Ss1.1-Thy1-THY010031F02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGAAGGGGCCGGCCTTTGAGCGACAGCGACGCAAGATGGCAGCCACCACGGGCTCGGGA GTAAAAGTCCCTCGCAATTTCCGACTGTTGGAAGAACTCGAAGAAGGCCAGAAAGGAGTA GGAGATGGCACAGTTAGCTGGGGTCTAGAAGATGACGAAGACATGACACTTACAAGATGG ACAGGGATGATAATTGGGCCTCCAAGAACAATTTATGAAAACCGAATATACAGCCTTAAA ATAGAATGTGGACCTAAATACCCAGAAGCACCCCCCTTTGTAAGATTTGTAACAAAAATT AATATGAATGGAGTTAATAGTTCTAATGGAGTGGTGGACCCAAGAGCCATATCAGTGCTA GCAAAATGGCAGAACTCATATAGTATCAAAGTTGTTCTGCAAGAGCTTCGACGCCTAATG ATGTCTAAAGAAAATATGAAACTCCCTCAGCCGCCTGAAGGACAGTGTTACAGCAATTAA TCAAAAAGAAAAACCACAGGCCCTCCCCTACCCCCCATTCGATTTAAGCAGTCTTCATTT TCCACAGTAGTAAATTTTCTAGATACATCTTGTAGACCTCAAAGTACTGGAAAGGAAGCT TCCATTCAAAGGCAATTTATCTTAAGATACTGTAAATGATACTAATTTTTTTGTCCATTT GAAATATATAAGTTGTGCTATAACAAATCATCCTGTCAAGTGTAACCACTGTCCACATAG TTGAACTTCTGGGATCAAGAAAGTATATTTAAATTGATTCCCATCATAACCGGTGGGGCA CATCTAACTCAACTGTGAAAAGACACATCACACAATCACCTTGCTGCTGATTACATGGCC TAGGGTCTCTGCCTTTTCCCCTTCCCCTCCCCCTGCTTCCCTCCCTCCCTGCAACAGCCC TCCAGCTCGGGGTGGCTTGTTAGAGTAGATGTGAAGGTTTCAGGTCACAGCCTGTTGGAC TACTGCTGGGTATGGGGGGGTGCTTTGTCTGCACCCCTTGTTTCTTTTTTTAAGTCTTAA ATGATGCCTCCCTTCCAAGCCATCATCCTTTCCCCAACTCTCCACTCCCACCCTTGGCCG AAGCATAGATTGTAACCCCCTCTGCTCCCCTCTGAAATTGGCCTTTGGTGAGGAATTCAG GGCTTTCCCCATATCTTCTCCCCCTACCTTAATCGAGGGGTGCTGCTTTTTCCTTCCTCC TCCTCAAATCCCTTTTTGCACCATCACCACCCAACACTTTCCATGGCACTTCCTTGCTTT GGCCAGAAGCCATCAGGTAAGGTTGGAAAGAGTCTCTGACCGCCCTCATTTAGTTTTGGA ACCATGTTTATTTACTCTCCACCAGCCTGGGAAATGAATATTGGGTTCTCAGCCCTGCCA CCCTCTGCTGTCATCATCAGCTGATGCGTTTTTAGCTCAGGTTTTGATAAGATGAAAGAA CAGTCACCAGGGCTACTCAGACCTGCCAGCTCTCGAAGTCCTTGGTGGTTAAACTTGGAG AAAGGCCACGGAAGACACTTGTAAGCACACACAATCCCTCTGAATGAATTGTTTTCTTTT CCTGTAATTGCTTTTGCTTTTAAAAATTGAAGAAGTTTTGAAGGTATCTCATTTGGTCAT CCTTGCAATCCAATTTGGGTCTAGTTTGGAATCTGACAACTGGAACAAAAAGAATCTTGA ATTCGGTGCATACTTTGGTTTTGGTGCTGCTGCTTCTCACGGTCCTCAGCAGGGATTAAG AAAGAACTCGGTGTGCACGGCAGATCCCCGAAATTGGCGGGCTTGACTTTCCGGCAAATT GCTGCGTTTTTCCACTTTTCTGTTCAGGACCACTAAATGCTGAGGTGTGGATGCATACCG AAATAAAAGCAATTCATTGTGTTCTAAGGGTTTTTTTTTTTTTAATTTAGCGTTTGTATA AAACCACCTTTTGAAGCAGCAACTATCAAGTCTGAAAAGCAATTGATGTTTCCATTAATC TTTTTCTGGGGAAAACCTTAGTTCTAAGGATTTAACATCCTGTAAGTAAAGTTTAACATA ACAGTATTCCATAAGCAGCCTTTTTATTGTCAGACCATTGCCTGATTTTAATATAATAAA AAGAAGTGTGCG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGAAGGGGCCGGCCTTTGAGCGACAGCGACGCAAGATGGCAGCCACCACGGGCTCGGGA GTAAAAGTCCCTCGCAATTTCCGACTGTTGGAAGAACTCGAAGAAGGCCAGAAAGGAGTA GGAGATGGCACAGTTAGCTGGGGTCTAGAAGATGACGAAGACATGACACTTACAAGATGG ACAGGGATGATAATTGGGCCTCCAAGAACAATTTATGAAAACCGAATATACAGCCTTAAA