Ss1.1-Thy1-THY010030E04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCCGGGGCGCCGCCCCGGAAGTAGAGCGCGGAGGGTGGGTTCGCTTGATAGCGGGCCGC GTCCTCCCGCAGGAGCCGGAGTGGAGCTGGAGGCGGGGCCGGGGTGCGGCGCGGGGCCGC CGTGCTCCGCGCTCCTGGGCGCCCCTCCGGGCTGGACGCCCACAGAAGGACGTCGCAGGA AGACAATCTGCCATCAGGTAAGAAACCGAGGCAAGAGTGGGTGAAACTGAAGAGCGATTG GACGTTGCCGTTGGCCCCAGACGTACCTATGATTCTTTTCCCATGAAGGTTATTACAAAA TATTGTGTAGAGTTCCCTGTGCTATATGGACGATGGCGGGAAAAGTGAAATGGGTCACTG ACATCGAGAAGTCGGTGCTGATCAACAACTTCGAGAAGCGAGGATGGGTGCAGGTGACGG AGAGCGAGGACTGGAATTTCTACTGGATGAGCGTGCAAACCATCCGCAATGTTTTCAGTG TGGAAACTGGCTATCGGCTCTCGGACGACCAAATCGTCAACCATTTCCCAAACCACTATG AGCTGACGCGGAAGGATCTGATGGTGAAGAACATCAAGCGGTACCGGAAGGAGCTGGAGA AGGAAGGGAGCCCCCTGGCGGAGAAGGACGAAAGTGGGAAATACCTCTACCTGGACTTTG TCCCTGTCACCTACATGCTGCCCGCCGACTACAACCTGTTTGTGGAGGAGTTCCGGAAAA GCCCCTCCAGCACCTGGATCATGAAACCTTGTGGCAGAGCCCAGGGCAAGGGTATCTTTC TGATCAACAAGCTCTCGCAGATCAAAAAGTGGTCCCGGGACAGCAAAACCTCTTCGTTCG TGTCTCAGTCGCCCAAGGAGGCCTACGTGATCTCTCTGTACATCAGCAACCCGCTCCTCA TCGGCGGCAGGAAGTTCGACCTGCGCTTGTACGTCCTGGTGTCCACGTACCGCCCCCTGC GCTGCTACATGTACAAACTCGGGTTTTGCCGCTTTTGCACCGTGAAGTACACCCCCAGCA CCAGTGAGCTGGATAACATGTTCGTTCATCTCACCAACGTTGCCATTCAGAAACACGGGG AGGACTACAACCACATCCACGGGGGCAAGTGGACGGTCAGCAACCTGCGGCTCTACCTCG AGAGCACCCGCGGCAAGGAGGTGACCAGCAAGCTGTTCGACGAGATCCACTGGATCATCG TGCAGTCTCTGAAGGCCGTGGCCCCGGTGATGAACAACGACAAACACTGCTTCGAGTGCT ACGGCTACGACATCATCATCGACGACAGGCTGAAGCCCTGGCTGATCGAGGTCAACGCGT CTCCATCGCTCACCTCCAGCACCGCCAACGATCGAATCCTCAAGTATAACCTGATCAACG ACACCCTCAACATCGCGGTCCCCAACGGCGAGGTTCCCGACTGTAAATGGAACAAGTCCC CCCCCAAGGAGGTCCTCGGCAATTACGAGATCCTGTACGACGAGGAGCTGGCACAAGGGG ACGGGGCTGACCGGGAGCTGAGAAGTCGGCCGGGCCCGTCCCTGGGGCCCAGAGGGGGCC GATCGAGAGACTCGGGGAGAGCCACCCTCACAACCTGGAAGTGACCGCAGCGAGACCCCA GCCTCGACCCACCCGTGCAGAACTTGTCACTGCACCCCCCCCGTCCAAGACCTATTTTGG AATTCCATTTTTCTAGAGCTTTTTTCCTTTCCTAAACCCTGTAAATAAATAAAGGCACTT CTTTGGAAGGTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCCGGGGCGCCGCCCCGGAAGTAGAGCGCGGAGGGTGGGTTCGCTTGATAGCGGGCCGC GTCCTCCCGCAGGAGCCGGAGTGGAGCTGGAGGCGGGGCCGGGGTGCGGCGCGGGGCCGC CGTGCTCCGCGCTCCTGGGCGCCCCTCCGGGCTGGACGCCCACAGAAGGACGTCGCAGGA AGACAATCTGCCATCAGGTAAGAAACCGAGGCAAGAGTGGGTGAAACTGAAGAGCGATTG GACGTTGCCGTTGGCCCCAGACGTACCTATGATTCTTTTCCCATGAAGGTTATTACAAAA TATTGTGTAGAGTTCCCTGTGCTATATGGACGATGGCGGGAAAAGTGAAATGGGTCACTG ACATCGAGAAGTCGGTGCTGATCAACAACTTCGAGAAGCGAGGATGGGTGCAGGTGACGG AGAGCGAGGACTGGAATTTCTACTGGATGAGCGTGCAAACCATCCGCAATGTTTTCAGTG