Ss1.1-Thy1-THY010032A03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TATTTTCAGAATTCTCCATCCAGACGGGTGACTGTCTGCCTCTGTTACAACCGGTGCCCC ACTGAGGTGCTTCTCTGGCTCTAAAGGCATGATGGCCAAATACTTCAACTTGCTGTTACT TCTTGCTTCCCTCTGGACCACTCGGCTTCTGGTCCAAGGTGCTCTCCGCACTGAAGAGCT TTCCATCTCAGGACCATGCAGAATCATGGGGGTCACCCTGGTGAACAAAAACACACAGTC ACAGCTGAATTTCACAGAAGCCCAGGAGGCCTGTAGGCTGGTGGGACTAACTTTGGCCAG CAAAGACCAAGTTGAAGCAGCAAGGAAATCTGGCTTTGAGACCTGCAGCTATGGATGGGT GAAAGATCAGTTCTTGGTCATCCCTCGGATTTACCCGAACCCCAAGTGTGGGAAGAATGG GAAGGGCGTCCTGGTTTGGAGACATTCCCTCAGTCAGAAGTTCAAGGCCTATTGTCACAA CTCATCTGATACTAGGACTAACTCATGCATTCCAGAAATTATCCCCACCAATGATCCCAC ATTCAACACCAACACTGCACCATACACAACGGAAATGACTGTCAATGACAGAACATCATC ATCATCTACCAATGGGCCTTCTTCCTCTGTTATGTCCACTGTGGCAACCCACTAGTCTTC CTCTGGCTACCACTTCTACTCCACGGAAAAGAAAATTAATTTGCATAACAGAAGCTTTTA TGGAAACTAGCACCATATCTACAGAAACTGAACTGTATATTGAAAACAGGACAGCATTCA AGAATGAAGCCATTGGGTTTGGAGGTATTCCCACAGCCCTGCTGGTGCTCGCGCTCCTCT TCTTTGCTGCTGCAGCTGGCCTCGCAGTTTGCTACG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TATTTTCAGAATTCTCCATCCAGACGGGTGACTGTCTGCCTCTGTTACAACCGGTGCCCC ACTGAGGTGCTTCTCTGGCTCTAAAGGCATGATGGCCAAATACTTCAACTTGCTGTTACT TCTTGCTTCCCTCTGGACCACTCGGCTTCTGGTCCAAGGTGCTCTCCGCACTGAAGAGCT TTCCATCTCAGGACCATGCAGAATCATGGGGGTCACCCTGGTGAACAAAAACACACAGTC ACAGCTGAATTTCACAGAAGCCCAGGAGGCCTGTAGGCTGGTGGGACTAACTTTGGCCAG CAAAGACCAAGTTGAAGCAGCAAGGAAATCTGGCTTTGAGACCTGCAGCTATGGATGGGT GAAAGATCAGTTCTTGGTCATCCCTCGGATTTACCCGAACCCCAAGTGTGGGAAGAATGG GAAGGGCGTCCTGGTTTGGAGACATTCCCTCAGTCAGAAGTTCAAGGCCTATTGTCACAA CTCATCTGATACTAGGACTAACTCATGCATTCCAGAAATTATCCCCACCAATGATCCCAC ATTCAACACCAACACTGCACCATACACAACGGAAATGACTGTCAATGACAGAACATCATC ATCATCTACCAATGGGCCTTCTTCCTCTGTTATGTCCACTGTGGCAACCCACTAGTCTTC CTCTGGCTACCACTTCTACTCCACGGAAAAGAAAATTAATTTGCATAACAGAAGCTTTTA TGGAAACTAGCACCATATCTACAGAAACTGAACTGTATATTGAAAACAGGACAGCATTCA AGAATGAAGCCATTGGGTTTGGAGGTATTCCCACAGCCCTGCTGGTGCTCGCGCTCCTCT TCTTTGCTGCTGCAGCTGGCCTCGCAGTTTGCTACG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 203-316, + strand, RNAz p=0.524867 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 203-316, + strand, RNAz p=0.524867 |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 172-348, gnl|bosTau2|chr15 (27693254-27693430) | |
| 172-348, gnl|canFam2|chr21 (36910727-36911207) | |
| 172-348, gnl|dasNov1|scaffold_5760 (44637-44151) | |
| 172-348, gnl|echTel1|scaffold_178188 (3324-3814) | |
| 172-348, gnl|hg17|chr11 (10542008-10542515) | |
| 172-348, gnl|Hg17|chr11 (10542502-10542326) | |
| 172-348, gnl|loxAfr1|scaffold_942 (147018-146518) | |
| 172-348, gnl|mm7|chr7 (106774630-106775101) | |
| 172-348, gnl|Mm7|chr7 (106775089-106774916) | |
