Ss1.1-Thy1-THY010030H04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAATTTTCTCGGAGGTAGAAAATGTTGTTAGCCCAAATAAATCGAGACTCTCAGGGAATG ACGGAGTTTCCTGGAGGAGGAATGGAGACTCAGCATGTTACCTTGTGCCTGACAGAGGCA GTAACTGTGGCAGATGGTGACAATCTAGAGAACATGGAAGGTGTAAGCTTGCAAGCAGTC ACGCTTGCAGATGGCTCTACTGCTTACATACAGCACAGCTCTAAAGATGGAAAACTCATA GACGGTCAGGTCATTCAGCTGGAGGATGGTTCTGCTGCCTATGTCCAGCATGTACCCATC CCTAAAAGCAGGGACAGTTTGCGTTTAGAGGATGGTCAAGCAGTCCAGCTAGAAGATGGC ACTACAGCATTTATTCATCATACCTCCAAAGACAGTTATGACCAGAGTGCGTTACAGGCA GTTCAGCTGGAAGACGGCACCACAGCGTACATCCACCATGCCGTGCAGGTCCCACAGTCC GACACCATCCTGGCAATTCAGGCTGATGGGACAGTGGCAGGTCTGCACACTGGGGACGCC ACCATTGACCCCGACACCATCAGTGCTTTGGAACAGTACGCAGCAAAGGTGTCCATTGAT GGGAGTGAAAGTGTAACAGGTTCTGGAATGATTGGAGAAAATGAGCAAGAGAAAAAAATG CAGATTGTCTTGCAAGGACATGCAACAAGAGTAACTGCTAAATCTCAGCAGAGTGGAGAG AAGGCCTTTCGATGTGGATATGATGGATGTGGAAAGTTATATACAACAGGCCATCATCTT AAGGTCCATGAGCGGTCACACACAGGGGACCGGCCG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAATTTTCTCGGAGGTAGAAAATGTTGTTAGCCCAAATAAATCGAGACTCTCAGGGAATG ACGGAGTTTCCTGGAGGAGGAATGGAGACTCAGCATGTTACCTTGTGCCTGACAGAGGCA GTAACTGTGGCAGATGGTGACAATCTAGAGAACATGGAAGGTGTAAGCTTGCAAGCAGTC ACGCTTGCAGATGGCTCTACTGCTTACATACAGCACAGCTCTAAAGATGGAAAACTCATA GACGGTCAGGTCATTCAGCTGGAGGATGGTTCTGCTGCCTATGTCCAGCATGTACCCATC CCTAAAAGCAGGGACAGTTTGCGTTTAGAGGATGGTCAAGCAGTCCAGCTAGAAGATGGC ACTACAGCATTTATTCATCATACCTCCAAAGACAGTTATGACCAGAGTGCGTTACAGGCA GTTCAGCTGGAAGACGGCACCACAGCGTACATCCACCATGCCGTGCAGGTCCCACAGTCC GACACCATCCTGGCAATTCAGGCTGATGGGACAGTGGCAGGTCTGCACACTGGGGACGCC ACCATTGACCCCGACACCATCAGTGCTTTGGAACAGTACGCAGCAAAGGTGTCCATTGAT GGGAGTGAAAGTGTAACAGGTTCTGGAATGATTGGAGAAAATGAGCAAGAGAAAAAAATG CAGATTGTCTTGCAAGGACATGCAACAAGAGTAACTGCTAAATCTCAGCAGAGTGGAGAG AAGGCCTTTCGATGTGGATATGATGGATGTGGAAAGTTATATACAACAGGCCATCATCTT AAGGTCCATGAGCGGTCACACACAGGGGACCGGCCG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 429-548, - strand, RNAz p=0.95204 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 429-548, - strand, RNAz p=0.95204 |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 4-136, gnl|bosTau2|chr15 (25800845-25800977) | |
| 4-136, gnl|Hg17|chr11 (9449414-9449546) | |
| 4-136, gnl|Mm7|chr7 (105984744-105984876) | |
| 390-590, gnl|bosTau2|chr15 (25804157-25804357) | |
| 390-590, gnl|canFam2|chr21 (35967783-35967986) | |
| 390-590, gnl|danRer3|chr18 (18116604-18116414) | |
| 390-590, gnl|dasNov1|scaffold_13096 (14066-13863) | |
| 390-590, gnl|echTel1|scaffold_297172 (13701-13501) | |
| 390-590, gnl|fr1|chrUn (268783326-268783529) | |
| 390-590, gnl|galGal2|chr5 (6870753-6870550) | |
| 390-590, gnl|hg17|chr11 (9456511-9456714) | |
| 390-590, gnl|Hg17|chr11 (9456511-9456711) | |
| 390-590, gnl|loxAfr1|scaffold_9419 (7333-7536) | |
| 390-590, gnl|mm7|chr7 (105989337-105989540) | |
| 390-590, gnl|Mm7|chr7 (105989337-105989537) | |
| 390-590, gnl|monDom2|scaffold_10 (59707493-59707696) | |
| 390-590, gnl|oryCun1|scaffold_203754 (46327-46530) | |
| 390-590, gnl|panTro1|chr9 (9638029-9638232) | |
| 390-590, gnl|rheMac2|chr14 (62463577-62463374) | |
| 390-590, gnl|rn3|chr1 (167828597-167828800) | |
| 390-590, gnl|tetNig1|chr13 (11531283-11531485) | |