TGGAAACTGGCTATCGGCTCTCGGACGACCAAATCGTCAACCATTTCCCAAACCACTATG AGCTGACGCGGAAGGATCTGATGGTGAAGAACATCAAGCGGTACCGGAAGGAGCTGGAGA AGGAAGGGAGCCCCCTGGCGGAGAAGGACGAAAGTGGGAAATACCTCTACCTGGACTTTG TCCCTGTCACCTACATGCTGCCCGCCGACTACAACCTGTTTGTGGAGGAGTTCCGGAAAA GCCCCTCCAGCACCTGGATCATGAAACCTTGTGGCAGAGCCCAGGGCAAGGGTATCTTTC TGATCAACAAGCTCTCGCAGATCAAAAAGTGGTCCCGGGACAGCAAAACCTCTTCGTTCG TGTCTCAGTCGCCCAAGGAGGCCTACGTGATCTCTCTGTACATCAGCAACCCGCTCCTCA TCGGCGGCAGGAAGTTCGACCTGCGCTTGTACGTCCTGGTGTCCACGTACCGCCCCCTGC GCTGCTACATGTACAAACTCGGGTTTTGCCGCTTTTGCACCGTGAAGTACACCCCCAGCA CCAGTGAGCTGGATAACATGTTCGTTCATCTCACCAACGTTGCCATTCAGAAACACGGGG AGGACTACAACCACATCCACGGGGGCAAGTGGACGGTCAGCAACCTGCGGCTCTACCTCG AGAGCACCCGCGGCAAGGAGGTGACCAGCAAGCTGTTCGACGAGATCCACTGGATCATCG TGCAGTCTCTGAAGGCCGTGGCCCCGGTGATGAACAACGACAAACACTGCTTCGAGTGCT ACGGCTACGACATCATCATCGACGACAGGCTGAAGCCCTGGCTGATCGAGGTCAACGCGT CTCCATCGCTCACCTCCAGCACCGCCAACGATCGAATCCTCAAGTATAACCTGATCAACG ACACCCTCAACATCGCGGTCCCCAACGGCGAGGTTCCCGACTGTAAATGGAACAAGTCCC CCCCCAAGGAGGTCCTCGGCAATTACGAGATCCTGTACGACGAGGAGCTGGCACAAGGGG ACGGGGCTGACCGGGAGCTGAGAAGTCGGCCGGGCCCGTCCCTGGGGCCCAGAGGGGGCC GATCGAGAGACTCGGGGAGAGCCACCCTCACAACCTGGAAGTGACCGCAGCGAGACCCCA GCCTCGACCCACCCGTGCAGAACTTGTCACTGCACCCCCCCCGTCCAAGACCTATTTTGG AATTCCATTTTTCTAGAGCTTTTTTCCTTTCCTAAACCCTGTAAATAAATAAAGGCACTT CTTTGGAAGGTC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
| 1-165, gnl|bosTau2|chr5 (71743057-71742884) | |
| 1-165, gnl|canFam2|chr10 (25520343-25519909) | |
| 1-165, gnl|hg17|chr22 (41809549-41809996) | |
| 1-165, gnl|Hg17|chr22 (41809957-41809781) | |
| 1-165, gnl|loxAfr1|scaffold_29551 (7404-6982) | |
| 1-165, gnl|mm7|chr15 (83593091-83593369) | |
| 1-165, gnl|panTro1|chr23 (42070249-42070696) | |
| 1-165, gnl|rheMac2|chr10 (87063323-87063802) | |
| 1-165, gnl|rn3|chr7 (121454476-121454197) | |
| 445-671, gnl|bosTau2|chr5 (71727161-71726934) | |
| 445-671, gnl|Hg17|chr22 (41790349-41790122) | |
| 445-671, gnl|Mm7|chr15 (83584611-83584385) | |
| 836-988, gnl|bosTau2|chr5 (71724207-71724055) | |
| 836-988, gnl|canFam2|chr10 (25537973-25537834) | |
| 836-988, gnl|danRer3|chrNA (55676077-55675923) | |
| 836-988, gnl|dasNov1|scaffold_43616 (4944-4805) | |
| 836-988, gnl|echTel1|scaffold_211804 (10778-10643) | |
| 836-988, gnl|fr1|chrUn (212066719-212066575) | |
| 836-988, gnl|galGal2|chr1 (65078871-65079011) | |
| 836-988, gnl|hg17|chr22 (41784688-41784842) | |
| 836-988, gnl|Hg17|chr22 (41784828-41784673) | |
