Ss1.1-Thy1-THY010032B05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCAGAGCTTACTGCAGCCTCTCAACTTGAAAATTGACCCTGAGATACAGAATGTGAAGTC TCAGGAGCGGGAGCAGATCAAAACTCTCAACAACAAATTTGCCTGCTTCATCGACAAGGT GCGGTTCCTGGAACAGCAGAACCAGGTGCTGAAGACCAAATGGGAGCTGCTACAACAAAT AGATGTCAGAACCTGTACCATCAACCTGGAGCCCCTCTTTCAGGAGTATATCTCCAGACT TCAGAATCAAGTGAACATGCTTTGTGCAGAAAAAACATCACAGGATACAGAGCTGAACAA CCAGCAGGATCTTGTTGAGGAATTTAGGAAGAAGTATGAGGATGAAATCAACAAGCGGAC AGCTGCCGAGAATGATTTTGTGACACTTAAAAAGGATGTGGACAACGCCTACATAAATAA GGCAGATCTGCAGGCCAAAGTGGACGTACTGAGCCAGGAACTTGCGTTCCTGAAAATCCT CTTTGATGCGGAGCTGTCCCAGATGCAACAGAATGTCACCGAAACCAATGTCATCCTGTC CATGGACAACAGCCGCAACCTGGACCTGAATGACATCATCTCTGAGGTCCAGAGCCAGTA TGAAGAGATTGCCCATAGGAGCAGGGCTGAGGCGGAGGCTCTGTATCATAGCAAGTATGA GGAGCTCCAGATCACGGCCGGGAAGCACGGAGACAGCCTGAAGGAGGTGAAAATGGAGAT CTGTGAGCTGAACCGCATGATCCAGAGGCTACAAGCGGAGATCTCCCAAGTGCGGAAGCA GTGTAAGAATGTGCAAGACTCCATAGCAGATGCTGAGCAGAGGGGAGAAAATGCCCTCAA AGATGCCCAAAACAAGTTGAAGGAGCTGGAGGAAGCTCTGCAGAAGGCCAAAGAGAACCT GGCCTGCCTGCTGCGTGACTACCAGGAGCTGATGAACGTCAAGCTGGCCTTGGATGTGGA GATTGCCACCTACCGCAAGCTGCTGGAGGGCGAGGAGTGCAGGATGTCTGGAGACCTCAG CAGCAACGTGACCGTGTCTGTGACAAGCAGCACCATTTCTTCCAACGTGGCATCCAGGGC TGGCTTTGGGGGCCATGGTTCTGGAGGTAAATGGTCCAGTTCTGGAGGAGGATACAGCTC TGGAAGCAGCAGTTACAGCTCTGGAGGCAGAGGATCCAGCTCCAGAGGTGGTGGTGGAGG GAGCTATGGCTCTGGAGGAAGCTTCAAAGGAGGCTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCAGAGCTTACTGCAGCCTCTCAACTTGAAAATTGACCCTGAGATACAGAATGTGAAGTC TCAGGAGCGGGAGCAGATCAAAACTCTCAACAACAAATTTGCCTGCTTCATCGACAAGGT GCGGTTCCTGGAACAGCAGAACCAGGTGCTGAAGACCAAATGGGAGCTGCTACAACAAAT AGATGTCAGAACCTGTACCATCAACCTGGAGCCCCTCTTTCAGGAGTATATCTCCAGACT TCAGAATCAAGTGAACATGCTTTGTGCAGAAAAAACATCACAGGATACAGAGCTGAACAA CCAGCAGGATCTTGTTGAGGAATTTAGGAAGAAGTATGAGGATGAAATCAACAAGCGGAC AGCTGCCGAGAATGATTTTGTGACACTTAAAAAGGATGTGGACAACGCCTACATAAATAA GGCAGATCTGCAGGCCAAAGTGGACGTACTGAGCCAGGAACTTGCGTTCCTGAAAATCCT CTTTGATGCGGAGCTGTCCCAGATGCAACAGAATGTCACCGAAACCAATGTCATCCTGTC CATGGACAACAGCCGCAACCTGGACCTGAATGACATCATCTCTGAGGTCCAGAGCCAGTA TGAAGAGATTGCCCATAGGAGCAGGGCTGAGGCGGAGGCTCTGTATCATAGCAAGTATGA GGAGCTCCAGATCACGGCCGGGAAGCACGGAGACAGCCTGAAGGAGGTGAAAATGGAGAT CTGTGAGCTGAACCGCATGATCCAGAGGCTACAAGCGGAGATCTCCCAAGTGCGGAAGCA GTGTAAGAATGTGCAAGACTCCATAGCAGATGCTGAGCAGAGGGGAGAAAATGCCCTCAA AGATGCCCAAAACAAGTTGAAGGAGCTGGAGGAAGCTCTGCAGAAGGCCAAAGAGAACCT GGCCTGCCTGCTGCGTGACTACCAGGAGCTGATGAACGTCAAGCTGGCCTTGGATGTGGA GATTGCCACCTACCGCAAGCTGCTGGAGGGCGAGGAGTGCAGGATGTCTGGAGACCTCAG CAGCAACGTGACCGTGTCTGTGACAAGCAGCACCATTTCTTCCAACGTGGCATCCAGGGC TGGCTTTGGGGGCCATGGTTCTGGAGGTAAATGGTCCAGTTCTGGAGGAGGATACAGCTC TGGAAGCAGCAGTTACAGCTCTGGAGGCAGAGGATCCAGCTCCAGAGGTGGTGGTGGAGG GAGCTATGGCTCTGGAGGAAGCTTCAAAGGAGGCTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 117-1216, + strand, RNAz p=0.997711 | |
| 779-898, - strand, RNAz p=0.936008 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 117-1216, + strand, RNAz p=0.997711 | |
| 779-898, - strand, RNAz p=0.936008 |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 117-341, gnl|bosTau2|chr5 (20135335-20135111) | |
| 117-341, gnl|Hg17|chr12 (51330606-51330382) | |
| 117-341, gnl|Mm7|chr15 (101802684-101802460) | |
| 490-655, gnl|bosTau2|chr5 (20192520-20192355) | |
| 490-655, gnl|Hg17|chr12 (51357532-51357367) | |
| 490-655, gnl|Mm7|chr15 (101834079-101833914) | |
| 779-1014, gnl|bosTau2|chr5 (20298365-20298131) | |
