Non-Coding RNA Search

Ss1.1-Thy1-THY010031F12.5

Sequence:


               
               GGGGCGGTGGGGCAAGATGGCGGCGCACCTATCCTATGGGCGAGTTAACCTGAACGTGCT
GCGCGAGGCGGTGCGTCGCGAGCTGCGAGAGTTCCTGGACAAGTGCGCGGGAAGCAAGGC
AATAGTTTGGGATGAGTACCTCACAGGACCATTTGGCCTGATTGCACAGTACTCATTACT
GAAGGAACATGAAGTGGAAAAAATGTTCACACTTAAAGGAAGTCGTTTGCCAGCAGCTGA
TGTCAAGAACATTATTTTTTTTGTCAGACCCAGGCTAGAATTGATGGATATAATTGCTGA
AAATGTGCTCAGTGAAGACAGACGTGGCCCAGCCAGAGATTTCCACATTTTGTTTGTACC
ACGACGTAGCTTATTGTGTGAACAGCGGTTAAAGGATCTGGGTGTCTTGGGATCCTTCAT
TCATAGGGAGGAGTACAGCCTAGATCTCATTCCATTTGATGGGGATCTCTTATCCATGGA
GTCAGAGAGTGCATTCAAAGAATGCTACCTGGAGAGCGACCAGACCAGCCTATACCACGC
TGCCAAGGGCCTGATGACACTGCAAGCTCTGTACGGGACGATCCCCCAGATCTTCGGGAA
AGGAGAGTGCGCCCGGCAAGTGGCCAATATGATGATTCGAATGAAGAGAGAGTTTACAGG
AAGCCAAAATTCAATATTTCCTGTTTTTGATAATCTCCTGTTGCTTGATCGGAATGTGGA
TTTATTAACGCCTCTTGCCACTCAGATTACATACGAAAGACTCATTGATGAGATTTATGG
GATTCACAACAGTTTAGTGAAATTACCTCCGGAGAAATTGGCACCTAAGAAACAGGGTGA
TAGTGGGAAGGATCTTCCCACGGAAGTCAAAGAAGCTTCAGCTGAATTCTGCAGAGGAGC
TGTATGCTGAGATCCGAGATAAAAACTTCAATGCAGTGGGCTCCGTGCTGAACAAGAGAG
CCAAGGTGATCTCTGTAGCGTATGAGGAAAGGCACAGCGCCTAGACAGTTGGGGAGATCA
AGCAGTTCGTGTCACAGCTGCCCCACATGCAGGCAGCAAGAGGCTCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGCGGTGGGGCAAGATGGCGGCGCACCTATCCTATGGGCGAGTTAACCTGAACGTGCT
GCGCGAGGCGGTGCGTCGCGAGCTGCGAGAGTTCCTGGACAAGTGCGCGGGAAGCAAGGC
AATAGTTTGGGATGAGTACCTCACAGGACCATTTGGCCTGATTGCACAGTACTCATTACT
GAAGGAACATGAAGTGGAAAAAATGTTCACACTTAAAGGAAGTCGTTTGCCAGCAGCTGA
TGTCAAGAACATTATTTTTTTTGTCAGACCCAGGCTAGAATTGATGGATATAATTGCTGA
AAATGTGCTCAGTGAAGACAGACGTGGCCCAGCCAGAGATTTCCACATTTTGTTTGTACC
ACGACGTAGCTTATTGTGTGAACAGCGGTTAAAGGATCTGGGTGTCTTGGGATCCTTCAT
TCATAGGGAGGAGTACAGCCTAGATCTCATTCCATTTGATGGGGATCTCTTATCCATGGA
GTCAGAGAGTGCATTCAAAGAATGCTACCTGGAGAGCGACCAGACCAGCCTATACCACGC
TGCCAAGGGCCTGATGACACTGCAAGCTCTGTACGGGACGATCCCCCAGATCTTCGGGAA
AGGAGAGTGCGCCCGGCAAGTGGCCAATATGATGATTCGAATGAAGAGAGAGTTTACAGG
AAGCCAAAATTCAATATTTCCTGTTTTTGATAATCTCCTGTTGCTTGATCGGAATGTGGA
TTTATTAACGCCTCTTGCCACTCAGATTACATACGAAAGACTCATTGATGAGATTTATGG
GATTCACAACAGTTTAGTGAAATTACCTCCGGAGAAATTGGCACCTAAGAAACAGGGTGA
TAGTGGGAAGGATCTTCCCACGGAAGTCAAAGAAGCTTCAGCTGAATTCTGCAGAGGAGC
TGTATGCTGAGATCCGAGATAAAAACTTCAATGCAGTGGGCTCCGTGCTGAACAAGAGAG
CCAAGGTGATCTCTGTAGCGTATGAGGAAAGGCACAGCGCCTAGACAGTTGGGGAGATCA
AGCAGTTCGTGTCACAGCTGCCCCACATGCAGGCAGCAAGAGGCTCAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61867306|ref|XP_587315.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61867306|ref|XP_587315.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               790-987, + strand, RNAz p=0.829573

