Ss1.1-Thy1-THY010030A11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTGACAAATGGGCCCCCTCCGTGGTGAAGGTGTCATACAAGGGCTCTCCAGCAGCCAGAC GAGCTTTTGTTCCTCAGCTCCGGAGCGGCAAGTTCAACGTTTTGCTGACCACATACGAGT ATATCATTAAAGACAAGCACATCCTTGCAAAGATCCGCTGGAAGTACATGATCGTGGACG AAGGCCACCGCATGAAGAACCACCACTGCAAGCTGACGCAGGTCCTCAACACGCACTACG TGGCCCCCCGCCGCCTGCTGCTGACGGGCACACCGCTGCAGAACAAGCTGCCTGAGCTCT GGGCACTGCTCAACTTCCTGCTGCCCACCATCTTCAAGAGCTGCAGCACCTTTGAACAGT GGTTCAATGCACCCTTTGCCATGACTGGGGAAAAGGTGGACCTGAACGAGGAGGAAACCA TTCTCATCATCCGTCGTCTCCACAAAGTGCTACGGCCCTTCCTGCTCCGGCGGCTCAAGA AGGAAGTCGAGGCTCAGTTGCCTGAAAAGGTGGAATACGTCATCAAGTGCGACATGTCCG CCCTGCAGCGCGTGCTCTACCGGCACATGCAGGCCAAGGGGGTGCTGCTGACCGATGGCT CTGAGAAGGACAAGAAGGGCAAAGGTGGCACCAAGACACTGATGAACACCATCATGCAGC TGAGGAAGATCTGCAACCACCCGTACATGTTCCAGCACATCGAGGAGTCCTTTTCTGAGC ACTGGGGCTTTACTGGCGGCATCGTTCAAGGGCTGGACCTGTACCGAGCCTCGGGGAAGT TTGAGCTGCTCGACAGAATTCTTCCCAAACTCCGTGCCACCAACCATAAAGTGCTGCTGT TCTGTCAGATGACCTCCCTCATGACGATCATGGAAGACTATTTGGCGTATCGCGGTTTTA AATACCTCAGGCTCGATGGAACCACGAAAGCGGAGGACCGGGGCATGCTGCTGAAAACCT TCAACGAGCCCGGCTCCGAGTACTTCATCTTCCTGCTCAGCACCCGGGCTGGGGGGCTCG GTCTGAACCTCCAATCGGCTGACACTGTGATCATATTCGACAGTGACTGGAACCCCCACC AGGACCTGCAAGCGCAGGACCGTGCCCACCGCATTGGGCAGCAGAATGAGGTGCGCGTTC TCCGCCTTTGCACGGTCAACAGCGTGGAGGAGAAGATTCTGGCTGCAGCCAAGTACAAGC TCAACGTCGACCAGAAGGTGATCCAGGCCGGCATGTTCGACCAGAAGTCCTCCAGCCACG AGAGGCGTGCCTTCCTGCAGGCCATCCTCGAGCATGAGGAGCAGGATGAGGAAGAAGACG AAGTGCCTGACGATGAGACGGTGAACCAGATGATTGCCCGGCATGAGGAGGAGTTCGACC TGTTCATGCGCATGGACCCGGACCGCAGGCGTGAGGAGGCTCGCAACCCCAAGCGGAAGC CGCGCCTGATGGAGGAGGATGAGCTCCCCTCGTGGATCATCAAGGACGACGCCGAGGTGG AGCGGCTGACCTGTGAGGAGGAGGAGGAGAAGATGTTCGGCCGCGGCTCCCGTCACCGCA AGGAGGTGGACTACAGCGACTCTCTGACTGAGAAGCAGTGGCTCAAGGCCATCGAGGAGG GCACGCTGGAGGAGATAGAAGAGGAGGTCCGGCAGAAGAAATCATCACGGAAGCGCAAGC GAGACAGTGATGCCGGCCCCTCCACCCCGACCACCAGCACGCGCAGCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTGACAAATGGGCCCCCTCCGTGGTGAAGGTGTCATACAAGGGCTCTCCAGCAGCCAGAC GAGCTTTTGTTCCTCAGCTCCGGAGCGGCAAGTTCAACGTTTTGCTGACCACATACGAGT ATATCATTAAAGACAAGCACATCCTTGCAAAGATCCGCTGGAAGTACATGATCGTGGACG AAGGCCACCGCATGAAGAACCACCACTGCAAGCTGACGCAGGTCCTCAACACGCACTACG TGGCCCCCCGCCGCCTGCTGCTGACGGGCACACCGCTGCAGAACAAGCTGCCTGAGCTCT GGGCACTGCTCAACTTCCTGCTGCCCACCATCTTCAAGAGCTGCAGCACCTTTGAACAGT GGTTCAATGCACCCTTTGCCATGACTGGGGAAAAGGTGGACCTGAACGAGGAGGAAACCA TTCTCATCATCCGTCGTCTCCACAAAGTGCTACGGCCCTTCCTGCTCCGGCGGCTCAAGA AGGAAGTCGAGGCTCAGTTGCCTGAAAAGGTGGAATACGTCATCAAGTGCGACATGTCCG CCCTGCAGCGCGTGCTCTACCGGCACATGCAGGCCAAGGGGGTGCTGCTGACCGATGGCT