Ss1.1-Thy1-THY010031A06.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGAGGGAAGCTCGGCGGCGGCGGCGGTGGCGCGCGGTGTCGAGCGGCGGCGAAGTTGCTT CTGAAGGGAGCCCAAGATGACCGGTTCTAACGAGTTCAAGCTGAACCAGCCACCCGAGGA CGGCATCTCCTCGGTGAAATTCAGCCCCAACACCTCCCAGTTCCTGTTGGTTTCTTCCTG GGACACATCCGTGCGCCTCTATGATGTGCCGGCCAACTCCATGCGGCTCAAGTACCAGCA CACGGGCGCCGTCCTGGACTGCGCCTTCTACGATCCAACGCATGCCTGGAGTGGGGGATT AGACCATCAATTAAAAATGCATGATTTGAATACCGATCAAGAAAACCTTGTTGGAACCCA TGATGCCCCTATCAGATGTGTTGAATATTGTCCAGAAGTGAATGTGATGGTTACTGGGAG CTGGGATCAGACAGTTAAATTGTGGGATCCCAGAACCCCTTGTAATGCTGGGACCTTTTC TCAGCCTGAAAAGGTGTACACCCTCTCAGTGTCTGGAGACCGGCTGATTGTGGGCACTGC CGGCCGCAGAGTGTTGGTGTGGGACTTGCGGAACATGGGCTACGTACAGCAGCGCCGGGA GTCCAGCCTGAAGTACCAGACTCGCTGCATACGGGCGTTTCCAAACAAGCAGGGTTATGT ATTAAGCTCCATTGAAGGCCGAGTGGCAGTTGAGTACTTGGACCCAAGGCCGCAGCTGAT GAAGAAGAAGTATGCCTTCAAGTGTCACCGACTAAAGGAAAATAACATTGAGCAGATTTA CCCAGTCAATGCCATCTCCTTTCACAATATCCATAATACTTTTGCCACAGGTGGTTCTGA TGGATTTGTTAATATTTGGGATCCATTTAACAAAAAGCGACTGTGCCAATTCCATCGGTA CCCCACCAGCATTGCATCCCTTGCCTTCAGTAATGATGGGACCACACTTGCTATAGCATC ATCTTATATGTATGAAATGGATGACACAGAACATCCCGAAGATGGTATCTTCATTCGCCA AGTGACAGATGCTTTTCTTCATTGCAGGTCCACCTAATCGTCTCGTGAAAGTGGTTTCTC TATGGAAAGCTTTGTTTTGCTTCCTACAAATACATGCTTATCCCCTAAGGGGTGCGTTAT AGTCATTGTGGACACTTTGCTTAGTATGTGGATTTCTCTGTTTTCTGTCTTAGCAAAACT TGTCTGTGTGCCCTTTTCATCCCAACTCTGTGTAGGATGAGGAGTCTTTGTGTCCTTGTG CAGTAGTCTGAAGAATTGTGGTCCCCCCCCCCCCCCAGCAAGCCCAGTTGCTGTGTATGA GCAGCTTGAGCTCTTTTTGTAAAATAACCTAAACTTGTTATTTCCATGCTGTCTAATAAA TCAGAGATTCAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGAGGGAAGCTCGGCGGCGGCGGCGGTGGCGCGCGGTGTCGAGCGGCGGCGAAGTTGCTT CTGAAGGGAGCCCAAGATGACCGGTTCTAACGAGTTCAAGCTGAACCAGCCACCCGAGGA CGGCATCTCCTCGGTGAAATTCAGCCCCAACACCTCCCAGTTCCTGTTGGTTTCTTCCTG GGACACATCCGTGCGCCTCTATGATGTGCCGGCCAACTCCATGCGGCTCAAGTACCAGCA CACGGGCGCCGTCCTGGACTGCGCCTTCTACGATCCAACGCATGCCTGGAGTGGGGGATT AGACCATCAATTAAAAATGCATGATTTGAATACCGATCAAGAAAACCTTGTTGGAACCCA TGATGCCCCTATCAGATGTGTTGAATATTGTCCAGAAGTGAATGTGATGGTTACTGGGAG CTGGGATCAGACAGTTAAATTGTGGGATCCCAGAACCCCTTGTAATGCTGGGACCTTTTC TCAGCCTGAAAAGGTGTACACCCTCTCAGTGTCTGGAGACCGGCTGATTGTGGGCACTGC CGGCCGCAGAGTGTTGGTGTGGGACTTGCGGAACATGGGCTACGTACAGCAGCGCCGGGA GTCCAGCCTGAAGTACCAGACTCGCTGCATACGGGCGTTTCCAAACAAGCAGGGTTATGT ATTAAGCTCCATTGAAGGCCGAGTGGCAGTTGAGTACTTGGACCCAAGGCCGCAGCTGAT GAAGAAGAAGTATGCCTTCAAGTGTCACCGACTAAAGGAAAATAACATTGAGCAGATTTA CCCAGTCAATGCCATCTCCTTTCACAATATCCATAATACTTTTGCCACAGGTGGTTCTGA TGGATTTGTTAATATTTGGGATCCATTTAACAAAAAGCGACTGTGCCAATTCCATCGGTA CCCCACCAGCATTGCATCCCTTGCCTTCAGTAATGATGGGACCACACTTGCTATAGCATC ATCTTATATGTATGAAATGGATGACACAGAACATCCCGAAGATGGTATCTTCATTCGCCA AGTGACAGATGCTTTTCTTCATTGCAGGTCCACCTAATCGTCTCGTGAAAGTGGTTTCTC TATGGAAAGCTTTGTTTTGCTTCCTACAAATACATGCTTATCCCCTAAGGGGTGCGTTAT AGTCATTGTGGACACTTTGCTTAGTATGTGGATTTCTCTGTTTTCTGTCTTAGCAAAACT TGTCTGTGTGCCCTTTTCATCCCAACTCTGTGTAGGATGAGGAGTCTTTGTGTCCTTGTG CAGTAGTCTGAAGAATTGTGGTCCCCCCCCCCCCCCAGCAAGCCCAGTTGCTGTGTATGA GCAGCTTGAGCTCTTTTTGTAAAATAACCTAAACTTGTTATTTCCATGCTGTCTAATAAA TCAGAGATTCAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 71-495, - strand, RNAz p=0.932051 | |
