Ss1.1-Thy1-THY010033B06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATGGCGTACCAGAGCCTCCGGCTGGAGTACCTGCAGATCCCACCGGTCAGCCGCGCCTAC ACCACCGCCTGTGTTCTCACCACCGCCGCCGTGCAGTTGGAATTGATCACACCTTTTCAG TTGTACTTCAATCCTGAATTAATCTTTAAACACTTTCAGATATGGAGGCTAATCACCAAT TTTTTATTTTTTGGGCCAGTTGGATTCAATTTTTTATTTAATATGATTTTTCTGTATCGG TACTGTCGAATGCTAGAAGAAGGCTCTTTCCGAGGTCGGACAGCAGACTTTGTATTTATG TTCCTTTTTGGTGGATTCTTAATGACTCTTTTTGGTTTGTTTGTGAGCTTAGTGTTCTTG GGCCAGGCCTTTACAATCATGCTTGTCTACGTGTGGAGCCGAAGGAACCCATATGTCCGC ATGAACTTCTTCGGCCTTCTCAATTTCCAGGCCCCCTTTCTACCCTGGGTGCTCATGGGC TTTTCCTTGTTGTTGGGGAACTCAATCATTGTGGACCTCTTGGGTATTGCAGTTGGACAC ATATATTTTTTCTTGGAAGATGTATTTCCCAATCAGCCTGGCGGAATACGAATTCTGAAA ACACCATCTATTCTGAAGGCTATTTTTGATACACCAGATGAAGATCCAAATTACAATCCA CTACCTGAAGAGCGGCCGGGAGGCTTCGCCTGGGGCGAGGGCCAGCGCCTCGGCGGTTAA AGCGGCAGTGCCAATGACGAGACCCAGCTGGGAAGGACTCAGAGACGTACCCACTGGGAT TCTTTTATCCTTTGTGTTGCAAAAGCGTGGACATTTTTGACAGCTTGACAAGATTTTAAC TCCAGAAGCACTTTATGAAATGACACACTGATTCATCCAGAAGACATTTCCAGCATTTTG CCAGTGGTTCCTCACTACCCTGGCCCTGAAAGTGTAATCTCTTGGAGCCAAAAAACTGGA GAAACAAATACCCTGCCGCCTCTAAGGAACAGGTACTCGAGTCCTTGAGTTCAGCGGTAA TGGGCAGAGGTCTTTTCTTCCTCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATGGCGTACCAGAGCCTCCGGCTGGAGTACCTGCAGATCCCACCGGTCAGCCGCGCCTAC ACCACCGCCTGTGTTCTCACCACCGCCGCCGTGCAGTTGGAATTGATCACACCTTTTCAG TTGTACTTCAATCCTGAATTAATCTTTAAACACTTTCAGATATGGAGGCTAATCACCAAT TTTTTATTTTTTGGGCCAGTTGGATTCAATTTTTTATTTAATATGATTTTTCTGTATCGG TACTGTCGAATGCTAGAAGAAGGCTCTTTCCGAGGTCGGACAGCAGACTTTGTATTTATG TTCCTTTTTGGTGGATTCTTAATGACTCTTTTTGGTTTGTTTGTGAGCTTAGTGTTCTTG GGCCAGGCCTTTACAATCATGCTTGTCTACGTGTGGAGCCGAAGGAACCCATATGTCCGC ATGAACTTCTTCGGCCTTCTCAATTTCCAGGCCCCCTTTCTACCCTGGGTGCTCATGGGC TTTTCCTTGTTGTTGGGGAACTCAATCATTGTGGACCTCTTGGGTATTGCAGTTGGACAC ATATATTTTTTCTTGGAAGATGTATTTCCCAATCAGCCTGGCGGAATACGAATTCTGAAA ACACCATCTATTCTGAAGGCTATTTTTGATACACCAGATGAAGATCCAAATTACAATCCA CTACCTGAAGAGCGGCCGGGAGGCTTCGCCTGGGGCGAGGGCCAGCGCCTCGGCGGTTAA AGCGGCAGTGCCAATGACGAGACCCAGCTGGGAAGGACTCAGAGACGTACCCACTGGGAT TCTTTTATCCTTTGTGTTGCAAAAGCGTGGACATTTTTGACAGCTTGACAAGATTTTAAC TCCAGAAGCACTTTATGAAATGACACACTGATTCATCCAGAAGACATTTCCAGCATTTTG CCAGTGGTTCCTCACTACCCTGGCCCTGAAAGTGTAATCTCTTGGAGCCAAAAAACTGGA GAAACAAATACCCTGCCGCCTCTAAGGAACAGGTACTCGAGTCCTTGAGTTCAGCGGTAA TGGGCAGAGGTCTTTTCTTCCTCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 408-526, - strand, RNAz p=0.94245 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 408-526, - strand, RNAz p=0.94245 |
| Aligned organism(s): 70 entry(ies) | More info |
| Aligned organism(s): 70 entry(ies) | Help | Less info |
| 201-326, gnl|bosTau2|chr19 (18580319-18580194) | |
| 201-326, gnl|canFam2|chr5 (34321040-34320888) | |
| 201-326, gnl|canFam2|chr5 (34320940-34321040) | |
