Non-Coding RNA Search

Ss1.1-Thy1-THY010032E08.5

Sequence:


               
               AATCAGCGCAACCCCGGTTCCCGGTTCTAAACTCTCCATCCATCCGCTTCTCCCCAGACT
CCGTGGCTGAGGATCATGGGGCCCCGAGCCCTCGTCCTGCTGCTGTCGGGGACCCTGGCC
CTGACTGGGACCCGGGCGGGTCCCCACTCCCTGAGGTATTTCGACACCGCCGTGTCCCGG
CCCGACCGCGGGAAGCCCCGTTTCATCGAAGTCGGCTACGTGGACGACACGCAGTTCGTG
TGGTTCGACAGCGACGCCCCGAATCCGCGGATGGAGCCGCGGGCGCCGTGGATACAGCAG
GAGGGTCAGGAGTATTGGGATCGGGAGACACAGATCAGCAAGGACAACGCACAGACTTAC
CGAGTGAACCTGAACAACCTGCGCGGCTACTACAACCAGAGCGAGGCCGGGTCTCACACC
CTCCAGAGCATGTACGGCTGCGACGTGGGACCAGACGGGCTCTTCCTCCGCGGGTACAGT
CAGTTCGCCTACGACGGCGCGGATTACATCGCCCTGAACGAGGACCTGCGCTCCTGGACC
GCGGCGGACACGGCGGCTCAGATCACCAAGCGCAAGAGGGAGGCGGCCGATGCGGCGGAG
CAAATGAGAAGCTACCTGGAGGGCGCCTGTGTGGAGGGGCTCCAGAAATACCTGGAGATG
GGGAAGGACACGCTGCAGCGCGCAGAGCCTCCAAAGACACATGTGACCCGCCACCCCAGC
TCTGACCTGGGGGTCACCTTGAGGTGCTGGGCCCTGGGCTTCTACCCTAAGGAGATCTCC
CTGACCTGGCAGCGCGAGGGCCAGGACCAGAGCCAGGACATGGAGCTGGTGGAGACCAGG
CCCTCAGGGGATGGGACCTTCCAGAAGTGGGCGGCCCTGGTGGTGCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATCAGCGCAACCCCGGTTCCCGGTTCTAAACTCTCCATCCATCCGCTTCTCCCCAGACT
CCGTGGCTGAGGATCATGGGGCCCCGAGCCCTCGTCCTGCTGCTGTCGGGGACCCTGGCC
CTGACTGGGACCCGGGCGGGTCCCCACTCCCTGAGGTATTTCGACACCGCCGTGTCCCGG
CCCGACCGCGGGAAGCCCCGTTTCATCGAAGTCGGCTACGTGGACGACACGCAGTTCGTG
TGGTTCGACAGCGACGCCCCGAATCCGCGGATGGAGCCGCGGGCGCCGTGGATACAGCAG
GAGGGTCAGGAGTATTGGGATCGGGAGACACAGATCAGCAAGGACAACGCACAGACTTAC
CGAGTGAACCTGAACAACCTGCGCGGCTACTACAACCAGAGCGAGGCCGGGTCTCACACC
CTCCAGAGCATGTACGGCTGCGACGTGGGACCAGACGGGCTCTTCCTCCGCGGGTACAGT
CAGTTCGCCTACGACGGCGCGGATTACATCGCCCTGAACGAGGACCTGCGCTCCTGGACC
GCGGCGGACACGGCGGCTCAGATCACCAAGCGCAAGAGGGAGGCGGCCGATGCGGCGGAG
CAAATGAGAAGCTACCTGGAGGGCGCCTGTGTGGAGGGGCTCCAGAAATACCTGGAGATG
GGGAAGGACACGCTGCAGCGCGCAGAGCCTCCAAAGACACATGTGACCCGCCACCCCAGC
TCTGACCTGGGGGTCACCTTGAGGTGCTGGGCCCTGGGCTTCTACCCTAAGGAGATCTCC
CTGACCTGGCAGCGCGAGGGCCAGGACCAGAGCCAGGACATGGAGCTGGTGGAGACCAGG
CCCTCAGGGGATGGGACCTTCCAGAAGTGGGCGGCCCTGGTGGTGCCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|51507639|emb|CAE46345.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|51507639|emb|CAE46345.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               143-410, gnl|bosTau2|chr23 (20551142-20551409)
               

               
               143-410, gnl|Hg17|chr6 (31432710-31432443)
               

               
               143-410, gnl|Mm7|chr17 (33358731-33358998)
               


               
               443-693, gnl|bosTau2|chr20 (36655627-36655873)
               

               
               443-693, gnl|Hg17|chr6 (31347071-31346829)
               

               
               443-693, gnl|Mm7|chr17 (32077846-32077606)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               143-410, gnl|bosTau2|chr23 (20551142-20551409)
               

               
               143-410, gnl|Hg17|chr6 (31432710-31432443)
               

               
               143-410, gnl|Mm7|chr17 (33358731-33358998)
               


               
               443-693, gnl|bosTau2|chr20 (36655627-36655873)
               

               
               443-693, gnl|Hg17|chr6 (31347071-31346829)
               

               
               443-693, gnl|Mm7|chr17 (32077846-32077606)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nco (0.323468)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.323468)

	143-410, gnl\|bosTau2\|chr23 (20551142-20551409)
	143-410, gnl\|Hg17\|chr6 (31432710-31432443)
	143-410, gnl\|Mm7\|chr17 (33358731-33358998)

	443-693, gnl\|bosTau2\|chr20 (36655627-36655873)
	443-693, gnl\|Hg17\|chr6 (31347071-31346829)
	443-693, gnl\|Mm7\|chr17 (32077846-32077606)