Ss1.1-Thy1-THY010029H09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACGTGCGCTTACCGGAAGGACCGAGCCTGGCTGTGTCTGGCTGTGTTTATCTCGTTGGAG ACCCAGTCGGCAGTTGGCGGGCAACGGGTTCAAAGCTGCAGGCAGCGCGAGGACCCGCGG CCCCGCCCCGGCCCGGCCTGGCAGGTAGCAGAGGCAGCAGGCCGTGCCGGGGGGGCATGT GGCTGTAACCAGTGGCCCAGGGGATGTTACGCTGGACGGTGCACCTGGAGGGCGGGCCCC GCAGGGTGAACCATGCTGCAGTGGCCGTCGGGCACAGGGTGTACTCCTTCGGGGGTTACT GCTCCGGCGAGGACTACGAGACGCTGCGTCAGATTGATGTACACATTTTCAATGCAGTGT CCTTGCGTTGGACAAAGCTGCCCCCGGTGAGGCCCGCCACCCGCGGGCAGGCTCCTGTGG TACCCTACATGCGGTACGGACACTCCACCGTCCTCATCGACGACACAGTCTTCCTTTGGG GTGGGCGGAATGACACCGAAGGGGCCTGCAATGTGCTTTATGCTTTTGATGTCAATACTC ACAAATGGTCCACACCCCGAGTAGCAGGAACAGTTCCTGGGGCCCGGGACGGACATTCGG CTTGTGTCCTGGGCAAGACCATGTATATTTTCGGGGGCTACGAGCAGCTGGCGGACTGCT TTTCCAATGACATTCACAAGCTGGATACCAGCACCATGACATGGACCCTGATCTGTACAA AGGGCAACCCCGCACGCTGGAGGGACTTCCACTCGGCCACCATGCTGGGCAATCACATGT ATGTCTTTGGGGGCCGTGCCGACCGTTTCGGGCCATTCCACTCCAACAATGAGATTTACT GCAACCGCATCCGCGTCTTTGACACGAGGACCGAGGCCTGGCTGGACTGTCCACCCACCC CGGTGCTGCCTGAGGGGCGCCGGAGCCACTCAGCCTTTGGCTACAATGGGGAGCTGTACA TTTTTGGTGGCTATAATGCAAGGCTGAATCGGCACTTCCATGATCTCTGGAAGTTTAACC CTGTGTCGTTTACCTGGAAGAAGATTGAACCGAAGGGGAAGGGGCCGTGTCCCCGCCGGC GCCAGTGCTGCTGTATTGTTGGTGACAAGATTGTTCTCTTTGGGGGTACCAGTCCGTCTC CTGAGGAAGGCCTGGGAGATGAATTTGACCTTATAGATCATTCTGACTTACACATTTTGG ACTTTAGCCCTAGTCTGAAGACTCTGTGCAAACTGGCTGTGATTCAGTATAACCTGGACC AGTCCTGTTTGCCCCATGACATCAGGTGGGAGCTGAATGCCATGACCACCAACAGCAATA TCAGTCGCCCCATCGTCTCCTCCCATGGGTAGAGGAAGTTTCTGCTGCCTCCTTTCCTGA GCCTGCGTTGTCTTCACTGCCCCTGCCCATCTCTCACCCGCCTGCCCCCTTTGGACCCTG GACTCGTATACCTCCACATGGAGTTGGACTAGAGGTGTTTTCTGTGCTGTGAACTCAGTG GGGAGCTGTAGGGAGGAGGGCTAGGTCCCCTCCTCCTTGGGCCGAGGGCCCCTTCCCCTT GGTGCTCTTTCCCATCCACCTCCCTCCAACTGCTCCTGGGCCTCTGCTCTGCCCTGGCCA GCCATGCTCTGCTGGGAAGTGAAGGGAATGGGGAGAAGGGAGAAGCAAGCAGGGTCTGAG CCTCAGGAGCTTCCCCCCCAACACACATCCCTATTACCACCCCTTCCCCCTGCTTGAGCC ATGAGCATGGATTGGGAGCTGAGAGGAGTTGCAGCTGTTGGCATGAAGCCTCCTTCTCCC TGACTTGGGGAGGCAAGGACCAGCAGGTAATCTCACCCTTACTTGAGCTGTTGCTGCACC CTGACGCTCTCAGCCGGCTCGGATTTTATAAAAATGAATTAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACGTGCGCTTACCGGAAGGACCGAGCCTGGCTGTGTCTGGCTGTGTTTATCTCGTTGGAG ACCCAGTCGGCAGTTGGCGGGCAACGGGTTCAAAGCTGCAGGCAGCGCGAGGACCCGCGG CCCCGCCCCGGCCCGGCCTGGCAGGTAGCAGAGGCAGCAGGCCGTGCCGGGGGGGCATGT GGCTGTAACCAGTGGCCCAGGGGATGTTACGCTGGACGGTGCACCTGGAGGGCGGGCCCC GCAGGGTGAACCATGCTGCAGTGGCCGTCGGGCACAGGGTGTACTCCTTCGGGGGTTACT GCTCCGGCGAGGACTACGAGACGCTGCGTCAGATTGATGTACACATTTTCAATGCAGTGT CCTTGCGTTGGACAAAGCTGCCCCCGGTGAGGCCCGCCACCCGCGGGCAGGCTCCTGTGG TACCCTACATGCGGTACGGACACTCCACCGTCCTCATCGACGACACAGTCTTCCTTTGGG GTGGGCGGAATGACACCGAAGGGGCCTGCAATGTGCTTTATGCTTTTGATGTCAATACTC ACAAATGGTCCACACCCCGAGTAGCAGGAACAGTTCCTGGGGCCCGGGACGGACATTCGG CTTGTGTCCTGGGCAAGACCATGTATATTTTCGGGGGCTACGAGCAGCTGGCGGACTGCT TTTCCAATGACATTCACAAGCTGGATACCAGCACCATGACATGGACCCTGATCTGTACAA