Ss1.1-Thy1-THY010031D06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGCGCTACGGCAGTTGCTGCCCGGCATCTTTTGAACTCGAGTGACGAGGCCTGCGGGCA GGAGCAGCAGGCGCCTAGGCCCCAGTCGTGCTGCCTCGTTACGATGACCAGCGTGGTTAA GACAGTGTACACCCTGCAGCCCACTTCTGTGCTGAGCAGCTGTCTGGCCGCAGATGCACA AACTCGAGCCACTTCTAAGAGCCTTTTACCTGTCAAGTGCAAAGAAGTTGATGTTTCCAA ACCTCGTTCAGGAGGTTCAGAGAATGATGGTACAAAAATCATCAAACCAAGAAGAGAGAA TGGGCAGGTGAAAGCTTTAGACACTGCCACTAGGAGGAACATCAGAAAGGGCTACAAGCC ATTGAGTGAACGGAAATCAGAGGAAGAGCTCAAGGATAAGAACCAGCTCCTAGAGGCTGT CAACAAGCAGTTGCACCAGAAGTTGACTGAAACTCAGGGAGAGCTGAAGGACCTGACTCA AAAAGTGGAGCTGCTGGAGAAGTTTCAGGACAACTGTTTGGCAATTTTGGAGAGCAAGGG CCTCAACACAGGCAGTGAGACCCTGGCGTCACAGCAAGACTCTACCATGGATCACATGGA CTCTATGTTGCTGTTAGAAACTCTGCAAGATGAGCTGAAGCTTTTTAATGAAACCGCCAC AAAGCAGATGGAGGAGTTGCAGGCCTTAAAGATAAAGTTGAAGATGAAGGAAGAAGAGAG GGCCCAGTTCCTAGAACAACAAACTTTATTCAACAGTCAAATAAATGATTTTACTACAGC CCTTGAGGAAATGGAGCAGCTCTTAGAAATGTGATGAAAAAGCAAGTGGCCATGTGGCTC CCTCTTGGGGACAGACTCTCAGAGGAAGCCACTTAGGACATCTGCTTCTTGGCCGTGATC TTCTAGGACTCACCATCCCCAGAGTGAAAACAGTTTCTGCAATAGGATCAAGAACAGTCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGCGCTACGGCAGTTGCTGCCCGGCATCTTTTGAACTCGAGTGACGAGGCCTGCGGGCA GGAGCAGCAGGCGCCTAGGCCCCAGTCGTGCTGCCTCGTTACGATGACCAGCGTGGTTAA GACAGTGTACACCCTGCAGCCCACTTCTGTGCTGAGCAGCTGTCTGGCCGCAGATGCACA AACTCGAGCCACTTCTAAGAGCCTTTTACCTGTCAAGTGCAAAGAAGTTGATGTTTCCAA ACCTCGTTCAGGAGGTTCAGAGAATGATGGTACAAAAATCATCAAACCAAGAAGAGAGAA TGGGCAGGTGAAAGCTTTAGACACTGCCACTAGGAGGAACATCAGAAAGGGCTACAAGCC ATTGAGTGAACGGAAATCAGAGGAAGAGCTCAAGGATAAGAACCAGCTCCTAGAGGCTGT CAACAAGCAGTTGCACCAGAAGTTGACTGAAACTCAGGGAGAGCTGAAGGACCTGACTCA AAAAGTGGAGCTGCTGGAGAAGTTTCAGGACAACTGTTTGGCAATTTTGGAGAGCAAGGG CCTCAACACAGGCAGTGAGACCCTGGCGTCACAGCAAGACTCTACCATGGATCACATGGA CTCTATGTTGCTGTTAGAAACTCTGCAAGATGAGCTGAAGCTTTTTAATGAAACCGCCAC AAAGCAGATGGAGGAGTTGCAGGCCTTAAAGATAAAGTTGAAGATGAAGGAAGAAGAGAG GGCCCAGTTCCTAGAACAACAAACTTTATTCAACAGTCAAATAAATGATTTTACTACAGC CCTTGAGGAAATGGAGCAGCTCTTAGAAATGTGATGAAAAAGCAAGTGGCCATGTGGCTC CCTCTTGGGGACAGACTCTCAGAGGAAGCCACTTAGGACATCTGCTTCTTGGCCGTGATC TTCTAGGACTCACCATCCCCAGAGTGAAAACAGTTTCTGCAATAGGATCAAGAACAGTCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 797-916, + strand, RNAz p=0.515396 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 797-916, + strand, RNAz p=0.515396 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_033286, + |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 170-304, gnl|bosTau2|chr10 (23774635-23774769) | |
| 170-304, gnl|canFam2|chr30 (10555629-10555733) | |
| 170-304, gnl|dasNov1|scaffold_116458 (735-839) | |
| 170-304, gnl|echTel1|scaffold_200716 (3490-3579) | |
| 170-304, gnl|hg17|chr15 (38465851-38465958) | |
| 170-304, gnl|Hg17|chr15 (38465851-38465988) | |
| 170-304, gnl|loxAfr1|scaffold_10483 (54481-54374) | |
| 170-304, gnl|mm7|chr2 (118558709-118558810) | |
| 170-304, gnl|Mm7|chr2 (118558709-118558840) | |
| 170-304, gnl|monDom2|scaffold_12 (1976962-1976855) | |
| 170-304, gnl|oryCun1|scaffold_37703 (440-547) | |
| 170-304, gnl|panTro1|chr16 (38349869-38349976) | |
| 170-304, gnl|rheMac2|chr7 (18718930-18719037) | |
| 170-304, gnl|rn3|chr3 (105222631-105222732) | |
| 351-458, gnl|bosTau2|chr10 (23777114-23777221) | |