| 390-590, gnl|xenTro1|scaffold_37 (2641357-2641155) | |
| 662-785, gnl|bosTau2|chr15 (25816633-25816756) | |
| 662-785, gnl|canFam2|chr21 (35978843-35978939) | |
| 662-785, gnl|danRer3|chr18 (18115670-18115577) | |
| 662-785, gnl|echTel1|scaffold_322904 (3600-3696) | |
| 662-785, gnl|fr1|chrUn (268783806-268783896) | |
| 662-785, gnl|galGal2|chr5 (6864357-6864261) | |
| 662-785, gnl|hg17|chr11 (9472765-9472861) | |
| 662-785, gnl|Hg17|chr11 (9472767-9472890) | |
| 662-785, gnl|loxAfr1|scaffold_9419 (25300-25396) | |
| 662-785, gnl|mm7|chr7 (105992324-105992420) | |
| 662-785, gnl|Mm7|chr7 (105992326-105992449) | |
| 662-785, gnl|monDom2|scaffold_10 (59712201-59712297) | |
| 662-785, gnl|panTro1|chr9 (9651230-9651326) | |
| 662-785, gnl|rheMac2|chr14 (62448306-62448210) | |
| 662-785, gnl|rn3|chr1 (167831376-167831472) | |
| 662-785, gnl|tetNig1|chr13 (11531701-11531791) | |
| 662-785, gnl|xenTro1|scaffold_37 (2639660-2639567) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 4-136, gnl|bosTau2|chr15 (25800845-25800977) | |
| 4-136, gnl|Hg17|chr11 (9449414-9449546) | |
| 4-136, gnl|Mm7|chr7 (105984744-105984876) | |
| 390-590, gnl|bosTau2|chr15 (25804157-25804357) | |
| 390-590, gnl|canFam2|chr21 (35967783-35967986) | |
| 390-590, gnl|danRer3|chr18 (18116604-18116414) | |
| 390-590, gnl|dasNov1|scaffold_13096 (14066-13863) | |
| 390-590, gnl|echTel1|scaffold_297172 (13701-13501) | |
| 390-590, gnl|fr1|chrUn (268783326-268783529) | |
| 390-590, gnl|galGal2|chr5 (6870753-6870550) | |
| 390-590, gnl|hg17|chr11 (9456511-9456714) | |
| 390-590, gnl|Hg17|chr11 (9456511-9456711) | |
| 390-590, gnl|loxAfr1|scaffold_9419 (7333-7536) | |
| 390-590, gnl|mm7|chr7 (105989337-105989540) | |
| 390-590, gnl|Mm7|chr7 (105989337-105989537) | |
| 390-590, gnl|monDom2|scaffold_10 (59707493-59707696) | |
| 390-590, gnl|oryCun1|scaffold_203754 (46327-46530) | |
| 390-590, gnl|panTro1|chr9 (9638029-9638232) | |
| 390-590, gnl|rheMac2|chr14 (62463577-62463374) | |
| 390-590, gnl|rn3|chr1 (167828597-167828800) | |
| 390-590, gnl|tetNig1|chr13 (11531283-11531485) | |
| 390-590, gnl|xenTro1|scaffold_37 (2641357-2641155) | |
| 662-785, gnl|bosTau2|chr15 (25816633-25816756) | |
| 662-785, gnl|canFam2|chr21 (35978843-35978939) | |
| 662-785, gnl|danRer3|chr18 (18115670-18115577) | |
| 662-785, gnl|echTel1|scaffold_322904 (3600-3696) | |
| 662-785, gnl|fr1|chrUn (268783806-268783896) | |
| 662-785, gnl|galGal2|chr5 (6864357-6864261) | |
| 662-785, gnl|hg17|chr11 (9472765-9472861) | |
| 662-785, gnl|Hg17|chr11 (9472767-9472890) | |
| 662-785, gnl|loxAfr1|scaffold_9419 (25300-25396) | |
| 662-785, gnl|mm7|chr7 (105992324-105992420) | |
| 662-785, gnl|Mm7|chr7 (105992326-105992449) | |
| 662-785, gnl|monDom2|scaffold_10 (59712201-59712297) | |
| 662-785, gnl|panTro1|chr9 (9651230-9651326) | |
| 662-785, gnl|rheMac2|chr14 (62448306-62448210) | |
| 662-785, gnl|rn3|chr1 (167831376-167831472) | |
| 662-785, gnl|tetNig1|chr13 (11531701-11531791) | |
| 662-785, gnl|xenTro1|scaffold_37 (2639660-2639567) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.191681) |