACCTCATCATTT CCCAAGGGCCTTTCCTCTACTGCTCCCTCATGGAGGGCACTCCCGATGTCATGCTCTTCT CCAAGCCAGCGTCCCTGAGCCTGCTGACCATCTGCCTGCTCAAGTCCTGGCACTCCCGAT CAAAGAACCGGCGCTGCAAGCTACTGCCCTTGGTGATGGCCGCACCGCTGAGTGTGGAGC AGGGCACCGTGACCATGGTGGGCATCCCGCCGGAGACTGACAGCTCGGACAAAAAGAACT TTTTTGGCCGGGCGTTTGAGAAGGCGGCAGAGAGCACCAACTCCCGGACGATGCACAACC ATTTCGATCTGTCAGTGATTGAGCTGAAAGCCGAGGACCGCAGCAAGTTCCTGGATGCAC TCGTTTCCCTCCTGTCCTAGGAGTTTGATTTCTTCAGAAGTGACCTCCTATTTATGTTGG TTCCTGGATGCACTCGTTTCCCTCCTGTCCTAGGAGTTTGATTTCTTCAGAAGTGACCTC CTATTTATGTTGGCTGGCTTTTATTTAGATTCTAAGTTATAGGCGTAGTTCTAGATGTAG GAACAGTGGTTTTTAATGGAATAAAATGCTGATTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACGGTTTCCGGGCTCTCGGTCCCCGCGCGCGTTCGGGCTATCCCGCCGCCGTGGCCATGT TCGTGTCCGATTTCCGCAAGGAATTCTACGAGGTGGTCCAGAGTCAGAGGGTCCTTCTCT TCGTGGCCTCGGACGTGGACGCTCTGTGCGCTTGCAAGATCCTTCAGGCCCTGTTCCAGT GTGACCACGTGCCATATACGCTGGTTCCAGTTTCTGGGTGGCAAGAACTTGAAACTGCAT TTCTTGAGCATAAAGAGCAGTTCCATTACTTCATCCTCATAAACTGTGGCGCTAACGTGG ACCTATTGGATATACTTCAACCCGATGAAGATACCGTATTTTTCGTGTGTGACACTCACA GGCCAGTCAATGTTGTGAACGTGTACAATGATACCCAGATCAAACTGCTTATTAAACAAG ATGACGACCTGGAAGTTCCTGCCTATGACGACCTCTTTAGGGATGAAGAGGAAGATGAAG AACATTCAGGAAACGAAAGCGATGAGGGGTCAGAGCCTTCTGAGAAGCGCACACGGTTAG AGGAGGAAATCGTGGAGCGAACCATGAAGAGGAGGCAACGAAGAGAGTGGGAGGCCCGCA GAAGAGACATCCTTTTTGACTACGAACAGTACGAATACCACGGGACGTCATCGGCCATGT TGATGTTCGACCTGGCGTGGATGATGTCTAAGGACCTGAGCGACATGCTGTGGTGGGCCA TCGTTGGACTAACGGACCAGTGGGTGCAAGACAAAATCACCCAGATGAAGTACGTGACTG ACGTGGGCGTCCTGCAGAGGCATGTGTCCCGGCACAGCCATCGGCACCAGGATGAGGAGC ATGCGCTCTCCGTTGACTGCATGCGGATCTCTTTCGAGTATGACCTCCGCCTGGCACTCT ACCAGCACTGGTCCCTGCATGACAGCCTGTGTAACACGTGCTACACCGCAGCCAGGTTCA AGCTCTGGTCCCTGCACGGGCAGAAGCGGCTCCAGGAGTTCCTTGCAGACGTGGGCCTCC CCCTGAAACAGGTGAAACAGAAGTTTCAGTCCATGGACATCTCCTTGAAGGAGAATTTGC GGGAGATGATTGAAGAGTCTGCGAATAAGTTTGGCATGAAGGACATGCGCATCCAGACTT TCAGCATCCATTTTGGCTTCAAGCATAAGTTCCTGGCCAGTGATGTGGTCTTTGCCACCA TGGCGCTGATGGAGAGCCCCGAGAAGGACGGCTCCGGGACGGATAATTTCATCCAGGCTC TGGACAGTCTCTCCAGGAGCAACCTGGACAAACTGTATCATGGCCTGGAGCTTGCCAAGC AGCAGCTGCGAGCCACCCAGCAGACCATCGCCAGCTGCCTCTGCACCAACCTCATCATTT CCCAAGGGCCTTTCCTCTACTGCTCCCTCATGGAGGGCACTCCCGATGTCATGCTCTTCT CCAAGCCAGCGTCCCTGAGCCTGCTGACCATCTGCCTGCTCAAGTCCTGGCACTCCCGAT CAAAGAACCGGCGCTGCAAGCTACTGCCCTTGGTGATGGCCGCACCGCTGAGTGTGGAGC AGGGCACCGTGACCATGGTGGGCATCCCGCCGGAGACTGACAGCTCGGACAAAAAGAACT TTTTTGGCCGGGCGTTTGAGAAGGCGGCAGAGAGCACCAACTCCCGGACGATGCACAACC ATTTCGATCTGTCAGTGATTGAGCTGAAAGCCGAGGACCGCAGCAAGTTCCTGGATGCAC TCGTTTCCCTCCTGTCCTAGGAGTTTGATTTCTTCAGAAGTGACCTCCTATTTATGTTGG TTCCTGGATGCACTCGTTTCCCTCCTGTCCTAGGAGTTTGATTTCTTCAGAAGTGACCTC CTATTTATGTTGGCTGGCTTTTATTTAGATTCTAAGTTATAGGCGTAGTTCTAGATGTAG GAACAGTGGTTTTTAATGGAATAAAATGCTGATTTT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 48 entry(ies) | More info |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