| 351-458, gnl|canFam2|chr30 (10558011-10558135) | |
| 351-458, gnl|dasNov1|scaffold_116458 (2300-2421) | |
| 351-458, gnl|echTel1|scaffold_200716 (5081-5205) | |
| 351-458, gnl|galGal2|chr5 (2677305-2677178) | |
| 351-458, gnl|hg17|chr15 (38468986-38469110) | |
| 351-458, gnl|Hg17|chr15 (38468998-38469105) | |
| 351-458, gnl|loxAfr1|scaffold_10483 (52774-52650) | |
| 351-458, gnl|mm7|chr2 (118564256-118564380) | |
| 351-458, gnl|Mm7|chr2 (118564268-118564375) | |
| 351-458, gnl|monDom2|scaffold_12 (1975883-1975759) | |
| 351-458, gnl|oryCun1|scaffold_37703 (626-714) | |
| 351-458, gnl|panTro1|chr16 (38353021-38353145) | |
| 351-458, gnl|rheMac2|chr7 (18721882-18722006) | |
| 351-458, gnl|rn3|chr3 (105227306-105227430) | |
| 678-958, gnl|bosTau2|chr10 (23780055-23780333) | |
| 678-958, gnl|Hg17|chr15 (38472957-38473230) | |
| 678-958, gnl|Mm7|chr2 (118574846-118575107) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 170-304, gnl|bosTau2|chr10 (23774635-23774769) | |
| 170-304, gnl|canFam2|chr30 (10555629-10555733) | |
| 170-304, gnl|dasNov1|scaffold_116458 (735-839) | |
| 170-304, gnl|echTel1|scaffold_200716 (3490-3579) | |
| 170-304, gnl|hg17|chr15 (38465851-38465958) | |
| 170-304, gnl|Hg17|chr15 (38465851-38465988) | |
| 170-304, gnl|loxAfr1|scaffold_10483 (54481-54374) | |
| 170-304, gnl|mm7|chr2 (118558709-118558810) | |
| 170-304, gnl|Mm7|chr2 (118558709-118558840) | |
| 170-304, gnl|monDom2|scaffold_12 (1976962-1976855) | |
| 170-304, gnl|oryCun1|scaffold_37703 (440-547) | |
| 170-304, gnl|panTro1|chr16 (38349869-38349976) | |
| 170-304, gnl|rheMac2|chr7 (18718930-18719037) | |
| 170-304, gnl|rn3|chr3 (105222631-105222732) | |
| 351-458, gnl|bosTau2|chr10 (23777114-23777221) | |
| 351-458, gnl|canFam2|chr30 (10558011-10558135) | |
| 351-458, gnl|dasNov1|scaffold_116458 (2300-2421) | |
| 351-458, gnl|echTel1|scaffold_200716 (5081-5205) | |
| 351-458, gnl|galGal2|chr5 (2677305-2677178) | |
| 351-458, gnl|hg17|chr15 (38468986-38469110) | |
| 351-458, gnl|Hg17|chr15 (38468998-38469105) | |
| 351-458, gnl|loxAfr1|scaffold_10483 (52774-52650) | |
| 351-458, gnl|mm7|chr2 (118564256-118564380) | |
| 351-458, gnl|Mm7|chr2 (118564268-118564375) | |
| 351-458, gnl|monDom2|scaffold_12 (1975883-1975759) | |
| 351-458, gnl|oryCun1|scaffold_37703 (626-714) | |
| 351-458, gnl|panTro1|chr16 (38353021-38353145) | |
| 351-458, gnl|rheMac2|chr7 (18721882-18722006) | |
| 351-458, gnl|rn3|chr3 (105227306-105227430) | |
| 678-958, gnl|bosTau2|chr10 (23780055-23780333) | |
| 678-958, gnl|Hg17|chr15 (38472957-38473230) | |
| 678-958, gnl|Mm7|chr2 (118574846-118575107) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| tes (0.415628) | |
| cte (0.29274) | |
| jej (0.197844) | |
| fty (0.17584) | |
| eli (0.151814) | |
| spl (0.143184) | |
| csk (0.140746) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| med (0.116252) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.415628) | |
| cte (0.29274) | |
| jej (0.197844) | |
| fty (0.17584) | |
| eli (0.151814) | |
| spl (0.143184) | |
| csk (0.140746) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| med (0.116252) |