| 172-348, gnl|monDom2|scaffold_10 (60787573-60788071) | |
| 172-348, gnl|oryCun1|scaffold_210897 (136571-136062) | |
| 172-348, gnl|panTro1|chr9 (10776335-10776842) | |
| 172-348, gnl|rheMac2|chr14 (61384987-61384480) | |
| 172-348, gnl|rn3|chr1 (168729002-168729483) | |
| 488-807, gnl|bosTau2|chr15 (27699624-27699933) | |
| 488-807, gnl|canFam2|chr21 (36907042-36907314) | |
| 488-807, gnl|dasNov1|scaffold_5760 (50784-50521) | |
| 488-807, gnl|hg17|chr11 (10538617-10538883) | |
| 488-807, gnl|Hg17|chr11 (10538924-10538615) | |
| 488-807, gnl|mm7|chr7 (106769022-106769279) | |
| 488-807, gnl|Mm7|chr7 (106769320-106769020) | |
| 488-807, gnl|monDom2|scaffold_10 (60780871-60781131) | |
| 488-807, gnl|oryCun1|scaffold_210897 (145235-144972) | |
| 488-807, gnl|panTro1|chr9 (10772948-10773214) | |
| 488-807, gnl|rheMac2|chr14 (61392796-61392533) | |
| 488-807, gnl|rn3|chr1 (168715417-168715662) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 172-348, gnl|bosTau2|chr15 (27693254-27693430) | |
| 172-348, gnl|canFam2|chr21 (36910727-36911207) | |
| 172-348, gnl|dasNov1|scaffold_5760 (44637-44151) | |
| 172-348, gnl|echTel1|scaffold_178188 (3324-3814) | |
| 172-348, gnl|hg17|chr11 (10542008-10542515) | |
| 172-348, gnl|Hg17|chr11 (10542502-10542326) | |
| 172-348, gnl|loxAfr1|scaffold_942 (147018-146518) | |
| 172-348, gnl|mm7|chr7 (106774630-106775101) | |
| 172-348, gnl|Mm7|chr7 (106775089-106774916) | |
| 172-348, gnl|monDom2|scaffold_10 (60787573-60788071) | |
| 172-348, gnl|oryCun1|scaffold_210897 (136571-136062) | |
| 172-348, gnl|panTro1|chr9 (10776335-10776842) | |
| 172-348, gnl|rheMac2|chr14 (61384987-61384480) | |
| 172-348, gnl|rn3|chr1 (168729002-168729483) | |
| 488-807, gnl|bosTau2|chr15 (27699624-27699933) | |
| 488-807, gnl|canFam2|chr21 (36907042-36907314) | |
| 488-807, gnl|dasNov1|scaffold_5760 (50784-50521) | |
| 488-807, gnl|hg17|chr11 (10538617-10538883) | |
| 488-807, gnl|Hg17|chr11 (10538924-10538615) | |
| 488-807, gnl|mm7|chr7 (106769022-106769279) | |
| 488-807, gnl|Mm7|chr7 (106769320-106769020) | |
| 488-807, gnl|monDom2|scaffold_10 (60780871-60781131) | |
| 488-807, gnl|oryCun1|scaffold_210897 (145235-144972) | |
| 488-807, gnl|panTro1|chr9 (10772948-10773214) | |
| 488-807, gnl|rheMac2|chr14 (61392796-61392533) | |
| 488-807, gnl|rn3|chr1 (168715417-168715662) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| nep (0.183925) | |
| pla (0.133672) | |
| eep (0.122564) | |
| med (0.116252) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.183925) | |
| pla (0.133672) | |
| eep (0.122564) | |
| med (0.116252) |