| 344-458, - strand, RNAz p=0.995261 | |
| 915-1032, - strand, RNAz p=0.716383 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 71-495, - strand, RNAz p=0.932051 | |
| 344-458, - strand, RNAz p=0.995261 | |
| 915-1032, - strand, RNAz p=0.716383 |
| Aligned organism(s): 76 entry(ies) | More info |
| Aligned organism(s): 76 entry(ies) | Help | Less info |
| 71-272, gnl|bosTau2|chr26 (27809289-27809088) | |
| 71-272, gnl|canFam2|chr10 (64649580-64649424) | |
| 71-272, gnl|danRer3|chrNA (203851666-203851507) | |
| 71-272, gnl|dasNov1|scaffold_1566 (65142-64976) | |
| 71-272, gnl|echTel1|scaffold_132872 (1392-1241) | |
| 71-272, gnl|fr1|chrUn (25385163-25385329) | |
| 71-272, gnl|galGal2|chr6 (30563455-30563612) | |
| 71-272, gnl|hg17|chr10 (124904414-124904580) | |
| 71-272, gnl|Hg17|chr10 (124904418-124904619) | |
| 71-272, gnl|loxAfr1|scaffold_1387 (16420-16556) | |
| 71-272, gnl|mm7|chr7 (127917418-127917584) | |
| 71-272, gnl|Mm7|chr7 (127917422-127917623) | |
| 71-272, gnl|monDom2|scaffold_14 (35743952-35743786) | |
| 71-272, gnl|oryCun1|scaffold_95260 (1479-1651) | |
| 71-272, gnl|panTro1|chr8 (127210416-127210582) | |
| 71-272, gnl|rheMac2|chr9 (122744341-122744507) | |
| 71-272, gnl|rn3|chr1 (191279091-191279257) | |
| 71-272, gnl|tetNig1|chr2_random (1562987-1563145) | |
| 71-272, gnl|xenTro1|scaffold_97 (1862244-1862401) | |
| 318-495, gnl|bosTau2|chr26 (27805902-27805727) | |
| 318-495, gnl|canFam2|chr28 (35696461-35696306) | |
| 318-495, gnl|danRer3|chrNA (203842540-203842733) | |
| 318-495, gnl|dasNov1|scaffold_1566 (62322-62477) | |
| 318-495, gnl|echTel1|scaffold_132872 (992-1141) | |
| 318-495, gnl|fr1|chrUn (25385805-25385635) | |
| 318-495, gnl|galGal2|chr6 (30565534-30565380) | |
| 318-495, gnl|Hg17|chr10 (124907213-124907388) | |
| 318-495, gnl|hg17|chr7 (108228595-108228750) | |
| 318-495, gnl|loxAfr1|scaffold_1387 (16811-16665) | |
| 318-495, gnl|mm7|chr17 (70537977-70537822) | |
| 318-495, gnl|Mm7|chr7 (127920030-127920205) | |
| 318-495, gnl|monDom2|scaffold_14 (35740847-35741002) | |
| 318-495, gnl|oryCun1|scaffold_194614 (31724-31601) | |
| 318-495, gnl|panTro1|chr6_random (3836773-3836928) | |
| 318-495, gnl|rheMac2|chr3 (146412857-146413012) | |
| 318-495, gnl|rn3|chr1 (191281623-191281480) | |