CTGAGAAGGACAAGAAGGGCAAAGGTGGCACCAAGACACTGATGAACACCATCATGCAGC TGAGGAAGATCTGCAACCACCCGTACATGTTCCAGCACATCGAGGAGTCCTTTTCTGAGC ACTGGGGCTTTACTGGCGGCATCGTTCAAGGGCTGGACCTGTACCGAGCCTCGGGGAAGT TTGAGCTGCTCGACAGAATTCTTCCCAAACTCCGTGCCACCAACCATAAAGTGCTGCTGT TCTGTCAGATGACCTCCCTCATGACGATCATGGAAGACTATTTGGCGTATCGCGGTTTTA AATACCTCAGGCTCGATGGAACCACGAAAGCGGAGGACCGGGGCATGCTGCTGAAAACCT TCAACGAGCCCGGCTCCGAGTACTTCATCTTCCTGCTCAGCACCCGGGCTGGGGGGCTCG GTCTGAACCTCCAATCGGCTGACACTGTGATCATATTCGACAGTGACTGGAACCCCCACC AGGACCTGCAAGCGCAGGACCGTGCCCACCGCATTGGGCAGCAGAATGAGGTGCGCGTTC TCCGCCTTTGCACGGTCAACAGCGTGGAGGAGAAGATTCTGGCTGCAGCCAAGTACAAGC TCAACGTCGACCAGAAGGTGATCCAGGCCGGCATGTTCGACCAGAAGTCCTCCAGCCACG AGAGGCGTGCCTTCCTGCAGGCCATCCTCGAGCATGAGGAGCAGGATGAGGAAGAAGACG AAGTGCCTGACGATGAGACGGTGAACCAGATGATTGCCCGGCATGAGGAGGAGTTCGACC TGTTCATGCGCATGGACCCGGACCGCAGGCGTGAGGAGGCTCGCAACCCCAAGCGGAAGC CGCGCCTGATGGAGGAGGATGAGCTCCCCTCGTGGATCATCAAGGACGACGCCGAGGTGG AGCGGCTGACCTGTGAGGAGGAGGAGGAGAAGATGTTCGGCCGCGGCTCCCGTCACCGCA AGGAGGTGGACTACAGCGACTCTCTGACTGAGAAGCAGTGGCTCAAGGCCATCGAGGAGG GCACGCTGGAGGAGATAGAAGAGGAGGTCCGGCAGAAGAAATCATCACGGAAGCGCAAGC GAGACAGTGATGCCGGCCCCTCCACCCCGACCACCAGCACGCGCAGCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 230-349, + strand, RNAz p=0.544544 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 230-349, + strand, RNAz p=0.544544 |
| Aligned organism(s): 78 entry(ies) | More info |
| Aligned organism(s): 78 entry(ies) | Help | Less info |
| 151-399, gnl|bosTau2|chr7 (10137737-10137985) | |
| 151-399, gnl|canFam2|chr20 (53216137-53215890) | |
| 151-399, gnl|danRer3|chr3 (9924640-9924378) | |
| 151-399, gnl|dasNov1|scaffold_25676 (69648-69402) | |
| 151-399, gnl|echTel1|scaffold_287419 (27713-27459) | |
| 151-399, gnl|fr1|chrUn (91992366-91992613) | |
| 151-399, gnl|galGal2|chrZ_random (665275-665522) | |
| 151-399, gnl|hg17|chr19 (10993399-10993657) | |
| 151-399, gnl|Hg17|chr19 (10993399-10993647) | |
| 151-399, gnl|loxAfr1|scaffold_25347 (20113-20367) | |
| 151-399, gnl|mm7|chr9 (21546363-21546617) | |
| 151-399, gnl|Mm7|chr9 (21546363-21546611) | |
| 151-399, gnl|monDom2|scaffold_106 (2994089-2994347) | |
| 151-399, gnl|oryCun1|scaffold_189208 (409-659) | |
| 151-399, gnl|panTro1|chr20 (11393338-11393596) | |
| 151-399, gnl|rheMac2|chr19 (10838514-10838772) | |
| 151-399, gnl|rn3|chr8 (20776737-20776991) | |
| 151-399, gnl|tetNig1|chr18 (3660768-3661015) | |
| 151-399, gnl|xenTro1|scaffold_1142 (96530-96274) | |