AGGGCAACCCCGCACGCTGGAGGGACTTCCACTCGGCCACCATGCTGGGCAATCACATGT ATGTCTTTGGGGGCCGTGCCGACCGTTTCGGGCCATTCCACTCCAACAATGAGATTTACT GCAACCGCATCCGCGTCTTTGACACGAGGACCGAGGCCTGGCTGGACTGTCCACCCACCC CGGTGCTGCCTGAGGGGCGCCGGAGCCACTCAGCCTTTGGCTACAATGGGGAGCTGTACA TTTTTGGTGGCTATAATGCAAGGCTGAATCGGCACTTCCATGATCTCTGGAAGTTTAACC CTGTGTCGTTTACCTGGAAGAAGATTGAACCGAAGGGGAAGGGGCCGTGTCCCCGCCGGC GCCAGTGCTGCTGTATTGTTGGTGACAAGATTGTTCTCTTTGGGGGTACCAGTCCGTCTC CTGAGGAAGGCCTGGGAGATGAATTTGACCTTATAGATCATTCTGACTTACACATTTTGG ACTTTAGCCCTAGTCTGAAGACTCTGTGCAAACTGGCTGTGATTCAGTATAACCTGGACC AGTCCTGTTTGCCCCATGACATCAGGTGGGAGCTGAATGCCATGACCACCAACAGCAATA TCAGTCGCCCCATCGTCTCCTCCCATGGGTAGAGGAAGTTTCTGCTGCCTCCTTTCCTGA GCCTGCGTTGTCTTCACTGCCCCTGCCCATCTCTCACCCGCCTGCCCCCTTTGGACCCTG GACTCGTATACCTCCACATGGAGTTGGACTAGAGGTGTTTTCTGTGCTGTGAACTCAGTG GGGAGCTGTAGGGAGGAGGGCTAGGTCCCCTCCTCCTTGGGCCGAGGGCCCCTTCCCCTT GGTGCTCTTTCCCATCCACCTCCCTCCAACTGCTCCTGGGCCTCTGCTCTGCCCTGGCCA GCCATGCTCTGCTGGGAAGTGAAGGGAATGGGGAGAAGGGAGAAGCAAGCAGGGTCTGAG CCTCAGGAGCTTCCCCCCCAACACACATCCCTATTACCACCCCTTCCCCCTGCTTGAGCC ATGAGCATGGATTGGGAGCTGAGAGGAGTTGCAGCTGTTGGCATGAAGCCTCCTTCTCCC TGACTTGGGGAGGCAAGGACCAGCAGGTAATCTCACCCTTACTTGAGCTGTTGCTGCACC CTGACGCTCTCAGCCGGCTCGGATTTTATAAAAATGAATTAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 535-1904, - strand, RNAz p=0.649792 | |
| 1513-1745, - strand, RNAz p=0.990774 | |
| 1786-1920, + strand, RNAz p=0.945069 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 535-1904, - strand, RNAz p=0.649792 | |
| 1513-1745, - strand, RNAz p=0.990774 | |
| 1786-1920, + strand, RNAz p=0.945069 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of AK097719, + |
| Aligned organism(s): 54 entry(ies) | More info |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
| 141-357, gnl|bosTau2|chr23 (13067798-13068014) | |
| 141-357, gnl|Hg17|chr6 (43092846-43093062) | |
| 141-357, gnl|Mm7|chr17 (44807345-44807129) | |
| 535-651, gnl|bosTau2|chr23 (13068550-13068666) | |
| 535-651, gnl|canFam2|chr12 (14549386-14549515) | |
| 535-651, gnl|danRer3|chr23 (830506-830639) | |
| 535-651, gnl|dasNov1|scaffold_6917 (18947-19065) | |
| 535-651, gnl|fr1|chrUn (308678950-308678815) | |
| 535-651, gnl|galGal2|chr3 (4129563-4129694) | |
| 535-651, gnl|hg17|chr6 (43093560-43093695) | |
| 535-651, gnl|Hg17|chr6 (43093569-43093685) | |
| 535-651, gnl|mm7|chr17 (44806663-44806525) | |
| 535-651, gnl|Mm7|chr17 (44806649-44806533) | |
| 535-651, gnl|oryCun1|scaffold_173098 (12209-12344) | |
| 535-651, gnl|panTro1|chr5 (43691014-43691149) | |
| 535-651, gnl|rheMac2|chr4 (42907133-42907268) | |
| 535-651, gnl|rn3|chr9 (10046578-10046440) | |
| 535-651, gnl|tetNig1|chr17 (1736174-1736039) | |
| 535-651, gnl|xenTro1|scaffold_1883 (4215-4359) | |
| 721-939, gnl|bosTau2|chr23 (13069027-13069245) | |