ATAGAATGTGGACCTAAATACCCAGAAGCACCCCCCTTTGTAAGATTTGTAACAAAAATT AATATGAATGGAGTTAATAGTTCTAATGGAGTGGTGGACCCAAGAGCCATATCAGTGCTA GCAAAATGGCAGAACTCATATAGTATCAAAGTTGTTCTGCAAGAGCTTCGACGCCTAATG ATGTCTAAAGAAAATATGAAACTCCCTCAGCCGCCTGAAGGACAGTGTTACAGCAATTAA TCAAAAAGAAAAACCACAGGCCCTCCCCTACCCCCCATTCGATTTAAGCAGTCTTCATTT TCCACAGTAGTAAATTTTCTAGATACATCTTGTAGACCTCAAAGTACTGGAAAGGAAGCT TCCATTCAAAGGCAATTTATCTTAAGATACTGTAAATGATACTAATTTTTTTGTCCATTT GAAATATATAAGTTGTGCTATAACAAATCATCCTGTCAAGTGTAACCACTGTCCACATAG TTGAACTTCTGGGATCAAGAAAGTATATTTAAATTGATTCCCATCATAACCGGTGGGGCA CATCTAACTCAACTGTGAAAAGACACATCACACAATCACCTTGCTGCTGATTACATGGCC TAGGGTCTCTGCCTTTTCCCCTTCCCCTCCCCCTGCTTCCCTCCCTCCCTGCAACAGCCC TCCAGCTCGGGGTGGCTTGTTAGAGTAGATGTGAAGGTTTCAGGTCACAGCCTGTTGGAC TACTGCTGGGTATGGGGGGGTGCTTTGTCTGCACCCCTTGTTTCTTTTTTTAAGTCTTAA ATGATGCCTCCCTTCCAAGCCATCATCCTTTCCCCAACTCTCCACTCCCACCCTTGGCCG AAGCATAGATTGTAACCCCCTCTGCTCCCCTCTGAAATTGGCCTTTGGTGAGGAATTCAG GGCTTTCCCCATATCTTCTCCCCCTACCTTAATCGAGGGGTGCTGCTTTTTCCTTCCTCC TCCTCAAATCCCTTTTTGCACCATCACCACCCAACACTTTCCATGGCACTTCCTTGCTTT GGCCAGAAGCCATCAGGTAAGGTTGGAAAGAGTCTCTGACCGCCCTCATTTAGTTTTGGA ACCATGTTTATTTACTCTCCACCAGCCTGGGAAATGAATATTGGGTTCTCAGCCCTGCCA CCCTCTGCTGTCATCATCAGCTGATGCGTTTTTAGCTCAGGTTTTGATAAGATGAAAGAA CAGTCACCAGGGCTACTCAGACCTGCCAGCTCTCGAAGTCCTTGGTGGTTAAACTTGGAG AAAGGCCACGGAAGACACTTGTAAGCACACACAATCCCTCTGAATGAATTGTTTTCTTTT CCTGTAATTGCTTTTGCTTTTAAAAATTGAAGAAGTTTTGAAGGTATCTCATTTGGTCAT CCTTGCAATCCAATTTGGGTCTAGTTTGGAATCTGACAACTGGAACAAAAAGAATCTTGA ATTCGGTGCATACTTTGGTTTTGGTGCTGCTGCTTCTCACGGTCCTCAGCAGGGATTAAG AAAGAACTCGGTGTGCACGGCAGATCCCCGAAATTGGCGGGCTTGACTTTCCGGCAAATT GCTGCGTTTTTCCACTTTTCTGTTCAGGACCACTAAATGCTGAGGTGTGGATGCATACCG AAATAAAAGCAATTCATTGTGTTCTAAGGGTTTTTTTTTTTTTAATTTAGCGTTTGTATA AAACCACCTTTTGAAGCAGCAACTATCAAGTCTGAAAAGCAATTGATGTTTCCATTAATC TTTTTCTGGGGAAAACCTTAGTTCTAAGGATTTAACATCCTGTAAGTAAAGTTTAACATA ACAGTATTCCATAAGCAGCCTTTTTATTGTCAGACCATTGCCTGATTTTAATATAATAAA AAGAAGTGTGCG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 959-1073, - strand, RNAz p=0.9884 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 959-1073, - strand, RNAz p=0.9884 |
| Aligned organism(s): 56 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
| 58-207, gnl|bosTau2|chr13 (59369277-59369128) | |
| 58-207, gnl|canFam2|chr12 (48722313-48722161) | |
| 58-207, gnl|canFam2|chr24 (39559352-39559230) | |
| 58-207, gnl|danRer3|chrNA (27707940-27707818) | |
| 58-207, gnl|danRer3|chrNA (222345810-222345662) | |
| 58-207, gnl|dasNov1|scaffold_75998 (2955-3098) | |
| 58-207, gnl|dasNov1|scaffold_75998 (3125-2973) | |
| 58-207, gnl|echTel1|scaffold_312243 (38032-38177) | |
