Non-Coding RNA Search

Ss1.1-Thy1-THY010031B01.5

Sequence:


               
               TGTTTACGTGGAGACGAAGATGGCGGCTGCGGCGGTGACGACGCTGCTCGTGCGGCCGAG
TACTGTCAGCCAGTGAGCGAGGAGACTGGTTCCACTCCGGGCGGGGAGGAGCGCCGGCCC
GGCCCCGCGAGCGGGGCTGTGGAGCTTGCGGTCCCACCTCCGTCTGAACCGACCTTTCCT
TTCTACTCTTGACCCCTTGCGTGTCTTCCCCCAGCCTTCCCCGCAGAAGCTATGGAGGAC
GAAGAGAGGCAGAAGAAGCTGGAGGCCGGCAAAGCGAGGCTTGCCCAGTTTCGACAAAGG
AAAGCTCAGTCTGATGGGCAGAATCCTAAGAAGCAGAAGAAAAAGAAGAAAACTTCAAGC
AGTAAACATGACATGTCAGCATACCATGCTGAGAATACTGAGCAATCACAGAGTGATGAG
ATGTGTGTAAATAGTTCTCAGAGATTAGGATCAGCCTTAACTCCTGAATCCACAATAATA
AGAACTTTACACAGTGGAGGAGTAATTAAACATGACCAGGTTTTCTCTGTTGAACCAGAA
AGTGAAATTTCAACCACAGCAGATGATTATAGTTCAGAGGTAAATGGTTGCAGTTTTGTG
GTGAGAACAGGAAAGCCTACAAATTTATTAAGGGAAGAAGAATTTGGTATTGATGATTCT
TATTCTGAACATGGAGCACAGTACAGTCAGCCCCACCTAGAGATGCTGGAAAATGAATTG
GCTGGGAAACAACATGAGATTGAAGAGCTAAACAGAGAACTAGAAGAAATGAGAGCTACT
TACGGGACAGAAGGACTGCAGCAGTTGCAAGAATTTGAAGCTGCCATTAAACAAAGAGAT
GGCATCATAACCCAGCTCACTGCTAATTTACAACAAGCAAGAAGAGAAAAGGATGAGACA
ATGAGAGAATTTTTAGAGTTGACAGAACAAAGTCAAAAATTACAGATTCAATTCCAGCAT
TTACAGGCTAGTGAAACTCTGAGAAATAGCACTCATAGTAGCACAGCTGCAGATTTACTA
CAAGCCAAACAGCAGATCCTCACTCATCAGCAACAGCTGGAAGAACAAGACCATCTATTA
GAAGATTATCACAAAAAGAAAGAAGACTTCAAAATGCAAATTAGTTTCTTGCAAGAGAAA
ATTAAAGCATATGAAATGGAACAGGATAAAAAAGTAGAAAATTCATGTAAAGAAATACAG
GAAAAGGAGGCCATCATTGAAGAATTAAATACAAAACTAGAAGAAATGAGAGCTACTTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTTACGTGGAGACGAAGATGGCGGCTGCGGCGGTGACGACGCTGCTCGTGCGGCCGAG
TACTGTCAGCCAGTGAGCGAGGAGACTGGTTCCACTCCGGGCGGGGAGGAGCGCCGGCCC
GGCCCCGCGAGCGGGGCTGTGGAGCTTGCGGTCCCACCTCCGTCTGAACCGACCTTTCCT
TTCTACTCTTGACCCCTTGCGTGTCTTCCCCCAGCCTTCCCCGCAGAAGCTATGGAGGAC
GAAGAGAGGCAGAAGAAGCTGGAGGCCGGCAAAGCGAGGCTTGCCCAGTTTCGACAAAGG
AAAGCTCAGTCTGATGGGCAGAATCCTAAGAAGCAGAAGAAAAAGAAGAAAACTTCAAGC
AGTAAACATGACATGTCAGCATACCATGCTGAGAATACTGAGCAATCACAGAGTGATGAG
ATGTGTGTAAATAGTTCTCAGAGATTAGGATCAGCCTTAACTCCTGAATCCACAATAATA
AGAACTTTACACAGTGGAGGAGTAATTAAACATGACCAGGTTTTCTCTGTTGAACCAGAA
AGTGAAATTTCAACCACAGCAGATGATTATAGTTCAGAGGTAAATGGTTGCAGTTTTGTG
GTGAGAACAGGAAAGCCTACAAATTTATTAAGGGAAGAAGAATTTGGTATTGATGATTCT
TATTCTGAACATGGAGCACAGTACAGTCAGCCCCACCTAGAGATGCTGGAAAATGAATTG
GCTGGGAAACAACATGAGATTGAAGAGCTAAACAGAGAACTAGAAGAAATGAGAGCTACT
TACGGGACAGAAGGACTGCAGCAGTTGCAAGAATTTGAAGCTGCCATTAAACAAAGAGAT
GGCATCATAACCCAGCTCACTGCTAATTTACAACAAGCAAGAAGAGAAAAGGATGAGACA
ATGAGAGAATTTTTAGAGTTGACAGAACAAAGTCAAAAATTACAGATTCAATTCCAGCAT
TTACAGGCTAGTGAAACTCTGAGAAATAGCACTCATAGTAGCACAGCTGCAGATTTACTA
CAAGCCAAACAGCAGATCCTCACTCATCAGCAACAGCTGGAAGAACAAGACCATCTATTA
GAAGATTATCACAAAAAGAAAGAAGACTTCAAAATGCAAATTAGTTTCTTGCAAGAGAAA
ATTAAAGCATATGAAATGGAACAGGATAAAAAAGTAGAAAATTCATGTAAAGAAATACAG
GAAAAGGAGGCCATCATTGAAGAATTAAATACAAAACTAGAAGAAATGAGAGCTACTTAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6PJH3_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6PJH3_HUMAN