| 836-988, gnl|mm7|chr15 (83580472-83580606) | |
| 836-988, gnl|Mm7|chr15 (83580607-83580468) | |
| 836-988, gnl|monDom2|scaffold_119 (2902525-2902379) | |
| 836-988, gnl|oryCun1|scaffold_109275 (4430-4298) | |
| 836-988, gnl|panTro1|chr23 (42045526-42045665) | |
| 836-988, gnl|rheMac2|chr10 (87042792-87042931) | |
| 836-988, gnl|rn3|chr7 (121468936-121468802) | |
| 836-988, gnl|tetNig1|chr19 (1649813-1649659) | |
| 836-988, gnl|xenTro1|scaffold_1500 (128589-128448) | |
| 1079-1222, gnl|bosTau2|chr5 (71719078-71718935) | |
| 1079-1222, gnl|canFam2|chr10 (25542195-25542012) | |
| 1079-1222, gnl|danRer3|chrNA (55679248-55679094) | |
| 1079-1222, gnl|echTel1|scaffold_211804 (11028-10886) | |
| 1079-1222, gnl|fr1|chrUn (212067236-212067069) | |
| 1079-1222, gnl|galGal2|chr1 (65075687-65075862) | |
| 1079-1222, gnl|hg17|chr22 (41779865-41780047) | |
| 1079-1222, gnl|Hg17|chr22 (41780032-41779889) | |
| 1079-1222, gnl|loxAfr1|scaffold_28814 (5418-5258) | |
| 1079-1222, gnl|mm7|chr15 (83578572-83578749) | |
| 1079-1222, gnl|Mm7|chr15 (83578737-83578594) | |
| 1079-1222, gnl|monDom2|scaffold_119 (2906797-2906621) | |
| 1079-1222, gnl|oryCun1|scaffold_195838 (9498-9681) | |
| 1079-1222, gnl|panTro1|chr23 (42040685-42040867) | |
| 1079-1222, gnl|rheMac2|chr10 (87037215-87037398) | |
| 1079-1222, gnl|rn3|chr7 (121471752-121471575) | |
| 1079-1222, gnl|tetNig1|chr19 (1650303-1650145) | |
| 1079-1222, gnl|xenTro1|scaffold_1116 (231581-231770) | |
| 1475-1751, gnl|bosTau2|chr5 (71708096-71707808) | |
| 1475-1751, gnl|Hg17|chr22 (41760409-41760145) | |
| 1475-1751, gnl|Mm7|chr15 (83566634-83566365) |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-165, gnl|bosTau2|chr5 (71743057-71742884) | |
| 1-165, gnl|canFam2|chr10 (25520343-25519909) | |
| 1-165, gnl|hg17|chr22 (41809549-41809996) | |
| 1-165, gnl|Hg17|chr22 (41809957-41809781) | |
| 1-165, gnl|loxAfr1|scaffold_29551 (7404-6982) | |
| 1-165, gnl|mm7|chr15 (83593091-83593369) | |
| 1-165, gnl|panTro1|chr23 (42070249-42070696) | |
| 1-165, gnl|rheMac2|chr10 (87063323-87063802) | |
| 1-165, gnl|rn3|chr7 (121454476-121454197) | |
| 445-671, gnl|bosTau2|chr5 (71727161-71726934) | |
| 445-671, gnl|Hg17|chr22 (41790349-41790122) | |
| 445-671, gnl|Mm7|chr15 (83584611-83584385) | |
| 836-988, gnl|bosTau2|chr5 (71724207-71724055) | |
| 836-988, gnl|canFam2|chr10 (25537973-25537834) | |
