Ss1.1-Thy1-THY010030H07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCCGACGTGTCTCTCAGGAAGAGGAAGGGGTAAGAACACAGCGACATGGCGCCACCGGC ACCCGGCCCGGCCTCCGGCGGCTCCGGGGAAGTAGATGAGTTGTTCGACGTAAAGAATGC CTTCTACATTGGCAGCTACCAACAGTGCATCAACGAGGCTCAGCGGGTGAAGCCATCAAG CCCCGAGAGAGATGTGGAAAGGGATGTCTTCCTGTACAGAGCATACCTCGCACAGAGGAA GTTCGGCGTGGTCCTCGACGAGATCAAGCCCTCCTCGGCACCTGAGCTCCAGGCCATCCG CATGTTTGCTGAGTACCTGGCTAGCGACAGCCGGCGGGATGCGATTGTGGCCGAGCTGGA CCGGGAGATGAGCCGGAGCGTGGACGTGACCAACACCACCTTCCTGCTCATGGCTGCCTC CATCTACTTCCATGACCAGAACCCGGACGCCGCCCTGCGCACCCTGCACCAAGGGGACAG CCTGGAGTGCATGGCCATGACGGTGCAGATCCTGCTGAAGCTAGACCGCCTGGACCTCGC CCGGAAAGAGCTGAAGAAAATGCAGGACCAGGACGAGGATGCCACCCTCACCCAGCTGGC CACCGCCTGGGTCAACCTGGCTGTGGGTGGTGAGAAGCTGCAGGATGCCTACTACATCTT CCAAGAGATGGCTGACAAGTGCTCGTCTACCCTGCTGCTACTCAATGGGCAGGCAGCCTG CCACATGGCCCAGGGCCGGTGGGAGGCCGCCGAGGGTGTGCTGCAGGAGGCCCTGGACAA GGACAGCAGCCACCCAGAGACACTGATCAACCTCATTGTCCTGTCCCAGCATCTGGGGAA GCCTCCTGAGGTGACAAACCGCTACCTGTCCCAGCTGAAGGACGCCCACAGGACCCACCC CTTCATCAAGGAGTACCATGCCAAGGAAAACGACTTTGACAGACTGGTGCTGCAGTATGC TCCCAGTGCCTGAGGTTGGCCTGAGACGTACTTCCGGAGCCGTGGGAATACAAGGCCAAG GCTGTGCTGCCCCCCGCCACGGGCACTTACCCTTTAACCAGGAGCAGAGGCTGTAAGCCC AGCCCAGTCCCTGTTTTGTCAATAAACGTCTCCACTCCAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCCGACGTGTCTCTCAGGAAGAGGAAGGGGTAAGAACACAGCGACATGGCGCCACCGGC ACCCGGCCCGGCCTCCGGCGGCTCCGGGGAAGTAGATGAGTTGTTCGACGTAAAGAATGC CTTCTACATTGGCAGCTACCAACAGTGCATCAACGAGGCTCAGCGGGTGAAGCCATCAAG CCCCGAGAGAGATGTGGAAAGGGATGTCTTCCTGTACAGAGCATACCTCGCACAGAGGAA GTTCGGCGTGGTCCTCGACGAGATCAAGCCCTCCTCGGCACCTGAGCTCCAGGCCATCCG CATGTTTGCTGAGTACCTGGCTAGCGACAGCCGGCGGGATGCGATTGTGGCCGAGCTGGA CCGGGAGATGAGCCGGAGCGTGGACGTGACCAACACCACCTTCCTGCTCATGGCTGCCTC CATCTACTTCCATGACCAGAACCCGGACGCCGCCCTGCGCACCCTGCACCAAGGGGACAG CCTGGAGTGCATGGCCATGACGGTGCAGATCCTGCTGAAGCTAGACCGCCTGGACCTCGC CCGGAAAGAGCTGAAGAAAATGCAGGACCAGGACGAGGATGCCACCCTCACCCAGCTGGC CACCGCCTGGGTCAACCTGGCTGTGGGTGGTGAGAAGCTGCAGGATGCCTACTACATCTT CCAAGAGATGGCTGACAAGTGCTCGTCTACCCTGCTGCTACTCAATGGGCAGGCAGCCTG CCACATGGCCCAGGGCCGGTGGGAGGCCGCCGAGGGTGTGCTGCAGGAGGCCCTGGACAA GGACAGCAGCCACCCAGAGACACTGATCAACCTCATTGTCCTGTCCCAGCATCTGGGGAA GCCTCCTGAGGTGACAAACCGCTACCTGTCCCAGCTGAAGGACGCCCACAGGACCCACCC CTTCATCAAGGAGTACCATGCCAAGGAAAACGACTTTGACAGACTGGTGCTGCAGTATGC TCCCAGTGCCTGAGGTTGGCCTGAGACGTACTTCCGGAGCCGTGGGAATACAAGGCCAAG GCTGTGCTGCCCCCCGCCACGGGCACTTACCCTTTAACCAGGAGCAGAGGCTGTAAGCCC AGCCCAGTCCCTGTTTTGTCAATAAACGTCTCCACTCCAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 989-1119, - strand, RNAz p=0.999937 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 989-1119, - strand, RNAz p=0.999937 |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 1-172, gnl|bosTau2|chr7 (2356957-2356786) | |