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               633-807, gnl|bosTau2|chr4 (1633641-1633467)
               

               
               633-807, gnl|Hg17|chr7 (91266849-91267023)
               

               
               633-807, gnl|Mm7|chr5 (3960797-3960971)
               


               
               961-1159, gnl|bosTau2|chr4 (1631576-1631378)
               

               
               961-1159, gnl|Hg17|chr7 (91269568-91269766)
               

               
               961-1159, gnl|Mm7|chr5 (3963630-3963807)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               633-807, gnl|bosTau2|chr4 (1633641-1633467)
               

               
               633-807, gnl|Hg17|chr7 (91266849-91267023)
               

               
               633-807, gnl|Mm7|chr5 (3960797-3960971)
               


               
               961-1159, gnl|bosTau2|chr4 (1631576-1631378)
               

               
               961-1159, gnl|Hg17|chr7 (91269568-91269766)
               

               
               961-1159, gnl|Mm7|chr5 (3963630-3963807)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               sug (0.254582)
               

               
               pan (0.23596)
               

               
               hea (0.204499)
               

               
               tbr (0.154178)
               

               
               ski (0.146735)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)

Expressed library(ies): 10 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sug (0.254582)
               

               
               pan (0.23596)
               

               
               hea (0.204499)
               

               
               tbr (0.154178)
               

               
               ski (0.146735)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)

	633-807, gnl\|bosTau2\|chr4 (1633641-1633467)
	633-807, gnl\|Hg17\|chr7 (91266849-91267023)
	633-807, gnl\|Mm7\|chr5 (3960797-3960971)

	961-1159, gnl\|bosTau2\|chr4 (1631576-1631378)
	961-1159, gnl\|Hg17\|chr7 (91269568-91269766)
	961-1159, gnl\|Mm7\|chr5 (3963630-3963807)

	sug (0.254582)
	pan (0.23596)
	hea (0.204499)
	tbr (0.154178)
	ski (0.146735)
	ret (0.128733)
	thg (0.126791)
	bla (0.124347)
	pgl (0.118483)
	cty (0.10408)