Ss1.1-Thy1-THY010032C08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCTCATCTCTTGGCTTCATCTTCACACAGCAGCCGCCGCCCATCCCTCTTTGTGTGCTTG GGCAAGCCGTGGAGCTAGTGGCGGCGACTGTTGGCGTTGAAGGCAAAGGAGAGGGGACGT TACGGGGAAGTTGCTGACAGGCGGTCTCTTCCACACCCCGCCATCTGACAGGTCTCAAAC ATGTCTGACAAAAGTGAATTAAAGGCAGAGTTGGAACGTAAGAAGCAGCGATTGGCCCAA ATCAGAGAGGAAAAGAAGAGGAAAGAAGAAGAAAGGAAGAAAAAGGAAACTGATCAGAAG AAGGAAGCAGTCACTTCTGTGCAAGAAGAGTCAGATCTTGAAAAAAAAAGAAGAGAAGCT GAAGCATTGCTTCAAAGCATGGGGCTAACTCCAGAATCCCCCATTGTCCCTCCTCCTATG TCTCCATCCTCCAAATCTGTGAGCACACCAAGCGAAGCTGGAAGCCAAGACTCTGGAGAT GGCGCAGTGGGATCTAGACGGGGACCTATTAAACTTGGAATGGCTAAAATTACGCAAGTT GACTTTCCTCCTCGTGAAATCGTCACATATACAAAGGAAACCCAGACTCCAGTAATGGCT CAACCCAAAGAAGATGAAGAGGAAGAAGATGATGTAGTGACTCCTAAACCACCTATTGAA CCTGAAGAAGAGAAAACTTTAAAGAAAGATGAGGAAAGTGATAGTAAAGCACCCCCTCAT GAGCTGACTGAAGAAGAAAAGCAGCAAATCTTGCACTCTGAGGAATTTTTAAGTTTCTTT GACCATTCTACAAGAATTGTAGAAAGAGCTCTTTCTGAGCAGATCAAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCTCATCTCTTGGCTTCATCTTCACACAGCAGCCGCCGCCCATCCCTCTTTGTGTGCTTG GGCAAGCCGTGGAGCTAGTGGCGGCGACTGTTGGCGTTGAAGGCAAAGGAGAGGGGACGT TACGGGGAAGTTGCTGACAGGCGGTCTCTTCCACACCCCGCCATCTGACAGGTCTCAAAC ATGTCTGACAAAAGTGAATTAAAGGCAGAGTTGGAACGTAAGAAGCAGCGATTGGCCCAA ATCAGAGAGGAAAAGAAGAGGAAAGAAGAAGAAAGGAAGAAAAAGGAAACTGATCAGAAG AAGGAAGCAGTCACTTCTGTGCAAGAAGAGTCAGATCTTGAAAAAAAAAGAAGAGAAGCT GAAGCATTGCTTCAAAGCATGGGGCTAACTCCAGAATCCCCCATTGTCCCTCCTCCTATG TCTCCATCCTCCAAATCTGTGAGCACACCAAGCGAAGCTGGAAGCCAAGACTCTGGAGAT GGCGCAGTGGGATCTAGACGGGGACCTATTAAACTTGGAATGGCTAAAATTACGCAAGTT GACTTTCCTCCTCGTGAAATCGTCACATATACAAAGGAAACCCAGACTCCAGTAATGGCT CAACCCAAAGAAGATGAAGAGGAAGAAGATGATGTAGTGACTCCTAAACCACCTATTGAA CCTGAAGAAGAGAAAACTTTAAAGAAAGATGAGGAAAGTGATAGTAAAGCACCCCCTCAT GAGCTGACTGAAGAAGAAAAGCAGCAAATCTTGCACTCTGAGGAATTTTTAAGTTTCTTT GACCATTCTACAAGAATTGTAGAAAGAGCTCTTTCTGAGCAGATCAAC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 50 entry(ies) | More info |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
| 28-173, gnl|bosTau2|chr2 (13550314-13550170) | |
| 28-173, gnl|canFam2|chr36 (19124199-19124548) | |
| 28-173, gnl|dasNov1|scaffold_36771 (10373-10055) | |
| 28-173, gnl|echTel1|scaffold_321276 (250913-251255) | |
| 28-173, gnl|hg17|chr2 (172369694-172370047) | |
| 28-173, gnl|Hg17|chr2 (172369748-172369892) | |
| 28-173, gnl|mm7|chr2 (71055604-71055900) | |
| 28-173, gnl|Mm7|chr2 (71055658-71055786) | |
| 28-173, gnl|monDom2|scaffold_2 (70432481-70432841) | |
| 28-173, gnl|oryCun1|scaffold_187815 (8196-8605) | |
| 28-173, gnl|panTro1|chr13 (62013210-62013563) | |
| 28-173, gnl|rheMac2|chr12 (35330570-35330923) | |