| 397-546, gnl|bosTau2|chr17 (43886434-43886583) | |
| 397-546, gnl|canFam2|chr26 (32802092-32801959) | |
| 397-546, gnl|danRer3|chr8 (112615-112759) | |
| 397-546, gnl|dasNov1|scaffold_4450 (140617-140738) | |
| 397-546, gnl|echTel1|scaffold_313852 (48834-48949) | |
| 397-546, gnl|fr1|chrUn (1361810-1361931) | |
| 397-546, gnl|galGal2|chr15 (656485-656642) | |
| 397-546, gnl|hg17|chr22 (17845926-17846050) | |
| 397-546, gnl|Hg17|chr22 (17845937-17846083) | |
| 397-546, gnl|loxAfr1|scaffold_6154 (21506-21382) | |
| 397-546, gnl|mm7|chr16 (18357169-18357047) | |
| 397-546, gnl|Mm7|chr16_random (3232805-3232951) | |
| 397-546, gnl|panTro1|chr23 (17820829-17820953) | |
| 397-546, gnl|rheMac2|chr10 (63529763-63529887) | |
| 397-546, gnl|rn3|chr11_random (1201101-1201227) | |
| 397-546, gnl|tetNig1|chr12 (5931891-5932024) | |
| 397-546, gnl|xenTro1|scaffold_118 (406182-406314) | |
| 766-883, gnl|bosTau2|chr17 (43889321-43889438) | |
| 766-883, gnl|Hg17|chr22 (17867441-17867558) | |
| 766-883, gnl|Mm7|chr16_random (3244288-3244405) | |
| 884-1015, gnl|bosTau2|chr17 (43889683-43889814) | |
| 884-1015, gnl|Hg17|chr22 (17869463-17869594) | |
| 884-1015, gnl|Mm7|chr16_random (3245004-3245135) | |
| 1114-1277, gnl|bosTau2|chr17 (43890620-43890780) | |
| 1114-1277, gnl|canFam2|chr26 (32786161-32785990) | |
| 1114-1277, gnl|danRer3|chr8 (125018-125189) | |
| 1114-1277, gnl|dasNov1|scaffold_24638 (2698-2869) | |
| 1114-1277, gnl|echTel1|scaffold_313852 (49551-49710) | |
| 1114-1277, gnl|fr1|chrUn (1363272-1363429) | |
| 1114-1277, gnl|galGal2|chr15 (661518-661683) | |
| 1114-1277, gnl|hg17|chr22 (17870607-17870778) | |
| 1114-1277, gnl|Hg17|chr22 (17870606-17870769) | |
| 1114-1277, gnl|loxAfr1|scaffold_6154 (8704-8533) | |
| 1114-1277, gnl|mm7|chr16 (18343074-18342903) | |
| 1114-1277, gnl|Mm7|chr16_random (3246890-3247053) | |
| 1114-1277, gnl|monDom2|scaffold_141 (2122064-2122235) | |
| 1114-1277, gnl|oryCun1|scaffold_117269 (634-463) | |
| 1114-1277, gnl|panTro1|chr23 (17845565-17845736) | |
| 1114-1277, gnl|rheMac2|chr10 (63556855-63557023) | |
| 1114-1277, gnl|rn3|chr11_random (1213391-1213562) | |
| 1114-1277, gnl|tetNig1|chr12 (5933332-5933490) | |
| 1114-1277, gnl|xenTro1|scaffold_118 (411929-412093) | |
| 1484-1618, gnl|bosTau2|chr17 (43894352-43894485) | |
| 1484-1618, gnl|Hg17|chr22 (17878587-17878722) | |
| 1484-1618, gnl|Mm7|chr16_random (3255025-3255157) | |
| 1814-1948, gnl|bosTau2|chr17 (43897268-43897407) | |
| 1814-1948, gnl|Hg17|chr22 (17882540-17882667) | |
| 1814-1948, gnl|Mm7|chr16_random (3259638-3259770) |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 397-546, gnl|bosTau2|chr17 (43886434-43886583) | |
| 397-546, gnl|canFam2|chr26 (32802092-32801959) | |
| 397-546, gnl|danRer3|chr8 (112615-112759) | |
| 397-546, gnl|dasNov1|scaffold_4450 (140617-140738) | |