| 201-326, gnl|danRer3|chr5 (65798083-65797949) | |
| 201-326, gnl|dasNov1|scaffold_92467 (5737-5644) | |
| 201-326, gnl|dasNov1|scaffold_92467 (5645-5781) | |
| 201-326, gnl|echTel1|scaffold_170118 (2534-2382) | |
| 201-326, gnl|echTel1|scaffold_170118 (2437-2534) | |
| 201-326, gnl|fr1|chrUn (278151498-278151636) | |
| 201-326, gnl|galGal2|chr19 (3164343-3164193) | |
| 201-326, gnl|galGal2|chr19 (3164243-3164343) | |
| 201-326, gnl|hg17|chr17 (5325333-5325485) | |
| 201-326, gnl|Hg17|chr17 (5325466-5325341) | |
| 201-326, gnl|hg17|chr7 (137189396-137189482) | |
| 201-326, gnl|mm7|chr11 (71096117-71096269) | |
| 201-326, gnl|mm7|chr11 (71096214-71096117) | |
| 201-326, gnl|Mm7|chr11 (71096250-71096125) | |
| 201-326, gnl|monDom2|scaffold_223 (319560-319438) | |
| 201-326, gnl|monDom2|scaffold_223 (319460-319560) | |
| 201-326, gnl|oryCun1|scaffold_188860 (77531-77683) | |
| 201-326, gnl|oryCun1|scaffold_188860 (77628-77531) | |
| 201-326, gnl|panTro1|chr19_random (46460751-46460599) | |
| 201-326, gnl|panTro1|chr6 (139937222-139937308) | |
| 201-326, gnl|rheMac2|chr16 (5224412-5224564) | |
| 201-326, gnl|rheMac2|chr3 (175552473-175552570) | |
| 201-326, gnl|rn3|chr10 (57929986-57930138) | |
| 201-326, gnl|rn3|chr10 (57930083-57929986) | |
| 201-326, gnl|tetNig1|chrUn_random (110561523-110561390) | |
| 201-326, gnl|xenTro1|scaffold_21 (1793541-1793699) | |
| 328-526, gnl|bosTau2|chr19 (18579230-18579032) | |
| 328-526, gnl|canFam2|chr5 (34322393-34322125) | |
| 328-526, gnl|danRer3|chr5 (65801820-65801573) | |
| 328-526, gnl|dasNov1|scaffold_22783 (14970-14704) | |
| 328-526, gnl|echTel1|scaffold_170118 (3657-3394) | |
| 328-526, gnl|fr1|chrUn (278151102-278151369) | |
| 328-526, gnl|galGal2|chr19 (3165052-3164817) | |
| 328-526, gnl|hg17|chr17 (5324400-5324666) | |
| 328-526, gnl|Hg17|chr17 (5324626-5324428) | |
| 328-526, gnl|loxAfr1|scaffold_70738 (6946-6685) | |
| 328-526, gnl|mm7|chr11 (71094986-71095251) | |
| 328-526, gnl|Mm7|chr11 (71095212-71095014) | |
| 328-526, gnl|monDom2|scaffold_223 (319849-319630) | |
| 328-526, gnl|oryCun1|scaffold_188860 (76178-76441) | |
| 328-526, gnl|panTro1|chr19_random (46461686-46461420) | |
| 328-526, gnl|rheMac2|chr16 (5223437-5223703) | |
| 328-526, gnl|rn3|chr10 (57928900-57929164) | |
| 328-526, gnl|tetNig1|chrUn_random (110562159-110561920) | |
| 328-526, gnl|xenTro1|scaffold_21 (1791971-1792221) | |
| 346-525, gnl|bosTau2|chr17 (41487638-41487459) | |
| 346-525, gnl|canFam2|chr26 (31754376-31754139) | |
| 346-525, gnl|danRer3|chr8 (23809278-23809030) | |
| 346-525, gnl|dasNov1|scaffold_138713 (4250-4038) | |
| 346-525, gnl|echTel1|scaffold_190519 (2873-2668) | |