| 28-173, gnl|rn3|chr3 (53377172-53377466) | |
| 181-590, gnl|bosTau2|chr23 (7394930-7395334) | |
| 181-590, gnl|Hg17|chr10 (51694744-51695150) | |
| 705-828, gnl|bosTau2|chr2 (13518151-13518028) | |
| 705-828, gnl|canFam2|chr36 (19160817-19160995) | |
| 705-828, gnl|canFam2|chr36 (19160834-19160992) | |
| 705-828, gnl|danRer3|chr3 (11214764-11214597) | |
| 705-828, gnl|danRer3|chr3 (11214758-11214600) | |
| 705-828, gnl|dasNov1|scaffold_21746 (12284-12462) | |
| 705-828, gnl|dasNov1|scaffold_21746 (12301-12459) | |
| 705-828, gnl|echTel1|scaffold_295096 (6256-6078) | |
| 705-828, gnl|echTel1|scaffold_295096 (6239-6081) | |
| 705-828, gnl|fr1|chrUn (7285932-7286102) | |
| 705-828, gnl|fr1|chrUn (7285941-7286096) | |
| 705-828, gnl|galGal2|chr7 (18708727-18708549) | |
| 705-828, gnl|galGal2|chr7 (18708710-18708552) | |
| 705-828, gnl|hg17|chr10 (51695276-51695434) | |
| 705-828, gnl|hg17|chr2 (172407923-172408101) | |
| 705-828, gnl|Hg17|chr2 (172407931-172408054) | |
| 705-828, gnl|loxAfr1|scaffold_9633 (537-715) | |
| 705-828, gnl|loxAfr1|scaffold_9633 (554-712) | |
| 705-828, gnl|mm7|chr2 (71090710-71090888) | |
| 705-828, gnl|mm7|chr2 (71090729-71090885) | |
| 705-828, gnl|Mm7|chr2 (71090718-71090841) | |
| 705-828, gnl|monDom2|scaffold_2 (70479349-70479527) | |
| 705-828, gnl|monDom2|scaffold_2 (70479366-70479524) | |
| 705-828, gnl|oryCun1|scaffold_163927 (10032-9854) | |
| 705-828, gnl|oryCun1|scaffold_163927 (10013-9857) | |
| 705-828, gnl|panTro1|chr13 (62051544-62051722) | |
| 705-828, gnl|panTro1|chr13 (62051560-62051719) | |
| 705-828, gnl|rheMac2|chr12 (35368224-35368402) | |
| 705-828, gnl|rheMac2|chr12 (35368241-35368399) | |
| 705-828, gnl|rn3|chr3 (53410206-53410384) | |
| 705-828, gnl|rn3|chr3 (53410225-53410381) | |
| 705-828, gnl|tetNig1|chr2 (11460470-11460300) | |
| 705-828, gnl|tetNig1|chr2 (11460461-11460306) | |
| 705-828, gnl|xenTro1|scaffold_65 (1959344-1959165) | |
| 705-828, gnl|xenTro1|scaffold_65 (1959327-1959168) |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 28-173, gnl|bosTau2|chr2 (13550314-13550170) | |
| 28-173, gnl|canFam2|chr36 (19124199-19124548) | |
| 28-173, gnl|dasNov1|scaffold_36771 (10373-10055) | |
| 28-173, gnl|echTel1|scaffold_321276 (250913-251255) | |
| 28-173, gnl|hg17|chr2 (172369694-172370047) | |
| 28-173, gnl|Hg17|chr2 (172369748-172369892) | |
| 28-173, gnl|mm7|chr2 (71055604-71055900) | |
| 28-173, gnl|Mm7|chr2 (71055658-71055786) | |
| 28-173, gnl|monDom2|scaffold_2 (70432481-70432841) | |
| 28-173, gnl|oryCun1|scaffold_187815 (8196-8605) | |