| 318-495, gnl|tetNig1|chr2_random (1563619-1563426) | |
| 318-495, gnl|xenTro1|scaffold_4521 (14919-14781) | |
| 828-1032, gnl|bosTau2|chr26 (27800797-27800593) | |
| 828-1032, gnl|canFam2|chr28 (35701629-35701802) | |
| 828-1032, gnl|canFam2|chr28 (35701852-35701635) | |
| 828-1032, gnl|danRer3|chrNA (203850838-203850666) | |
| 828-1032, gnl|danRer3|chrNA (203850616-203850833) | |
| 828-1032, gnl|dasNov1|scaffold_1566 (57201-57028) | |
| 828-1032, gnl|dasNov1|scaffold_1566 (56978-57195) | |
| 828-1032, gnl|echTel1|scaffold_132872 (484-699) | |
| 828-1032, gnl|echTel1|scaffold_159068 (4089-4262) | |
| 828-1032, gnl|fr1|chrUn (25386531-25386704) | |
| 828-1032, gnl|fr1|chrUn (25386754-25386537) | |
| 828-1032, gnl|galGal2|chr6 (30570333-30570506) | |
| 828-1032, gnl|galGal2|chr6 (30570556-30570339) | |
| 828-1032, gnl|hg17|chr10 (124912115-124912288) | |
| 828-1032, gnl|Hg17|chr10 (124912115-124912319) | |
| 828-1032, gnl|hg17|chr7 (108228047-108228263) | |
| 828-1032, gnl|loxAfr1|scaffold_1387 (17338-17125) | |
| 828-1032, gnl|loxAfr1|scaffold_2719 (104204-104051) | |
| 828-1032, gnl|mm7|chr17 (70538514-70538297) | |
| 828-1032, gnl|mm7|chr7 (127925220-127925393) | |
| 828-1032, gnl|Mm7|chr7 (127925220-127925424) | |
| 828-1032, gnl|monDom2|scaffold_14 (35736357-35736184) | |
| 828-1032, gnl|monDom2|scaffold_14 (35736134-35736351) | |
| 828-1032, gnl|oryCun1|scaffold_194614 (36480-36653) | |
| 828-1032, gnl|oryCun1|scaffold_194614 (36703-36486) | |
| 828-1032, gnl|panTro1|chr6_random (3836225-3836441) | |
| 828-1032, gnl|panTro1|chr8 (127218137-127218310) | |
| 828-1032, gnl|rheMac2|chr3 (146412309-146412525) | |
| 828-1032, gnl|rheMac2|chr9 (122752060-122752233) | |
| 828-1032, gnl|rn3|chr1 (191286598-191286771) | |
| 828-1032, gnl|rn3|chr1 (191286821-191286605) | |
| 828-1032, gnl|tetNig1|chr2_random (1564331-1564504) | |
| 828-1032, gnl|tetNig1|chr2_random (1564554-1564337) | |
| 828-1032, gnl|xenTro1|scaffold_97 (1866273-1866446) | |
| 828-1032, gnl|xenTro1|scaffold_97 (1866496-1866279) | |
| 1033-1391, gnl|bosTau2|chr26 (27798370-27798043) | |
| 1033-1391, gnl|Hg17|chr10 (124914538-124914860) | |
| 1033-1391, gnl|Mm7|chr7 (127927582-127927883) |
| Aligned organism(s): 76 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 71-272, gnl|bosTau2|chr26 (27809289-27809088) | |
| 71-272, gnl|canFam2|chr10 (64649580-64649424) | |
| 71-272, gnl|danRer3|chrNA (203851666-203851507) | |
| 71-272, gnl|dasNov1|scaffold_1566 (65142-64976) | |
| 71-272, gnl|echTel1|scaffold_132872 (1392-1241) | |
| 71-272, gnl|fr1|chrUn (25385163-25385329) | |
| 71-272, gnl|galGal2|chr6 (30563455-30563612) | |
| 71-272, gnl|hg17|chr10 (124904414-124904580) | |