| 508-618, gnl|bosTau2|chr7 (10140018-10140128) | |
| 508-618, gnl|Hg17|chr19 (10996005-10996115) | |
| 508-618, gnl|Mm7|chr9 (21548746-21548856) | |
| 751-919, gnl|bosTau2|chr7 (10144100-10144268) | |
| 751-919, gnl|canFam2|chr20 (53209764-53209574) | |
| 751-919, gnl|danRer3|chr3 (9921482-9921305) | |
| 751-919, gnl|dasNov1|scaffold_294922 (578-388) | |
| 751-919, gnl|echTel1|scaffold_287419 (21796-21610) | |
| 751-919, gnl|fr1|chrUn (91993615-91993789) | |
| 751-919, gnl|galGal2|chrZ_random (673833-674010) | |
| 751-919, gnl|hg17|chr19 (10999454-10999644) | |
| 751-919, gnl|Hg17|chr19 (10999459-10999627) | |
| 751-919, gnl|loxAfr1|scaffold_11798 (25878-25699) | |
| 751-919, gnl|mm7|chr9 (21552363-21552552) | |
| 751-919, gnl|Mm7|chr9 (21552368-21552536) | |
| 751-919, gnl|monDom2|scaffold_106 (3002153-3002336) | |
| 751-919, gnl|oryCun1|scaffold_189208 (6080-6254) | |
| 751-919, gnl|panTro1|chr20 (11399395-11399585) | |
| 751-919, gnl|rheMac2|chr19 (10845825-10846019) | |
| 751-919, gnl|rn3|chr8 (20783058-20783248) | |
| 751-919, gnl|tetNig1|chr18 (3661987-3662163) | |
| 751-919, gnl|xenTro1|scaffold_1142 (92552-92372) | |
| 979-1132, gnl|bosTau2|chr21 (8087406-8087559) | |
| 979-1132, gnl|canFam2|chr3 (50008414-50008250) | |
| 979-1132, gnl|danRer3|chrUn (64942218-64942378) | |
| 979-1132, gnl|dasNov1|scaffold_159655 (1339-1176) | |
| 979-1132, gnl|echTel1|scaffold_240663 (945-1109) | |
| 979-1132, gnl|fr1|chrUn (63949555-63949398) | |
| 979-1132, gnl|galGal2|chr10 (15225874-15226036) | |
| 979-1132, gnl|hg17|chr15 (91322466-91322630) | |
| 979-1132, gnl|Hg17|chr15 (91322466-91322619) | |
| 979-1132, gnl|loxAfr1|scaffold_109651 (443-607) | |
| 979-1132, gnl|mm7|chr7 (69328252-69328088) | |
| 979-1132, gnl|Mm7|chr7 (69328250-69328097) | |
| 979-1132, gnl|monDom2|scaffold_12 (69270778-69270614) | |
| 979-1132, gnl|oryCun1|scaffold_129276 (16953-16781) | |
| 979-1132, gnl|panTro1|chr16 (92295028-92295192) | |
| 979-1132, gnl|rheMac2|chr7 (72835230-72835394) | |
| 979-1132, gnl|rn3|chr1 (128734361-128734197) | |
| 979-1132, gnl|tetNig1|chrUn_random (135304644-135304491) | |
| 979-1132, gnl|xenTro1|scaffold_71 (2011907-2012071) | |
| 1388-1608, gnl|bosTau2|chr7 (10150744-10150964) | |
| 1388-1608, gnl|canFam2|chr20 (53202823-53202638) | |
| 1388-1608, gnl|danRer3|chr3 (9915450-9915258) | |
| 1388-1608, gnl|dasNov1|scaffold_50647 (8-195) | |
| 1388-1608, gnl|echTel1|scaffold_287419 (14889-14704) | |
| 1388-1608, gnl|fr1|chrUn (91994761-91994946) | |