| 58-207, gnl|echTel1|scaffold_312243 (38204-38050) | |
| 58-207, gnl|fr1|chrUn (61354489-61354609) | |
| 58-207, gnl|fr1|chrUn (61354632-61354489) | |
| 58-207, gnl|galGal2|chr20 (13355935-13356057) | |
| 58-207, gnl|galGal2|chr20 (13356084-13355932) | |
| 58-207, gnl|hg17|chr2 (143134709-143134849) | |
| 58-207, gnl|hg17|chr20 (3290802-3290954) | |
| 58-207, gnl|Hg17|chr20 (48146765-48146616) | |
| 58-207, gnl|loxAfr1|scaffold_5514 (315-167) | |
| 58-207, gnl|loxAfr1|scaffold_6799 (63861-63983) | |
| 58-207, gnl|Mm7|chr2 (167358632-167358483) | |
| 58-207, gnl|mm7|chr3 (61033689-61033824) | |
| 58-207, gnl|mm7|chr3 (61033851-61033700) | |
| 58-207, gnl|monDom2|scaffold_1 (161665721-161665589) | |
| 58-207, gnl|monDom2|scaffold_1 (161665562-161665714) | |
| 58-207, gnl|oryCun1|scaffold_175424 (4161-4288) | |
| 58-207, gnl|oryCun1|scaffold_175424 (4315-4179) | |
| 58-207, gnl|panTro1|chr13 (32169304-32169444) | |
| 58-207, gnl|panTro1|chr21 (3274197-3274349) | |
| 58-207, gnl|rheMac2|chr10 (36686448-36686600) | |
| 58-207, gnl|rheMac2|chr12 (6077246-6077386) | |
| 58-207, gnl|rn3|chr2 (30802695-30802553) | |
| 58-207, gnl|rn3|chr2 (30802526-30802678) | |
| 58-207, gnl|tetNig1|chr15_random (644049-644169) | |
| 58-207, gnl|tetNig1|chr15_random (644192-644049) | |
| 58-207, gnl|xenTro1|scaffold_165 (603572-603694) | |
| 58-207, gnl|xenTro1|scaffold_165 (603721-603571) | |
| 208-687, gnl|bosTau2|chr25 (1996461-1995984) | |
| 208-687, gnl|canFam2|chr8 (5450396-5450778) | |
| 208-687, gnl|dasNov1|scaffold_124822 (453-732) | |
| 208-687, gnl|echTel1|scaffold_324963 (57121-56823) | |
| 208-687, gnl|galGal2|chr20 (13360035-13359749) | |
| 208-687, gnl|hg17|chr14 (21377329-21377624) | |
| 208-687, gnl|Hg17|chr8 (100085081-100084601) | |
| 208-687, gnl|loxAfr1|scaffold_5514 (785-483) | |
| 208-687, gnl|Mm7|chr3 (107838344-107838797) | |
| 208-687, gnl|monDom2|scaffold_32 (24232559-24232269) | |
| 208-687, gnl|oryCun1|scaffold_175424 (4770-4488) | |
| 208-687, gnl|panTro1|chr15 (20290458-20290753) | |
| 208-687, gnl|rheMac2|chr7 (84605230-84605531) | |
| 208-687, gnl|rn3|chr15 (29318812-29319022) | |
| 301-629, gnl|bosTau2|chr11 (80366728-80367057) | |
| 301-629, gnl|Hg17|chr9 (129633466-129633741) | |
| 301-629, gnl|Mm7|chr3 (107838437-107838725) | |
| 881-1231, gnl|bosTau2|chr18 (43526479-43526825) | |
| 1409-1888, gnl|bosTau2|chr29 (17346757-17346293) | |
| 1409-1888, gnl|Hg17|chr8 (100083904-100083425) | |
| 1409-1888, gnl|Mm7|chr6 (94507148-94507604) |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 58-207, gnl|bosTau2|chr13 (59369277-59369128) | |