| 1-172, gnl|Hg17|chr19 (18891203-18891032) | |
| 1-172, gnl|Mm7|chr8 (68757968-68758136) | |
| 336-489, gnl|bosTau2|chr7 (2344518-2344365) | |
| 336-489, gnl|Hg17|chr19 (18878922-18878769) | |
| 336-489, gnl|Mm7|chr8 (68761702-68761855) | |
| 625-782, gnl|bosTau2|chr7 (2341715-2341558) | |
| 625-782, gnl|canFam2|chr20 (47210346-47210173) | |
| 625-782, gnl|danRer3|chrNA (86684815-86684645) | |
| 625-782, gnl|fr1|chrUn (73854838-73854673) | |
| 625-782, gnl|galGal2|chr28 (3093974-3093804) | |
| 625-782, gnl|hg17|chr19 (18875073-18875246) | |
| 625-782, gnl|Hg17|chr19 (18875233-18875076) | |
| 625-782, gnl|loxAfr1|scaffold_77425 (1115-941) | |
| 625-782, gnl|mm7|chr8 (68765701-68765530) | |
| 625-782, gnl|Mm7|chr8 (68765539-68765696) | |
| 625-782, gnl|monDom2|scaffold_75 (1636825-1636995) | |
| 625-782, gnl|panTro1|chr20 (19946995-19947168) | |
| 625-782, gnl|rheMac2|chr19 (18532947-18533120) | |
| 625-782, gnl|rn3|chr16 (19600718-19600889) | |
| 625-782, gnl|tetNig1|chr1 (11392576-11392403) | |
| 625-782, gnl|xenTro1|scaffold_788 (44974-45140) | |
| 883-1119, gnl|bosTau2|chr7 (2339073-2338835) | |
| 883-1119, gnl|canFam2|chr20 (47213862-47213571) | |
| 883-1119, gnl|hg17|chr19 (18871204-18871486) | |
| 883-1119, gnl|Hg17|chr19 (18871590-18871338) | |
| 883-1119, gnl|loxAfr1|scaffold_77425 (3850-3539) | |
| 883-1119, gnl|panTro1|chr20 (19943260-19943539) | |
| 883-1119, gnl|rheMac2|chr19 (18529293-18529572) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-172, gnl|bosTau2|chr7 (2356957-2356786) | |
| 1-172, gnl|Hg17|chr19 (18891203-18891032) | |
| 1-172, gnl|Mm7|chr8 (68757968-68758136) | |
| 336-489, gnl|bosTau2|chr7 (2344518-2344365) | |
| 336-489, gnl|Hg17|chr19 (18878922-18878769) | |
| 336-489, gnl|Mm7|chr8 (68761702-68761855) | |
| 625-782, gnl|bosTau2|chr7 (2341715-2341558) | |
| 625-782, gnl|canFam2|chr20 (47210346-47210173) | |
| 625-782, gnl|danRer3|chrNA (86684815-86684645) | |
| 625-782, gnl|fr1|chrUn (73854838-73854673) | |
| 625-782, gnl|galGal2|chr28 (3093974-3093804) | |
| 625-782, gnl|hg17|chr19 (18875073-18875246) | |