| 346-525, gnl|fr1|chrUn (278151108-278151331) | |
| 346-525, gnl|galGal2|chr15 (7958456-7958668) | |
| 346-525, gnl|hg17|chr22 (22504362-22504600) | |
| 346-525, gnl|Hg17|chr22 (22504577-22504398) | |
| 346-525, gnl|loxAfr1|scaffold_66599 (2603-2390) | |
| 346-525, gnl|mm7|chr10 (75550319-75550080) | |
| 346-525, gnl|Mm7|chr10 (75550101-75550280) | |
| 346-525, gnl|monDom2|scaffold_259 (60453-60658) | |
| 346-525, gnl|oryCun1|scaffold_188860 (76184-76406) | |
| 346-525, gnl|panTro1|chr23 (22534010-22534248) | |
| 346-525, gnl|rheMac2|chr16 (5223460-5223668) | |
| 346-525, gnl|rn3|chr20 (13164821-13165060) | |
| 346-525, gnl|tetNig1|chrUn_random (110562157-110561956) | |
| 346-525, gnl|xenTro1|scaffold_21 (1791972-1792176) | |
| 607-1042, gnl|bosTau2|chr19 (18576378-18575945) | |
| 607-1042, gnl|Hg17|chr17 (5318841-5318417) | |
| 607-1042, gnl|Mm7|chr11 (71092008-71091592) |
| Aligned organism(s): 70 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 201-326, gnl|bosTau2|chr19 (18580319-18580194) | |
| 201-326, gnl|canFam2|chr5 (34321040-34320888) | |
| 201-326, gnl|canFam2|chr5 (34320940-34321040) | |
| 201-326, gnl|danRer3|chr5 (65798083-65797949) | |
| 201-326, gnl|dasNov1|scaffold_92467 (5737-5644) | |
| 201-326, gnl|dasNov1|scaffold_92467 (5645-5781) | |
| 201-326, gnl|echTel1|scaffold_170118 (2534-2382) | |
| 201-326, gnl|echTel1|scaffold_170118 (2437-2534) | |
| 201-326, gnl|fr1|chrUn (278151498-278151636) | |
| 201-326, gnl|galGal2|chr19 (3164343-3164193) | |
| 201-326, gnl|galGal2|chr19 (3164243-3164343) | |
| 201-326, gnl|hg17|chr17 (5325333-5325485) | |
| 201-326, gnl|Hg17|chr17 (5325466-5325341) | |
| 201-326, gnl|hg17|chr7 (137189396-137189482) | |
| 201-326, gnl|mm7|chr11 (71096117-71096269) | |
| 201-326, gnl|mm7|chr11 (71096214-71096117) | |
| 201-326, gnl|Mm7|chr11 (71096250-71096125) | |
| 201-326, gnl|monDom2|scaffold_223 (319560-319438) | |
| 201-326, gnl|monDom2|scaffold_223 (319460-319560) | |
| 201-326, gnl|oryCun1|scaffold_188860 (77531-77683) | |
| 201-326, gnl|oryCun1|scaffold_188860 (77628-77531) | |
| 201-326, gnl|panTro1|chr19_random (46460751-46460599) | |
| 201-326, gnl|panTro1|chr6 (139937222-139937308) | |
| 201-326, gnl|rheMac2|chr16 (5224412-5224564) | |
| 201-326, gnl|rheMac2|chr3 (175552473-175552570) | |
| 201-326, gnl|rn3|chr10 (57929986-57930138) | |
| 201-326, gnl|rn3|chr10 (57930083-57929986) | |
| 201-326, gnl|tetNig1|chrUn_random (110561523-110561390) | |
| 201-326, gnl|xenTro1|scaffold_21 (1793541-1793699) | |
| 328-526, gnl|bosTau2|chr19 (18579230-18579032) | |
| 328-526, gnl|canFam2|chr5 (34322393-34322125) | |
| 328-526, gnl|danRer3|chr5 (65801820-65801573) | |
| 328-526, gnl|dasNov1|scaffold_22783 (14970-14704) | |