| 58-207, gnl|canFam2|chr12 (48722313-48722161) | |
| 58-207, gnl|canFam2|chr24 (39559352-39559230) | |
| 58-207, gnl|danRer3|chrNA (27707940-27707818) | |
| 58-207, gnl|danRer3|chrNA (222345810-222345662) | |
| 58-207, gnl|dasNov1|scaffold_75998 (2955-3098) | |
| 58-207, gnl|dasNov1|scaffold_75998 (3125-2973) | |
| 58-207, gnl|echTel1|scaffold_312243 (38032-38177) | |
| 58-207, gnl|echTel1|scaffold_312243 (38204-38050) | |
| 58-207, gnl|fr1|chrUn (61354489-61354609) | |
| 58-207, gnl|fr1|chrUn (61354632-61354489) | |
| 58-207, gnl|galGal2|chr20 (13355935-13356057) | |
| 58-207, gnl|galGal2|chr20 (13356084-13355932) | |
| 58-207, gnl|hg17|chr2 (143134709-143134849) | |
| 58-207, gnl|hg17|chr20 (3290802-3290954) | |
| 58-207, gnl|Hg17|chr20 (48146765-48146616) | |
| 58-207, gnl|loxAfr1|scaffold_5514 (315-167) | |
| 58-207, gnl|loxAfr1|scaffold_6799 (63861-63983) | |
| 58-207, gnl|Mm7|chr2 (167358632-167358483) | |
| 58-207, gnl|mm7|chr3 (61033689-61033824) | |
| 58-207, gnl|mm7|chr3 (61033851-61033700) | |
| 58-207, gnl|monDom2|scaffold_1 (161665721-161665589) | |
| 58-207, gnl|monDom2|scaffold_1 (161665562-161665714) | |
| 58-207, gnl|oryCun1|scaffold_175424 (4161-4288) | |
| 58-207, gnl|oryCun1|scaffold_175424 (4315-4179) | |
| 58-207, gnl|panTro1|chr13 (32169304-32169444) | |
| 58-207, gnl|panTro1|chr21 (3274197-3274349) | |
| 58-207, gnl|rheMac2|chr10 (36686448-36686600) | |
| 58-207, gnl|rheMac2|chr12 (6077246-6077386) | |
| 58-207, gnl|rn3|chr2 (30802695-30802553) | |
| 58-207, gnl|rn3|chr2 (30802526-30802678) | |
| 58-207, gnl|tetNig1|chr15_random (644049-644169) | |
| 58-207, gnl|tetNig1|chr15_random (644192-644049) | |
| 58-207, gnl|xenTro1|scaffold_165 (603572-603694) | |
| 58-207, gnl|xenTro1|scaffold_165 (603721-603571) | |
| 208-687, gnl|bosTau2|chr25 (1996461-1995984) | |
| 208-687, gnl|canFam2|chr8 (5450396-5450778) | |
| 208-687, gnl|dasNov1|scaffold_124822 (453-732) | |
| 208-687, gnl|echTel1|scaffold_324963 (57121-56823) | |
| 208-687, gnl|galGal2|chr20 (13360035-13359749) | |
| 208-687, gnl|hg17|chr14 (21377329-21377624) | |
| 208-687, gnl|Hg17|chr8 (100085081-100084601) | |
| 208-687, gnl|loxAfr1|scaffold_5514 (785-483) | |
| 208-687, gnl|Mm7|chr3 (107838344-107838797) | |
| 208-687, gnl|monDom2|scaffold_32 (24232559-24232269) | |
| 208-687, gnl|oryCun1|scaffold_175424 (4770-4488) | |
| 208-687, gnl|panTro1|chr15 (20290458-20290753) | |
| 208-687, gnl|rheMac2|chr7 (84605230-84605531) | |