| 779-1014, gnl|Hg17|chr12 (51487918-51487685) | |
| 779-1014, gnl|Mm7|chr15 (101905916-101905685) | |
| 780-1003, gnl|bosTau2|chr5 (20131465-20131242) | |
| 780-1003, gnl|canFam2|chr27 (5456420-5456172) | |
| 780-1003, gnl|danRer3|chr23 (6313527-6313754) | |
| 780-1003, gnl|dasNov1|scaffold_36707 (6368-6146) | |
| 780-1003, gnl|echTel1|scaffold_312604 (72830-72602) | |
| 780-1003, gnl|fr1|chrUn (207856602-207856379) | |
| 780-1003, gnl|galGal2|chrUn (7791882-7791644) | |
| 780-1003, gnl|hg17|chr12 (51326767-51327015) | |
| 780-1003, gnl|Hg17|chr12 (51327013-51326790) | |
| 780-1003, gnl|loxAfr1|scaffold_55141 (13298-13547) | |
| 780-1003, gnl|mm7|chr15 (101799209-101799454) | |
| 780-1003, gnl|Mm7|chr15 (101799452-101799229) | |
| 780-1003, gnl|monDom2|scaffold_168 (484738-484990) | |
| 780-1003, gnl|oryCun1|scaffold_176185 (45412-45659) | |
| 780-1003, gnl|panTro1|chr10 (52551655-52551903) | |
| 780-1003, gnl|rheMac2|chr11 (49717868-49718116) | |
| 780-1003, gnl|rn3|chr7 (140578968-140579213) | |
| 780-1003, gnl|tetNig1|chrUn_random (43167339-43167135) | |
| 780-1003, gnl|xenTro1|scaffold_312 (989807-990032) | |
| 865-997, gnl|bosTau2|chr19 (37398338-37398470) | |
| 865-997, gnl|Hg17|chr17 (40344267-40344135) | |
| 865-997, gnl|Mm7|chr11 (103002213-103002081) | |
| 1038-1236, gnl|bosTau2|chr5 (20129978-20129780) | |
| 1038-1236, gnl|Hg17|chr12 (51325485-51325242) | |
| 1038-1236, gnl|Mm7|chr15 (101797823-101797532) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 117-341, gnl|bosTau2|chr5 (20135335-20135111) | |
| 117-341, gnl|Hg17|chr12 (51330606-51330382) | |
| 117-341, gnl|Mm7|chr15 (101802684-101802460) | |
| 490-655, gnl|bosTau2|chr5 (20192520-20192355) | |
| 490-655, gnl|Hg17|chr12 (51357532-51357367) | |
| 490-655, gnl|Mm7|chr15 (101834079-101833914) | |
| 779-1014, gnl|bosTau2|chr5 (20298365-20298131) | |
| 779-1014, gnl|Hg17|chr12 (51487918-51487685) | |
| 779-1014, gnl|Mm7|chr15 (101905916-101905685) | |
| 780-1003, gnl|bosTau2|chr5 (20131465-20131242) | |
| 780-1003, gnl|canFam2|chr27 (5456420-5456172) | |
| 780-1003, gnl|danRer3|chr23 (6313527-6313754) | |
| 780-1003, gnl|dasNov1|scaffold_36707 (6368-6146) | |
| 780-1003, gnl|echTel1|scaffold_312604 (72830-72602) | |
| 780-1003, gnl|fr1|chrUn (207856602-207856379) | |
| 780-1003, gnl|galGal2|chrUn (7791882-7791644) | |
| 780-1003, gnl|hg17|chr12 (51326767-51327015) | |
| 780-1003, gnl|Hg17|chr12 (51327013-51326790) | |
| 780-1003, gnl|loxAfr1|scaffold_55141 (13298-13547) | |
| 780-1003, gnl|mm7|chr15 (101799209-101799454) | |
| 780-1003, gnl|Mm7|chr15 (101799452-101799229) | |
| 780-1003, gnl|monDom2|scaffold_168 (484738-484990) | |
| 780-1003, gnl|oryCun1|scaffold_176185 (45412-45659) | |
| 780-1003, gnl|panTro1|chr10 (52551655-52551903) | |
| 780-1003, gnl|rheMac2|chr11 (49717868-49718116) | |
| 780-1003, gnl|rn3|chr7 (140578968-140579213) | |
| 780-1003, gnl|tetNig1|chrUn_random (43167339-43167135) | |
| 780-1003, gnl|xenTro1|scaffold_312 (989807-990032) | |
| 865-997, gnl|bosTau2|chr19 (37398338-37398470) | |
| 865-997, gnl|Hg17|chr17 (40344267-40344135) | |
| 865-997, gnl|Mm7|chr11 (103002213-103002081) | |
| 1038-1236, gnl|bosTau2|chr5 (20129978-20129780) | |
| 1038-1236, gnl|Hg17|chr12 (51325485-51325242) | |
| 1038-1236, gnl|Mm7|chr15 (101797823-101797532) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| med (0.116252) |