| 71-272, gnl|Hg17|chr10 (124904418-124904619) | |
| 71-272, gnl|loxAfr1|scaffold_1387 (16420-16556) | |
| 71-272, gnl|mm7|chr7 (127917418-127917584) | |
| 71-272, gnl|Mm7|chr7 (127917422-127917623) | |
| 71-272, gnl|monDom2|scaffold_14 (35743952-35743786) | |
| 71-272, gnl|oryCun1|scaffold_95260 (1479-1651) | |
| 71-272, gnl|panTro1|chr8 (127210416-127210582) | |
| 71-272, gnl|rheMac2|chr9 (122744341-122744507) | |
| 71-272, gnl|rn3|chr1 (191279091-191279257) | |
| 71-272, gnl|tetNig1|chr2_random (1562987-1563145) | |
| 71-272, gnl|xenTro1|scaffold_97 (1862244-1862401) | |
| 318-495, gnl|bosTau2|chr26 (27805902-27805727) | |
| 318-495, gnl|canFam2|chr28 (35696461-35696306) | |
| 318-495, gnl|danRer3|chrNA (203842540-203842733) | |
| 318-495, gnl|dasNov1|scaffold_1566 (62322-62477) | |
| 318-495, gnl|echTel1|scaffold_132872 (992-1141) | |
| 318-495, gnl|fr1|chrUn (25385805-25385635) | |
| 318-495, gnl|galGal2|chr6 (30565534-30565380) | |
| 318-495, gnl|Hg17|chr10 (124907213-124907388) | |
| 318-495, gnl|hg17|chr7 (108228595-108228750) | |
| 318-495, gnl|loxAfr1|scaffold_1387 (16811-16665) | |
| 318-495, gnl|mm7|chr17 (70537977-70537822) | |
| 318-495, gnl|Mm7|chr7 (127920030-127920205) | |
| 318-495, gnl|monDom2|scaffold_14 (35740847-35741002) | |
| 318-495, gnl|oryCun1|scaffold_194614 (31724-31601) | |
| 318-495, gnl|panTro1|chr6_random (3836773-3836928) | |
| 318-495, gnl|rheMac2|chr3 (146412857-146413012) | |
| 318-495, gnl|rn3|chr1 (191281623-191281480) | |
| 318-495, gnl|tetNig1|chr2_random (1563619-1563426) | |
| 318-495, gnl|xenTro1|scaffold_4521 (14919-14781) | |
| 828-1032, gnl|bosTau2|chr26 (27800797-27800593) | |
| 828-1032, gnl|canFam2|chr28 (35701629-35701802) | |
| 828-1032, gnl|canFam2|chr28 (35701852-35701635) | |
| 828-1032, gnl|danRer3|chrNA (203850838-203850666) | |
| 828-1032, gnl|danRer3|chrNA (203850616-203850833) | |
| 828-1032, gnl|dasNov1|scaffold_1566 (57201-57028) | |
| 828-1032, gnl|dasNov1|scaffold_1566 (56978-57195) | |
| 828-1032, gnl|echTel1|scaffold_132872 (484-699) | |
| 828-1032, gnl|echTel1|scaffold_159068 (4089-4262) | |
| 828-1032, gnl|fr1|chrUn (25386531-25386704) | |
| 828-1032, gnl|fr1|chrUn (25386754-25386537) | |
| 828-1032, gnl|galGal2|chr6 (30570333-30570506) | |
| 828-1032, gnl|galGal2|chr6 (30570556-30570339) | |
| 828-1032, gnl|hg17|chr10 (124912115-124912288) | |
| 828-1032, gnl|Hg17|chr10 (124912115-124912319) | |
| 828-1032, gnl|hg17|chr7 (108228047-108228263) | |
| 828-1032, gnl|loxAfr1|scaffold_1387 (17338-17125) | |
| 828-1032, gnl|loxAfr1|scaffold_2719 (104204-104051) | |
| 828-1032, gnl|mm7|chr17 (70538514-70538297) | |