| 208-687, gnl|rn3|chr15 (29318812-29319022) | |
| 301-629, gnl|bosTau2|chr11 (80366728-80367057) | |
| 301-629, gnl|Hg17|chr9 (129633466-129633741) | |
| 301-629, gnl|Mm7|chr3 (107838437-107838725) | |
| 881-1231, gnl|bosTau2|chr18 (43526479-43526825) | |
| 1409-1888, gnl|bosTau2|chr29 (17346757-17346293) | |
| 1409-1888, gnl|Hg17|chr8 (100083904-100083425) | |
| 1409-1888, gnl|Mm7|chr6 (94507148-94507604) |
| Expressed library(ies): 48 entry(ies) | More info |
| Expressed library(ies): 48 entry(ies) | Help | Less info |
| amn (0.835422) | |
| vin (0.665115) | |
| ste (0.540833) | |
| sug (0.509165) | |
| nms (0.427716) | |
| eje (0.395335) | |
| bla (0.373042) | |
| ill (0.351185) | |
| sin (0.349895) | |
| nje (0.33184) | |
| cty (0.31224) | |
| fat (0.294855) | |
| cte (0.29274) | |
| ldo (0.291008) | |
| cga (0.279096) | |
| fce (0.271592) | |
| thg (0.253582) | |
| eep (0.245128) | |
| cly (0.241284) | |
| eru (0.240096) | |
| cbe (0.239234) | |
| med (0.232504) | |
| mgp (0.230681) | |
| col (0.195008) | |
| nlu (0.191681) | |
| sag (0.182715) | |
| fbs (0.175346) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| csp (0.161186) | |
| mga (0.160205) | |
| eli (0.151814) | |
| cag (0.151194) | |
| bfe (0.149858) | |
| ski (0.146735) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| lyg (0.133103) | |
| ova (0.129132) | |
| cbr (0.127975) | |
| tra (0.123092) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| spc (0.113366) | |
| nbm (0.0993246) | |
| jej (0.0989218) |
| Expressed library(ies): 48 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.835422) | |
| vin (0.665115) | |
| ste (0.540833) | |
| sug (0.509165) | |
| nms (0.427716) | |
| eje (0.395335) | |
| bla (0.373042) | |
| ill (0.351185) | |
| sin (0.349895) | |
| nje (0.33184) | |
| cty (0.31224) | |
| fat (0.294855) | |
| cte (0.29274) | |
| ldo (0.291008) | |
| cga (0.279096) | |
| fce (0.271592) | |
| thg (0.253582) | |
| eep (0.245128) | |
| cly (0.241284) | |
| eru (0.240096) | |
| cbe (0.239234) | |
| med (0.232504) | |
| mgp (0.230681) | |
| col (0.195008) | |
| nlu (0.191681) | |
| sag (0.182715) | |
| fbs (0.175346) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| csp (0.161186) | |
| mga (0.160205) | |
| eli (0.151814) | |
| cag (0.151194) | |
| bfe (0.149858) | |
| ski (0.146735) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| lyg (0.133103) | |
| ova (0.129132) | |
| cbr (0.127975) | |
| tra (0.123092) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| spc (0.113366) | |
| nbm (0.0993246) | |
| jej (0.0989218) |