Non-Coding RNA Search

Ss1.1-Thy1-THY010031D04.5

Sequence:


               
               AAGTTATTCCGCGGGGCGGAAAAGGTGTGTCTGCATGTGTTCGGACTATTTCCAGCCCCC
TTTCCTCGCAGGGCCCCATGAGTAAGCTGTGGCGGCGCGGGAGCACCTCTGGGGCTATGG
AGGCCCCTGAGCCGGGGGAAGCCCTGGAGTTGAGTCTGGCAGGTGCCCACGGCCACGGAG
TGCACAAGAAAAAGCACAAGAAGCACAAGAAGAAGCACAAGAAGAAACACTACCAGGAAG
AGGAGGCTGGGCCCACGCAGCCGTCTCCTGCTAAGCCCCAGCTCAAACTCAAAATCAAGC
TGGGCGGGCAGGTCCTGGGCACCAAGAGTGTTCCTACCTTCACTGTGATCCCTGAGGGCC
CTCGCTCACCTTCTCCCCTTATGGTTGTGGACAACGAAGAGGAACCTATGGAAGGAGTTC
CCCTTGAGCAGTACCGTGCCTGGCTGGATGAAGACAGTAATCTGTCCCCCTCCCCACTTC
GGGACCTGTCCGGGAGCCTAGGGGGTCAGGAGGAAGAGGAGGAACAGAGGTGGCTGGATG
CTTTGGAGAAGGGGGAGCTTGATGACAATGGAGATCTCAAGAAGGAAATCAATGAACGGC
TGCTCACTGCCCGACAGAGAGCTCTGCTGCAGAAGGCTCGGAGCCAGCCTTCCCCAATGC
TGTCACTACCTGTGGCTGGGGGCTGCCCGGCCCCAGCTCTCACAGAGGAGATGCTGCTGA
AGCGTGAGGAGCGGGCGCGGAAGAGGAGGCTGCAGGCGGCTCGGCGGGCAGAGGAGCACA
AGAACCAGACTATTGAGCGCCTCACCAAGACTGCGGCGCCCAGCGGGCGAGGAGGCCGAG
GGGCTGCGCGGGGCGAGCGGCGGGGAGGGCGGACTGCAGCCCCGGCCCCCATGGTGCGCT
ACAGTAGCGGGGCACAGGGTTCCACCCTTTCCTTCCCACCTGGCGTTCCGGCCCCCGCAC
CTGTGTCTCAGCGGCCATCCCCATCTGGCCCTCCTCCTCGATGCTCTGTCCCCGGTTGCC
CCCATCCGCGACGCTACGCCTGCTCCCGCACCGGCCAAGCACTCTGCAGCCTTCAGTGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGTTATTCCGCGGGGCGGAAAAGGTGTGTCTGCATGTGTTCGGACTATTTCCAGCCCCC
TTTCCTCGCAGGGCCCCATGAGTAAGCTGTGGCGGCGCGGGAGCACCTCTGGGGCTATGG
AGGCCCCTGAGCCGGGGGAAGCCCTGGAGTTGAGTCTGGCAGGTGCCCACGGCCACGGAG
TGCACAAGAAAAAGCACAAGAAGCACAAGAAGAAGCACAAGAAGAAACACTACCAGGAAG
AGGAGGCTGGGCCCACGCAGCCGTCTCCTGCTAAGCCCCAGCTCAAACTCAAAATCAAGC
TGGGCGGGCAGGTCCTGGGCACCAAGAGTGTTCCTACCTTCACTGTGATCCCTGAGGGCC
CTCGCTCACCTTCTCCCCTTATGGTTGTGGACAACGAAGAGGAACCTATGGAAGGAGTTC
CCCTTGAGCAGTACCGTGCCTGGCTGGATGAAGACAGTAATCTGTCCCCCTCCCCACTTC
GGGACCTGTCCGGGAGCCTAGGGGGTCAGGAGGAAGAGGAGGAACAGAGGTGGCTGGATG
CTTTGGAGAAGGGGGAGCTTGATGACAATGGAGATCTCAAGAAGGAAATCAATGAACGGC
TGCTCACTGCCCGACAGAGAGCTCTGCTGCAGAAGGCTCGGAGCCAGCCTTCCCCAATGC
TGTCACTACCTGTGGCTGGGGGCTGCCCGGCCCCAGCTCTCACAGAGGAGATGCTGCTGA
AGCGTGAGGAGCGGGCGCGGAAGAGGAGGCTGCAGGCGGCTCGGCGGGCAGAGGAGCACA
AGAACCAGACTATTGAGCGCCTCACCAAGACTGCGGCGCCCAGCGGGCGAGGAGGCCGAG
GGGCTGCGCGGGGCGAGCGGCGGGGAGGGCGGACTGCAGCCCCGGCCCCCATGGTGCGCT
ACAGTAGCGGGGCACAGGGTTCCACCCTTTCCTTCCCACCTGGCGTTCCGGCCCCCGCAC
CTGTGTCTCAGCGGCCATCCCCATCTGGCCCTCCTCCTCGATGCTCTGTCCCCGGTTGCC
CCCATCCGCGACGCTACGCCTGCTCCCGCACCGGCCAAGCACTCTGCAGCCTTCAGTGCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q9CY38_MOUSE

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q9CY38_MOUSE

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               327-451, gnl|bosTau2|chr11 (7823184-7823060)
               

               
               327-451, gnl|Hg17|chr2 (74594598-74594722)
               

               
               327-451, gnl|Mm7|chr6 (83149861-83149737)
               


               
               616-1080, gnl|bosTau2|chr11 (7821781-7821317)
               

               
               616-1080, gnl|Hg17|chr2 (74596114-74596578)
               

               
               616-1080, gnl|Mm7|chr6 (83147800-83147330)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               327-451, gnl|bosTau2|chr11 (7823184-7823060)
               

               
               327-451, gnl|Hg17|chr2 (74594598-74594722)
               

               
               327-451, gnl|Mm7|chr6 (83149861-83149737)
               


               
               616-1080, gnl|bosTau2|chr11 (7821781-7821317)
               

               
               616-1080, gnl|Hg17|chr2 (74596114-74596578)
               

               
               616-1080, gnl|Mm7|chr6 (83147800-83147330)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

Help | Less info


               
               cov (0.396458)
               

               
               nep (0.36785)
               

               
               cly (0.241284)
               

               
               ece (0.229305)
               

               
               nmm (0.132802)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               med (0.116252)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.396458)
               

               
               nep (0.36785)
               

               
               cly (0.241284)
               

               
               ece (0.229305)
               

               
               nmm (0.132802)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               med (0.116252)

	327-451, gnl\|bosTau2\|chr11 (7823184-7823060)
	327-451, gnl\|Hg17\|chr2 (74594598-74594722)
	327-451, gnl\|Mm7\|chr6 (83149861-83149737)

	616-1080, gnl\|bosTau2\|chr11 (7821781-7821317)
	616-1080, gnl\|Hg17\|chr2 (74596114-74596578)
	616-1080, gnl\|Mm7\|chr6 (83147800-83147330)

	cov (0.396458)
	nep (0.36785)
	cly (0.241284)
	ece (0.229305)
	nmm (0.132802)
	eru (0.120048)
	clu (0.119646)
	med (0.116252)