Non-Coding RNA Search

Ss1.1-Thy1-THY010031B08.5

Sequence:


               
               CGCCTCTTTGTTTTAAACTCCGGACGGGTTTTTTTCTCCTGCTCTTGGGGGGGACCCAGA
GGGAGCGGCGCCCCCTCCCCCTCCCGGCGCGGCCCCCGCGTGCGCCCCGCTCGCCCGCAG
CCGAGACGGCAGGTAAAGGAGCAGATCCGTTTCGCTGAGCAGCCAAAGCCGCTGGTCCGG
TGGGGCTGCTCCGTGGGGGCAGCACGTGTGGGTAACGCCACCGTCCCGTGTGTCTCTGCA
GCTTCAGAATGTAGCAGGGTCCCGGCTGCGTGTGCAGAAAATGGAAAGACAGCGAGAGAC
AGGAGGAAGGTGCAGACGTGACGAGCCAGAGTGCGGGGGGAGCAGCGGACGAGGACCCGA
ATCCCTCCCGTAACCCGGAGCATCCGATGCGGAGGCAGCGGAGGGGACAGACGGCATCTT
GAGGAGAAGCCAAAGATGTTGACCAGAAAGATTAAACTCTGGGACATAAACGCCCACATC
ACCTGCCGCCTGTGCAGTGGGTATCTCATCGATGCCACCACGGTGACGGAGTGTCTGCAC
ACATTCTGCCGGAGCTGCCTGGTGAAGTACCTGGAGGAGAACAACACGTGTCCCACCTGC
AGGATTGTCATCCACCAGAGCCACCCTCTGCAGTACATCGGTCATGACAGGACCATGCAG
GATATTGTTTACAAACTGGTCCCAGGCCTCCAGGAAGCGGAGATGAGGAAACAGAGGGAA
TTCTACCACAAGTTGGGCCTGGAAGTGCCTGGAGACGTCAAGGGAGAGACCTGTTCTGCA
AAACAGCACTTGGATTCCCATCGGAACGGAGAAACCAAAGCGGAAGACAGTTCGAACAAA
GAAGCAGCCGAGGAGAAGCAGGAGGAGGACGGCGACTATCACCGCAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCCTCTTTGTTTTAAACTCCGGACGGGTTTTTTTCTCCTGCTCTTGGGGGGGACCCAGA
GGGAGCGGCGCCCCCTCCCCCTCCCGGCGCGGCCCCCGCGTGCGCCCCGCTCGCCCGCAG
CCGAGACGGCAGGTAAAGGAGCAGATCCGTTTCGCTGAGCAGCCAAAGCCGCTGGTCCGG
TGGGGCTGCTCCGTGGGGGCAGCACGTGTGGGTAACGCCACCGTCCCGTGTGTCTCTGCA
GCTTCAGAATGTAGCAGGGTCCCGGCTGCGTGTGCAGAAAATGGAAAGACAGCGAGAGAC
AGGAGGAAGGTGCAGACGTGACGAGCCAGAGTGCGGGGGGAGCAGCGGACGAGGACCCGA
ATCCCTCCCGTAACCCGGAGCATCCGATGCGGAGGCAGCGGAGGGGACAGACGGCATCTT
GAGGAGAAGCCAAAGATGTTGACCAGAAAGATTAAACTCTGGGACATAAACGCCCACATC
ACCTGCCGCCTGTGCAGTGGGTATCTCATCGATGCCACCACGGTGACGGAGTGTCTGCAC
ACATTCTGCCGGAGCTGCCTGGTGAAGTACCTGGAGGAGAACAACACGTGTCCCACCTGC
AGGATTGTCATCCACCAGAGCCACCCTCTGCAGTACATCGGTCATGACAGGACCATGCAG
GATATTGTTTACAAACTGGTCCCAGGCCTCCAGGAAGCGGAGATGAGGAAACAGAGGGAA
TTCTACCACAAGTTGGGCCTGGAAGTGCCTGGAGACGTCAAGGGAGAGACCTGTTCTGCA
AAACAGCACTTGGATTCCCATCGGAACGGAGAAACCAAAGCGGAAGACAGTTCGAACAAA
GAAGCAGCCGAGGAGAAGCAGGAGGAGGACGGCGACTATCACCGCAGT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|26329299|dbj|BAC28388.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26329299|dbj|BAC28388.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-141, gnl|bosTau2|chr6 (63885642-63885782)
               

               
               1-141, gnl|Hg17|chr4 (689626-689768)
               

               
               1-141, gnl|Mm7|chr5 (107642253-107642390)
               


               
               425-544, gnl|bosTau2|chr6 (63902648-63902767)
               

               
               425-544, gnl|Hg17|chr4 (717459-717578)
               

               
               425-544, gnl|Mm7|chr5 (107654717-107654836)
               


               
               696-812, gnl|bosTau2|chr6 (63908062-63908178)
               

               
               696-812, gnl|Hg17|chr4 (727260-727376)
               

               
               696-812, gnl|Mm7|chr5 (107667068-107667181)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-141, gnl|bosTau2|chr6 (63885642-63885782)
               

               
               1-141, gnl|Hg17|chr4 (689626-689768)
               

               
               1-141, gnl|Mm7|chr5 (107642253-107642390)
               


               
               425-544, gnl|bosTau2|chr6 (63902648-63902767)
               

               
               425-544, gnl|Hg17|chr4 (717459-717578)
               

               
               425-544, gnl|Mm7|chr5 (107654717-107654836)
               


               
               696-812, gnl|bosTau2|chr6 (63908062-63908178)
               

               
               696-812, gnl|Hg17|chr4 (727260-727376)
               

               
               696-812, gnl|Mm7|chr5 (107667068-107667181)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nco (0.323468)
               

               
               spl (0.143184)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.323468)
               

               
               spl (0.143184)
               

               
               cty (0.10408)

	1-141, gnl\|bosTau2\|chr6 (63885642-63885782)
	1-141, gnl\|Hg17\|chr4 (689626-689768)
	1-141, gnl\|Mm7\|chr5 (107642253-107642390)

	425-544, gnl\|bosTau2\|chr6 (63902648-63902767)
	425-544, gnl\|Hg17\|chr4 (717459-717578)
	425-544, gnl\|Mm7\|chr5 (107654717-107654836)

	696-812, gnl\|bosTau2\|chr6 (63908062-63908178)
	696-812, gnl\|Hg17\|chr4 (727260-727376)
	696-812, gnl\|Mm7\|chr5 (107667068-107667181)