| 625-782, gnl|Hg17|chr19 (18875233-18875076) | |
| 625-782, gnl|loxAfr1|scaffold_77425 (1115-941) | |
| 625-782, gnl|mm7|chr8 (68765701-68765530) | |
| 625-782, gnl|Mm7|chr8 (68765539-68765696) | |
| 625-782, gnl|monDom2|scaffold_75 (1636825-1636995) | |
| 625-782, gnl|panTro1|chr20 (19946995-19947168) | |
| 625-782, gnl|rheMac2|chr19 (18532947-18533120) | |
| 625-782, gnl|rn3|chr16 (19600718-19600889) | |
| 625-782, gnl|tetNig1|chr1 (11392576-11392403) | |
| 625-782, gnl|xenTro1|scaffold_788 (44974-45140) | |
| 883-1119, gnl|bosTau2|chr7 (2339073-2338835) | |
| 883-1119, gnl|canFam2|chr20 (47213862-47213571) | |
| 883-1119, gnl|hg17|chr19 (18871204-18871486) | |
| 883-1119, gnl|Hg17|chr19 (18871590-18871338) | |
| 883-1119, gnl|loxAfr1|scaffold_77425 (3850-3539) | |
| 883-1119, gnl|panTro1|chr20 (19943260-19943539) | |
| 883-1119, gnl|rheMac2|chr19 (18529293-18529572) |
| Expressed library(ies): 33 entry(ies) | More info |
| Expressed library(ies): 33 entry(ies) | Help | Less info |
| hyp (0.571347) | |
| ece (0.45861) | |
| jca (0.45584) | |
| pla (0.401016) | |
| nmm (0.398406) | |
| elu (0.385356) | |
| nlu (0.383362) | |
| nep (0.36785) | |
| eru (0.360144) | |
| fbs (0.350693) | |
| duo (0.345602) | |
| nco (0.323468) | |
| cag (0.302389) | |
| nbm (0.297974) | |
| cov (0.264306) | |
| eep (0.245128) | |
| ebs (0.236602) | |
| eje (0.197668) | |
| fty (0.17584) | |
| nje (0.16592) | |
| cje (0.165235) | |
| csp (0.161186) | |
| cli (0.152812) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| ova (0.129132) | |
| ese (0.126502) | |
| cly (0.120642) | |
| med (0.116252) | |
| ecc (0.115035) | |
| cty (0.10408) |
| Expressed library(ies): 33 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hyp (0.571347) | |
| ece (0.45861) | |
| jca (0.45584) | |
| pla (0.401016) | |
| nmm (0.398406) | |
| elu (0.385356) | |
| nlu (0.383362) | |
| nep (0.36785) | |
| eru (0.360144) | |
| fbs (0.350693) | |
| duo (0.345602) | |
| nco (0.323468) | |
| cag (0.302389) | |
| nbm (0.297974) | |
| cov (0.264306) | |
| eep (0.245128) | |
| ebs (0.236602) | |
| eje (0.197668) | |
| fty (0.17584) | |
| nje (0.16592) | |
| cje (0.165235) | |
| csp (0.161186) | |
| cli (0.152812) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| ova (0.129132) | |
| ese (0.126502) | |
| cly (0.120642) | |
| med (0.116252) | |
| ecc (0.115035) | |
| cty (0.10408) |