| 1388-1608, gnl|galGal2|chrZ_random (685344-685529) | |
| 1388-1608, gnl|hg17|chr19 (11006587-11006772) | |
| 1388-1608, gnl|Hg17|chr19 (11006589-11006809) | |
| 1388-1608, gnl|mm7|chr9 (21558125-21558310) | |
| 1388-1608, gnl|Mm7|chr9 (21558127-21558347) | |
| 1388-1608, gnl|monDom2|scaffold_106 (3007211-3007396) | |
| 1388-1608, gnl|oryCun1|scaffold_189208 (12444-12629) | |
| 1388-1608, gnl|panTro1|chr11 (2074206-2074391) | |
| 1388-1608, gnl|rheMac2|chr19 (10852936-10853121) | |
| 1388-1608, gnl|rn3|chr8 (20789161-20789346) | |
| 1388-1608, gnl|tetNig1|chr18 (3663115-3663300) | |
| 1388-1608, gnl|xenTro1|scaffold_1142 (90685-90500) |
| Aligned organism(s): 78 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 151-399, gnl|bosTau2|chr7 (10137737-10137985) | |
| 151-399, gnl|canFam2|chr20 (53216137-53215890) | |
| 151-399, gnl|danRer3|chr3 (9924640-9924378) | |
| 151-399, gnl|dasNov1|scaffold_25676 (69648-69402) | |
| 151-399, gnl|echTel1|scaffold_287419 (27713-27459) | |
| 151-399, gnl|fr1|chrUn (91992366-91992613) | |
| 151-399, gnl|galGal2|chrZ_random (665275-665522) | |
| 151-399, gnl|hg17|chr19 (10993399-10993657) | |
| 151-399, gnl|Hg17|chr19 (10993399-10993647) | |
| 151-399, gnl|loxAfr1|scaffold_25347 (20113-20367) | |
| 151-399, gnl|mm7|chr9 (21546363-21546617) | |
| 151-399, gnl|Mm7|chr9 (21546363-21546611) | |
| 151-399, gnl|monDom2|scaffold_106 (2994089-2994347) | |
| 151-399, gnl|oryCun1|scaffold_189208 (409-659) | |
| 151-399, gnl|panTro1|chr20 (11393338-11393596) | |
| 151-399, gnl|rheMac2|chr19 (10838514-10838772) | |
| 151-399, gnl|rn3|chr8 (20776737-20776991) | |
| 151-399, gnl|tetNig1|chr18 (3660768-3661015) | |
| 151-399, gnl|xenTro1|scaffold_1142 (96530-96274) | |
| 508-618, gnl|bosTau2|chr7 (10140018-10140128) | |
| 508-618, gnl|Hg17|chr19 (10996005-10996115) | |
| 508-618, gnl|Mm7|chr9 (21548746-21548856) | |
| 751-919, gnl|bosTau2|chr7 (10144100-10144268) | |
| 751-919, gnl|canFam2|chr20 (53209764-53209574) | |
| 751-919, gnl|danRer3|chr3 (9921482-9921305) | |
| 751-919, gnl|dasNov1|scaffold_294922 (578-388) | |
| 751-919, gnl|echTel1|scaffold_287419 (21796-21610) | |
| 751-919, gnl|fr1|chrUn (91993615-91993789) | |
| 751-919, gnl|galGal2|chrZ_random (673833-674010) | |
| 751-919, gnl|hg17|chr19 (10999454-10999644) | |
| 751-919, gnl|Hg17|chr19 (10999459-10999627) | |
| 751-919, gnl|loxAfr1|scaffold_11798 (25878-25699) | |
| 751-919, gnl|mm7|chr9 (21552363-21552552) | |