| 836-988, gnl|danRer3|chrNA (55676077-55675923) | |
| 836-988, gnl|dasNov1|scaffold_43616 (4944-4805) | |
| 836-988, gnl|echTel1|scaffold_211804 (10778-10643) | |
| 836-988, gnl|fr1|chrUn (212066719-212066575) | |
| 836-988, gnl|galGal2|chr1 (65078871-65079011) | |
| 836-988, gnl|hg17|chr22 (41784688-41784842) | |
| 836-988, gnl|Hg17|chr22 (41784828-41784673) | |
| 836-988, gnl|mm7|chr15 (83580472-83580606) | |
| 836-988, gnl|Mm7|chr15 (83580607-83580468) | |
| 836-988, gnl|monDom2|scaffold_119 (2902525-2902379) | |
| 836-988, gnl|oryCun1|scaffold_109275 (4430-4298) | |
| 836-988, gnl|panTro1|chr23 (42045526-42045665) | |
| 836-988, gnl|rheMac2|chr10 (87042792-87042931) | |
| 836-988, gnl|rn3|chr7 (121468936-121468802) | |
| 836-988, gnl|tetNig1|chr19 (1649813-1649659) | |
| 836-988, gnl|xenTro1|scaffold_1500 (128589-128448) | |
| 1079-1222, gnl|bosTau2|chr5 (71719078-71718935) | |
| 1079-1222, gnl|canFam2|chr10 (25542195-25542012) | |
| 1079-1222, gnl|danRer3|chrNA (55679248-55679094) | |
| 1079-1222, gnl|echTel1|scaffold_211804 (11028-10886) | |
| 1079-1222, gnl|fr1|chrUn (212067236-212067069) | |
| 1079-1222, gnl|galGal2|chr1 (65075687-65075862) | |
| 1079-1222, gnl|hg17|chr22 (41779865-41780047) | |
| 1079-1222, gnl|Hg17|chr22 (41780032-41779889) | |
| 1079-1222, gnl|loxAfr1|scaffold_28814 (5418-5258) | |
| 1079-1222, gnl|mm7|chr15 (83578572-83578749) | |
| 1079-1222, gnl|Mm7|chr15 (83578737-83578594) | |
| 1079-1222, gnl|monDom2|scaffold_119 (2906797-2906621) | |
| 1079-1222, gnl|oryCun1|scaffold_195838 (9498-9681) | |
| 1079-1222, gnl|panTro1|chr23 (42040685-42040867) | |
| 1079-1222, gnl|rheMac2|chr10 (87037215-87037398) | |
| 1079-1222, gnl|rn3|chr7 (121471752-121471575) | |
| 1079-1222, gnl|tetNig1|chr19 (1650303-1650145) | |
| 1079-1222, gnl|xenTro1|scaffold_1116 (231581-231770) | |
| 1475-1751, gnl|bosTau2|chr5 (71708096-71707808) | |
| 1475-1751, gnl|Hg17|chr22 (41760409-41760145) | |
| 1475-1751, gnl|Mm7|chr15 (83566634-83566365) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| ece (0.45861) | |
| ecc (0.345105) | |
| ebs (0.236602) | |
| ill (0.175593) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| nmm (0.132802) | |
| eep (0.122564) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.45861) | |
| ecc (0.345105) | |
| ebs (0.236602) | |
| ill (0.175593) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| nmm (0.132802) | |
| eep (0.122564) |