| 28-173, gnl|panTro1|chr13 (62013210-62013563) | |
| 28-173, gnl|rheMac2|chr12 (35330570-35330923) | |
| 28-173, gnl|rn3|chr3 (53377172-53377466) | |
| 181-590, gnl|bosTau2|chr23 (7394930-7395334) | |
| 181-590, gnl|Hg17|chr10 (51694744-51695150) | |
| 705-828, gnl|bosTau2|chr2 (13518151-13518028) | |
| 705-828, gnl|canFam2|chr36 (19160817-19160995) | |
| 705-828, gnl|canFam2|chr36 (19160834-19160992) | |
| 705-828, gnl|danRer3|chr3 (11214764-11214597) | |
| 705-828, gnl|danRer3|chr3 (11214758-11214600) | |
| 705-828, gnl|dasNov1|scaffold_21746 (12284-12462) | |
| 705-828, gnl|dasNov1|scaffold_21746 (12301-12459) | |
| 705-828, gnl|echTel1|scaffold_295096 (6256-6078) | |
| 705-828, gnl|echTel1|scaffold_295096 (6239-6081) | |
| 705-828, gnl|fr1|chrUn (7285932-7286102) | |
| 705-828, gnl|fr1|chrUn (7285941-7286096) | |
| 705-828, gnl|galGal2|chr7 (18708727-18708549) | |
| 705-828, gnl|galGal2|chr7 (18708710-18708552) | |
| 705-828, gnl|hg17|chr10 (51695276-51695434) | |
| 705-828, gnl|hg17|chr2 (172407923-172408101) | |
| 705-828, gnl|Hg17|chr2 (172407931-172408054) | |
| 705-828, gnl|loxAfr1|scaffold_9633 (537-715) | |
| 705-828, gnl|loxAfr1|scaffold_9633 (554-712) | |
| 705-828, gnl|mm7|chr2 (71090710-71090888) | |
| 705-828, gnl|mm7|chr2 (71090729-71090885) | |
| 705-828, gnl|Mm7|chr2 (71090718-71090841) | |
| 705-828, gnl|monDom2|scaffold_2 (70479349-70479527) | |
| 705-828, gnl|monDom2|scaffold_2 (70479366-70479524) | |
| 705-828, gnl|oryCun1|scaffold_163927 (10032-9854) | |
| 705-828, gnl|oryCun1|scaffold_163927 (10013-9857) | |
| 705-828, gnl|panTro1|chr13 (62051544-62051722) | |
| 705-828, gnl|panTro1|chr13 (62051560-62051719) | |
| 705-828, gnl|rheMac2|chr12 (35368224-35368402) | |
| 705-828, gnl|rheMac2|chr12 (35368241-35368399) | |
| 705-828, gnl|rn3|chr3 (53410206-53410384) | |
| 705-828, gnl|rn3|chr3 (53410225-53410381) | |
| 705-828, gnl|tetNig1|chr2 (11460470-11460300) | |
| 705-828, gnl|tetNig1|chr2 (11460461-11460306) | |
| 705-828, gnl|xenTro1|scaffold_65 (1959344-1959165) | |
| 705-828, gnl|xenTro1|scaffold_65 (1959327-1959168) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| fce (0.271592) | |
| cmu (0.186393) | |
| spl (0.143184) | |
| ute (0.132784) | |
| kid (0.129735) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| cty (0.10408) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fce (0.271592) | |
| cmu (0.186393) | |
| spl (0.143184) | |
| ute (0.132784) | |
| kid (0.129735) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| cty (0.10408) |