| 397-546, gnl|echTel1|scaffold_313852 (48834-48949) | |
| 397-546, gnl|fr1|chrUn (1361810-1361931) | |
| 397-546, gnl|galGal2|chr15 (656485-656642) | |
| 397-546, gnl|hg17|chr22 (17845926-17846050) | |
| 397-546, gnl|Hg17|chr22 (17845937-17846083) | |
| 397-546, gnl|loxAfr1|scaffold_6154 (21506-21382) | |
| 397-546, gnl|mm7|chr16 (18357169-18357047) | |
| 397-546, gnl|Mm7|chr16_random (3232805-3232951) | |
| 397-546, gnl|panTro1|chr23 (17820829-17820953) | |
| 397-546, gnl|rheMac2|chr10 (63529763-63529887) | |
| 397-546, gnl|rn3|chr11_random (1201101-1201227) | |
| 397-546, gnl|tetNig1|chr12 (5931891-5932024) | |
| 397-546, gnl|xenTro1|scaffold_118 (406182-406314) | |
| 766-883, gnl|bosTau2|chr17 (43889321-43889438) | |
| 766-883, gnl|Hg17|chr22 (17867441-17867558) | |
| 766-883, gnl|Mm7|chr16_random (3244288-3244405) | |
| 884-1015, gnl|bosTau2|chr17 (43889683-43889814) | |
| 884-1015, gnl|Hg17|chr22 (17869463-17869594) | |
| 884-1015, gnl|Mm7|chr16_random (3245004-3245135) | |
| 1114-1277, gnl|bosTau2|chr17 (43890620-43890780) | |
| 1114-1277, gnl|canFam2|chr26 (32786161-32785990) | |
| 1114-1277, gnl|danRer3|chr8 (125018-125189) | |
| 1114-1277, gnl|dasNov1|scaffold_24638 (2698-2869) | |
| 1114-1277, gnl|echTel1|scaffold_313852 (49551-49710) | |
| 1114-1277, gnl|fr1|chrUn (1363272-1363429) | |
| 1114-1277, gnl|galGal2|chr15 (661518-661683) | |
| 1114-1277, gnl|hg17|chr22 (17870607-17870778) | |
| 1114-1277, gnl|Hg17|chr22 (17870606-17870769) | |
| 1114-1277, gnl|loxAfr1|scaffold_6154 (8704-8533) | |
| 1114-1277, gnl|mm7|chr16 (18343074-18342903) | |
| 1114-1277, gnl|Mm7|chr16_random (3246890-3247053) | |
| 1114-1277, gnl|monDom2|scaffold_141 (2122064-2122235) | |
| 1114-1277, gnl|oryCun1|scaffold_117269 (634-463) | |
| 1114-1277, gnl|panTro1|chr23 (17845565-17845736) | |
| 1114-1277, gnl|rheMac2|chr10 (63556855-63557023) | |
| 1114-1277, gnl|rn3|chr11_random (1213391-1213562) | |
| 1114-1277, gnl|tetNig1|chr12 (5933332-5933490) | |
| 1114-1277, gnl|xenTro1|scaffold_118 (411929-412093) | |
| 1484-1618, gnl|bosTau2|chr17 (43894352-43894485) | |
| 1484-1618, gnl|Hg17|chr22 (17878587-17878722) | |
| 1484-1618, gnl|Mm7|chr16_random (3255025-3255157) | |
| 1814-1948, gnl|bosTau2|chr17 (43897268-43897407) | |
| 1814-1948, gnl|Hg17|chr22 (17882540-17882667) | |
| 1814-1948, gnl|Mm7|chr16_random (3259638-3259770) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| ill (0.351185) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| ese (0.126502) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| nbm (0.0993246) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ill (0.351185) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| ese (0.126502) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| nbm (0.0993246) |