| 721-939, gnl|canFam2|chr12 (14549885-14550112) | |
| 721-939, gnl|danRer3|chr23 (833979-834199) | |
| 721-939, gnl|dasNov1|scaffold_6917 (19133-19336) | |
| 721-939, gnl|echTel1|scaffold_323377 (162376-162603) | |
| 721-939, gnl|fr1|chrUn (308677842-308677622) | |
| 721-939, gnl|galGal2|chr3 (4131228-4131455) | |
| 721-939, gnl|hg17|chr6 (43094058-43094285) | |
| 721-939, gnl|Hg17|chr6 (43094057-43094275) | |
| 721-939, gnl|loxAfr1|scaffold_15673 (37515-37742) | |
| 721-939, gnl|mm7|chr17 (44806170-44805943) | |
| 721-939, gnl|Mm7|chr17 (44806169-44805951) | |
| 721-939, gnl|oryCun1|scaffold_173098 (12690-12917) | |
| 721-939, gnl|panTro1|chr5 (43691512-43691739) | |
| 721-939, gnl|rheMac2|chr4 (42907631-42907858) | |
| 721-939, gnl|rn3|chr9 (10045976-10045749) | |
| 721-939, gnl|tetNig1|chr17 (1734689-1734424) | |
| 721-939, gnl|xenTro1|scaffold_1883 (5578-5804) | |
| 1283-1405, gnl|bosTau2|chr23 (13071407-13071531) | |
| 1283-1405, gnl|Hg17|chr6 (43096380-43096504) | |
| 1513-1920, gnl|bosTau2|chr8 (46736954-46737333) | |
| 1513-1920, gnl|Hg17|chr6 (43096620-43097002) | |
| 1513-1920, gnl|Mm7|chr17 (44803739-44803378) | |
| 1730-1904, gnl|bosTau2|chr23 (13072038-13072213) | |
| 1730-1904, gnl|canFam2|chr12 (14552482-14552666) | |
| 1730-1904, gnl|dasNov1|scaffold_6917 (20064-20222) | |
| 1730-1904, gnl|echTel1|scaffold_323377 (165099-165283) | |
| 1730-1904, gnl|hg17|chr6 (43096829-43097011) | |
| 1730-1904, gnl|Hg17|chr6 (43096829-43097002) | |
| 1730-1904, gnl|mm7|chr17 (44803531-44803364) | |
| 1730-1904, gnl|Mm7|chr17 (44803525-44803372) | |
| 1730-1904, gnl|oryCun1|scaffold_173098 (15149-15311) | |
| 1730-1904, gnl|panTro1|chr5 (43694281-43694463) | |
| 1730-1904, gnl|rheMac2|chr4 (42910423-42910603) | |
| 1730-1904, gnl|rn3|chr9 (10043347-10043180) |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 141-357, gnl|bosTau2|chr23 (13067798-13068014) | |
| 141-357, gnl|Hg17|chr6 (43092846-43093062) | |
| 141-357, gnl|Mm7|chr17 (44807345-44807129) | |
| 535-651, gnl|bosTau2|chr23 (13068550-13068666) | |
| 535-651, gnl|canFam2|chr12 (14549386-14549515) | |
| 535-651, gnl|danRer3|chr23 (830506-830639) | |
| 535-651, gnl|dasNov1|scaffold_6917 (18947-19065) | |
| 535-651, gnl|fr1|chrUn (308678950-308678815) | |
| 535-651, gnl|galGal2|chr3 (4129563-4129694) | |
| 535-651, gnl|hg17|chr6 (43093560-43093695) | |
| 535-651, gnl|Hg17|chr6 (43093569-43093685) | |
| 535-651, gnl|mm7|chr17 (44806663-44806525) | |
| 535-651, gnl|Mm7|chr17 (44806649-44806533) | |
| 535-651, gnl|oryCun1|scaffold_173098 (12209-12344) | |
| 535-651, gnl|panTro1|chr5 (43691014-43691149) | |
| 535-651, gnl|rheMac2|chr4 (42907133-42907268) | |
| 535-651, gnl|rn3|chr9 (10046578-10046440) | |
| 535-651, gnl|tetNig1|chr17 (1736174-1736039) | |
| 535-651, gnl|xenTro1|scaffold_1883 (4215-4359) | |