| 828-1032, gnl|mm7|chr7 (127925220-127925393) | |
| 828-1032, gnl|Mm7|chr7 (127925220-127925424) | |
| 828-1032, gnl|monDom2|scaffold_14 (35736357-35736184) | |
| 828-1032, gnl|monDom2|scaffold_14 (35736134-35736351) | |
| 828-1032, gnl|oryCun1|scaffold_194614 (36480-36653) | |
| 828-1032, gnl|oryCun1|scaffold_194614 (36703-36486) | |
| 828-1032, gnl|panTro1|chr6_random (3836225-3836441) | |
| 828-1032, gnl|panTro1|chr8 (127218137-127218310) | |
| 828-1032, gnl|rheMac2|chr3 (146412309-146412525) | |
| 828-1032, gnl|rheMac2|chr9 (122752060-122752233) | |
| 828-1032, gnl|rn3|chr1 (191286598-191286771) | |
| 828-1032, gnl|rn3|chr1 (191286821-191286605) | |
| 828-1032, gnl|tetNig1|chr2_random (1564331-1564504) | |
| 828-1032, gnl|tetNig1|chr2_random (1564554-1564337) | |
| 828-1032, gnl|xenTro1|scaffold_97 (1866273-1866446) | |
| 828-1032, gnl|xenTro1|scaffold_97 (1866496-1866279) | |
| 1033-1391, gnl|bosTau2|chr26 (27798370-27798043) | |
| 1033-1391, gnl|Hg17|chr10 (124914538-124914860) | |
| 1033-1391, gnl|Mm7|chr7 (127927582-127927883) |
| Expressed library(ies): 34 entry(ies) | More info |
| Expressed library(ies): 34 entry(ies) | Help | Less info |
| elu (0.770713) | |
| cty (0.62448) | |
| tes (0.623441) | |
| nlu (0.383362) | |
| sug (0.381874) | |
| thg (0.380373) | |
| mcp (0.341297) | |
| eye (0.341006) | |
| tbr (0.308356) | |
| lnt (0.284616) | |
| fce (0.271592) | |
| ssp (0.271039) | |
| cov (0.264306) | |
| eru (0.240096) | |
| pgl (0.236967) | |
| ecc (0.23007) | |
| fcc (0.197785) | |
| gul (0.177588) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| cut (0.169924) | |
| nje (0.16592) | |
| nco (0.161734) | |
| eli (0.151814) | |
| bfe (0.149858) | |
| lin (0.145603) | |
| nca (0.136874) | |
| ste (0.135208) | |
| ret (0.128733) | |
| tra (0.123092) | |
| eep (0.122564) | |
| med (0.116252) | |
| eje (0.0988338) | |
| ldo (0.0970026) |
| Expressed library(ies): 34 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.770713) | |
| cty (0.62448) | |
| tes (0.623441) | |
| nlu (0.383362) | |
| sug (0.381874) | |
| thg (0.380373) | |
| mcp (0.341297) | |
| eye (0.341006) | |
| tbr (0.308356) | |
| lnt (0.284616) | |
| fce (0.271592) | |
| ssp (0.271039) | |
| cov (0.264306) | |
| eru (0.240096) | |
| pgl (0.236967) | |
| ecc (0.23007) | |
| fcc (0.197785) | |
| gul (0.177588) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| cut (0.169924) | |
| nje (0.16592) | |
| nco (0.161734) | |
| eli (0.151814) | |
| bfe (0.149858) | |
| lin (0.145603) | |
| nca (0.136874) | |
| ste (0.135208) | |
| ret (0.128733) | |
| tra (0.123092) | |
| eep (0.122564) | |
| med (0.116252) | |
| eje (0.0988338) | |
| ldo (0.0970026) |