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               790-987, + strand, RNAz p=0.829573

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC016617, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC016617, +

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               1-519, gnl|bosTau2|chr15 (21910393-21909875)
               

               
               1-519, gnl|Hg17|chr12 (121275851-121270685)
               

               
               1-519, gnl|Mm7|chr5 (122818840-122815261)
               


               
               790-987, gnl|bosTau2|chr17 (29050161-29050358)
               

               
               790-987, gnl|canFam2|chr26 (10128258-10128057)
               

               
               790-987, gnl|danRer3|chrUn (71176861-71176663)
               

               
               790-987, gnl|echTel1|scaffold_237547 (3554-3353)
               

               
               790-987, gnl|fr1|chrUn (306272871-306273072)
               

               
               790-987, gnl|galGal2|chr15 (5762904-5763100)
               

               
               790-987, gnl|hg17|chr12 (121253992-121254193)
               

               
               790-987, gnl|Hg17|chr12 (121254192-121253995)
               

               
               790-987, gnl|loxAfr1|scaffold_2019 (36192-36393)
               

               
               790-987, gnl|mm7|chr5 (122804454-122804661)
               

               
               790-987, gnl|Mm7|chr5 (122804660-122804457)
               

               
               790-987, gnl|monDom2|scaffold_97 (2532866-2533067)
               

               
               790-987, gnl|panTro1|chr10 (124315864-124316065)
               

               
               790-987, gnl|rheMac2|chr11 (123491816-123492017)
               

               
               790-987, gnl|rn3|chr12 (34038848-34038644)
               

               
               790-987, gnl|tetNig1|chrUn_random (35030035-35029834)
               

               
               790-987, gnl|xenTro1|scaffold_791 (482566-482767)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-519, gnl|bosTau2|chr15 (21910393-21909875)
               

               
               1-519, gnl|Hg17|chr12 (121275851-121270685)
               

               
               1-519, gnl|Mm7|chr5 (122818840-122815261)
               


               
               790-987, gnl|bosTau2|chr17 (29050161-29050358)
               

               
               790-987, gnl|canFam2|chr26 (10128258-10128057)
               

               
               790-987, gnl|danRer3|chrUn (71176861-71176663)
               

               
               790-987, gnl|echTel1|scaffold_237547 (3554-3353)
               

               
               790-987, gnl|fr1|chrUn (306272871-306273072)
               

               
               790-987, gnl|galGal2|chr15 (5762904-5763100)
               

               
               790-987, gnl|hg17|chr12 (121253992-121254193)
               

               
               790-987, gnl|Hg17|chr12 (121254192-121253995)
               

               
               790-987, gnl|loxAfr1|scaffold_2019 (36192-36393)
               

               
               790-987, gnl|mm7|chr5 (122804454-122804661)
               

               
               790-987, gnl|Mm7|chr5 (122804660-122804457)
               

               
               790-987, gnl|monDom2|scaffold_97 (2532866-2533067)
               

               
               790-987, gnl|panTro1|chr10 (124315864-124316065)
               

               
               790-987, gnl|rheMac2|chr11 (123491816-123492017)
               

               
               790-987, gnl|rn3|chr12 (34038848-34038644)
               

               
               790-987, gnl|tetNig1|chrUn_random (35030035-35029834)
               

               
               790-987, gnl|xenTro1|scaffold_791 (482566-482767)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               spl (0.143184)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)

	1-519, gnl\|bosTau2\|chr15 (21910393-21909875)
	1-519, gnl\|Hg17\|chr12 (121275851-121270685)
	1-519, gnl\|Mm7\|chr5 (122818840-122815261)

	790-987, gnl\|bosTau2\|chr17 (29050161-29050358)
	790-987, gnl\|canFam2\|chr26 (10128258-10128057)
	790-987, gnl\|danRer3\|chrUn (71176861-71176663)
	790-987, gnl\|echTel1\|scaffold_237547 (3554-3353)
	790-987, gnl\|fr1\|chrUn (306272871-306273072)
	790-987, gnl\|galGal2\|chr15 (5762904-5763100)
	790-987, gnl\|hg17\|chr12 (121253992-121254193)
	790-987, gnl\|Hg17\|chr12 (121254192-121253995)
	790-987, gnl\|loxAfr1\|scaffold_2019 (36192-36393)
	790-987, gnl\|mm7\|chr5 (122804454-122804661)
	790-987, gnl\|Mm7\|chr5 (122804660-122804457)
	790-987, gnl\|monDom2\|scaffold_97 (2532866-2533067)
	790-987, gnl\|panTro1\|chr10 (124315864-124316065)
	790-987, gnl\|rheMac2\|chr11 (123491816-123492017)
	790-987, gnl\|rn3\|chr12 (34038848-34038644)
	790-987, gnl\|tetNig1\|chrUn_random (35030035-35029834)
	790-987, gnl\|xenTro1\|scaffold_791 (482566-482767)