| 328-526, gnl|echTel1|scaffold_170118 (3657-3394) | |
| 328-526, gnl|fr1|chrUn (278151102-278151369) | |
| 328-526, gnl|galGal2|chr19 (3165052-3164817) | |
| 328-526, gnl|hg17|chr17 (5324400-5324666) | |
| 328-526, gnl|Hg17|chr17 (5324626-5324428) | |
| 328-526, gnl|loxAfr1|scaffold_70738 (6946-6685) | |
| 328-526, gnl|mm7|chr11 (71094986-71095251) | |
| 328-526, gnl|Mm7|chr11 (71095212-71095014) | |
| 328-526, gnl|monDom2|scaffold_223 (319849-319630) | |
| 328-526, gnl|oryCun1|scaffold_188860 (76178-76441) | |
| 328-526, gnl|panTro1|chr19_random (46461686-46461420) | |
| 328-526, gnl|rheMac2|chr16 (5223437-5223703) | |
| 328-526, gnl|rn3|chr10 (57928900-57929164) | |
| 328-526, gnl|tetNig1|chrUn_random (110562159-110561920) | |
| 328-526, gnl|xenTro1|scaffold_21 (1791971-1792221) | |
| 346-525, gnl|bosTau2|chr17 (41487638-41487459) | |
| 346-525, gnl|canFam2|chr26 (31754376-31754139) | |
| 346-525, gnl|danRer3|chr8 (23809278-23809030) | |
| 346-525, gnl|dasNov1|scaffold_138713 (4250-4038) | |
| 346-525, gnl|echTel1|scaffold_190519 (2873-2668) | |
| 346-525, gnl|fr1|chrUn (278151108-278151331) | |
| 346-525, gnl|galGal2|chr15 (7958456-7958668) | |
| 346-525, gnl|hg17|chr22 (22504362-22504600) | |
| 346-525, gnl|Hg17|chr22 (22504577-22504398) | |
| 346-525, gnl|loxAfr1|scaffold_66599 (2603-2390) | |
| 346-525, gnl|mm7|chr10 (75550319-75550080) | |
| 346-525, gnl|Mm7|chr10 (75550101-75550280) | |
| 346-525, gnl|monDom2|scaffold_259 (60453-60658) | |
| 346-525, gnl|oryCun1|scaffold_188860 (76184-76406) | |
| 346-525, gnl|panTro1|chr23 (22534010-22534248) | |
| 346-525, gnl|rheMac2|chr16 (5223460-5223668) | |
| 346-525, gnl|rn3|chr20 (13164821-13165060) | |
| 346-525, gnl|tetNig1|chrUn_random (110562157-110561956) | |
| 346-525, gnl|xenTro1|scaffold_21 (1791972-1792176) | |
| 607-1042, gnl|bosTau2|chr19 (18576378-18575945) | |
| 607-1042, gnl|Hg17|chr17 (5318841-5318417) | |
| 607-1042, gnl|Mm7|chr11 (71092008-71091592) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| pla (0.267344) | |
| med (0.232504) | |
| fli (0.202881) | |
| nep (0.183925) | |
| nje (0.16592) | |
| nco (0.161734) | |
| cli (0.152812) | |
| pty (0.142714) | |
| csk (0.140746) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| bla (0.124347) | |
| tra (0.123092) | |
| ecc (0.115035) | |
| eje (0.0988338) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.267344) | |
| med (0.232504) | |
| fli (0.202881) | |
| nep (0.183925) | |
| nje (0.16592) | |
| nco (0.161734) | |
| cli (0.152812) | |
| pty (0.142714) | |
| csk (0.140746) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| bla (0.124347) | |
| tra (0.123092) | |
| ecc (0.115035) | |
| eje (0.0988338) |