| 751-919, gnl|Mm7|chr9 (21552368-21552536) | |
| 751-919, gnl|monDom2|scaffold_106 (3002153-3002336) | |
| 751-919, gnl|oryCun1|scaffold_189208 (6080-6254) | |
| 751-919, gnl|panTro1|chr20 (11399395-11399585) | |
| 751-919, gnl|rheMac2|chr19 (10845825-10846019) | |
| 751-919, gnl|rn3|chr8 (20783058-20783248) | |
| 751-919, gnl|tetNig1|chr18 (3661987-3662163) | |
| 751-919, gnl|xenTro1|scaffold_1142 (92552-92372) | |
| 979-1132, gnl|bosTau2|chr21 (8087406-8087559) | |
| 979-1132, gnl|canFam2|chr3 (50008414-50008250) | |
| 979-1132, gnl|danRer3|chrUn (64942218-64942378) | |
| 979-1132, gnl|dasNov1|scaffold_159655 (1339-1176) | |
| 979-1132, gnl|echTel1|scaffold_240663 (945-1109) | |
| 979-1132, gnl|fr1|chrUn (63949555-63949398) | |
| 979-1132, gnl|galGal2|chr10 (15225874-15226036) | |
| 979-1132, gnl|hg17|chr15 (91322466-91322630) | |
| 979-1132, gnl|Hg17|chr15 (91322466-91322619) | |
| 979-1132, gnl|loxAfr1|scaffold_109651 (443-607) | |
| 979-1132, gnl|mm7|chr7 (69328252-69328088) | |
| 979-1132, gnl|Mm7|chr7 (69328250-69328097) | |
| 979-1132, gnl|monDom2|scaffold_12 (69270778-69270614) | |
| 979-1132, gnl|oryCun1|scaffold_129276 (16953-16781) | |
| 979-1132, gnl|panTro1|chr16 (92295028-92295192) | |
| 979-1132, gnl|rheMac2|chr7 (72835230-72835394) | |
| 979-1132, gnl|rn3|chr1 (128734361-128734197) | |
| 979-1132, gnl|tetNig1|chrUn_random (135304644-135304491) | |
| 979-1132, gnl|xenTro1|scaffold_71 (2011907-2012071) | |
| 1388-1608, gnl|bosTau2|chr7 (10150744-10150964) | |
| 1388-1608, gnl|canFam2|chr20 (53202823-53202638) | |
| 1388-1608, gnl|danRer3|chr3 (9915450-9915258) | |
| 1388-1608, gnl|dasNov1|scaffold_50647 (8-195) | |
| 1388-1608, gnl|echTel1|scaffold_287419 (14889-14704) | |
| 1388-1608, gnl|fr1|chrUn (91994761-91994946) | |
| 1388-1608, gnl|galGal2|chrZ_random (685344-685529) | |
| 1388-1608, gnl|hg17|chr19 (11006587-11006772) | |
| 1388-1608, gnl|Hg17|chr19 (11006589-11006809) | |
| 1388-1608, gnl|mm7|chr9 (21558125-21558310) | |
| 1388-1608, gnl|Mm7|chr9 (21558127-21558347) | |
| 1388-1608, gnl|monDom2|scaffold_106 (3007211-3007396) | |
| 1388-1608, gnl|oryCun1|scaffold_189208 (12444-12629) | |
| 1388-1608, gnl|panTro1|chr11 (2074206-2074391) | |
| 1388-1608, gnl|rheMac2|chr19 (10852936-10853121) | |
| 1388-1608, gnl|rn3|chr8 (20789161-20789346) | |
| 1388-1608, gnl|tetNig1|chr18 (3663115-3663300) | |
| 1388-1608, gnl|xenTro1|scaffold_1142 (90685-90500) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hyp (0.142837) |