| 721-939, gnl|bosTau2|chr23 (13069027-13069245) | |
| 721-939, gnl|canFam2|chr12 (14549885-14550112) | |
| 721-939, gnl|danRer3|chr23 (833979-834199) | |
| 721-939, gnl|dasNov1|scaffold_6917 (19133-19336) | |
| 721-939, gnl|echTel1|scaffold_323377 (162376-162603) | |
| 721-939, gnl|fr1|chrUn (308677842-308677622) | |
| 721-939, gnl|galGal2|chr3 (4131228-4131455) | |
| 721-939, gnl|hg17|chr6 (43094058-43094285) | |
| 721-939, gnl|Hg17|chr6 (43094057-43094275) | |
| 721-939, gnl|loxAfr1|scaffold_15673 (37515-37742) | |
| 721-939, gnl|mm7|chr17 (44806170-44805943) | |
| 721-939, gnl|Mm7|chr17 (44806169-44805951) | |
| 721-939, gnl|oryCun1|scaffold_173098 (12690-12917) | |
| 721-939, gnl|panTro1|chr5 (43691512-43691739) | |
| 721-939, gnl|rheMac2|chr4 (42907631-42907858) | |
| 721-939, gnl|rn3|chr9 (10045976-10045749) | |
| 721-939, gnl|tetNig1|chr17 (1734689-1734424) | |
| 721-939, gnl|xenTro1|scaffold_1883 (5578-5804) | |
| 1283-1405, gnl|bosTau2|chr23 (13071407-13071531) | |
| 1283-1405, gnl|Hg17|chr6 (43096380-43096504) | |
| 1513-1920, gnl|bosTau2|chr8 (46736954-46737333) | |
| 1513-1920, gnl|Hg17|chr6 (43096620-43097002) | |
| 1513-1920, gnl|Mm7|chr17 (44803739-44803378) | |
| 1730-1904, gnl|bosTau2|chr23 (13072038-13072213) | |
| 1730-1904, gnl|canFam2|chr12 (14552482-14552666) | |
| 1730-1904, gnl|dasNov1|scaffold_6917 (20064-20222) | |
| 1730-1904, gnl|echTel1|scaffold_323377 (165099-165283) | |
| 1730-1904, gnl|hg17|chr6 (43096829-43097011) | |
| 1730-1904, gnl|Hg17|chr6 (43096829-43097002) | |
| 1730-1904, gnl|mm7|chr17 (44803531-44803364) | |
| 1730-1904, gnl|Mm7|chr17 (44803525-44803372) | |
| 1730-1904, gnl|oryCun1|scaffold_173098 (15149-15311) | |
| 1730-1904, gnl|panTro1|chr5 (43694281-43694463) | |
| 1730-1904, gnl|rheMac2|chr4 (42910423-42910603) | |
| 1730-1904, gnl|rn3|chr9 (10043347-10043180) |
| Expressed library(ies): 20 entry(ies) | More info |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
| mas (1.05152) | |
| nep (0.551775) | |
| fhi (0.508733) | |
| hyp (0.42851) | |
| nms (0.427716) | |
| hlv (0.417769) | |
| pla (0.267344) | |
| jej (0.197844) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| nco (0.161734) | |
| cli (0.152812) | |
| ute (0.132784) | |
| ese (0.126502) | |
| eep (0.122564) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) | |
| cty (0.10408) |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (1.05152) | |
| nep (0.551775) | |
| fhi (0.508733) | |
| hyp (0.42851) | |
| nms (0.427716) | |
| hlv (0.417769) | |
| pla (0.267344) | |
| jej (0.197844) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| nco (0.161734) | |
| cli (0.152812) | |
| ute (0.132784) | |
| ese (0.126502) | |
| eep (0.122564) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) | |
| cty (0.10408) |