Ss1.1-Thy1-THY010033B07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCCGGCCGCGGCGCGGACGCCGCGCAGCCACGGCGGCGGGGCCTCGGCGGGCGCCGGCTC AGCCCGCCCCCTTCTCCGCGCCCCGCCCCGCGTCTACGCCTGCCGGGCTGCTGTCAGCTC CCTCGGCGTGCCACCAAGCCGAGGTGCATGCTGAGCCGCTGCGGCTGCCGGCTGCTGCAC GTCCTAGGCCTTAGCTTCCCGCTCCTGACCCGCCGGCCGCTTTTCCTCTGTCCGCACCGC CTCATGAGGCCGAAGGTCGTGTTCGTCCTCGGAGGTCCCGGCGCCGGCAAGGGGACCCAG TGCGCCCGTATCGTCGAGAAATATGGCTACACACACCTTTCTGCCGGAGAACTTCTTCGT GATGAAAGGAAGAACCCCGATTCACAGTATGGCGAACTGATTGAAAAGTACATTAAAGAT GGAAAGATCGTGCCAGTTGAGATAACCATCAGTTTGTTAAGGAGGGAAATGGATCAGACA ATGGCGGCCAATGCTCAGAAGAATAAATTCTTAATTGATGGGTTTCCAAGAAATCAAGAC AACCTTCAAGGTTGGAACAAGACCATGGATGGGAAAGCTGATGTATCTTTCGTTTTGTTT TTTGACTGTAATAATGAGATCTGTATTGAACGATGTCTTGAGAGGGGAAAGAGTAGTGGT AGGAGTGATGACAACAGAGAGAGCTTGGAAAAGAGAATTCAAACCTATCTTCAGTCAACA AAGCCAATTATTGACTTATATGAAGAAATGGGGAAAGTCAAGAAAATAGATGCTTCTAAA TCTGTTGATGAAGTTTTTGATGAAGTTGTGAAGATTTTTGACAAAGAAGGCTAACTCTAT ATCTGAAAGCATCCTCGAAATCATGCTTGAATATTGCTTTGATAGCTGCTATCACAATCC CTTTTTAAGGCAATTTTAATCTTTCGTAATTACATCTCAATTAACGGCTGGAAAGTATGT AGTAAGACAAATTAAATTTTTTATCGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCCGGCCGCGGCGCGGACGCCGCGCAGCCACGGCGGCGGGGCCTCGGCGGGCGCCGGCTC AGCCCGCCCCCTTCTCCGCGCCCCGCCCCGCGTCTACGCCTGCCGGGCTGCTGTCAGCTC CCTCGGCGTGCCACCAAGCCGAGGTGCATGCTGAGCCGCTGCGGCTGCCGGCTGCTGCAC GTCCTAGGCCTTAGCTTCCCGCTCCTGACCCGCCGGCCGCTTTTCCTCTGTCCGCACCGC CTCATGAGGCCGAAGGTCGTGTTCGTCCTCGGAGGTCCCGGCGCCGGCAAGGGGACCCAG TGCGCCCGTATCGTCGAGAAATATGGCTACACACACCTTTCTGCCGGAGAACTTCTTCGT GATGAAAGGAAGAACCCCGATTCACAGTATGGCGAACTGATTGAAAAGTACATTAAAGAT GGAAAGATCGTGCCAGTTGAGATAACCATCAGTTTGTTAAGGAGGGAAATGGATCAGACA ATGGCGGCCAATGCTCAGAAGAATAAATTCTTAATTGATGGGTTTCCAAGAAATCAAGAC AACCTTCAAGGTTGGAACAAGACCATGGATGGGAAAGCTGATGTATCTTTCGTTTTGTTT TTTGACTGTAATAATGAGATCTGTATTGAACGATGTCTTGAGAGGGGAAAGAGTAGTGGT AGGAGTGATGACAACAGAGAGAGCTTGGAAAAGAGAATTCAAACCTATCTTCAGTCAACA AAGCCAATTATTGACTTATATGAAGAAATGGGGAAAGTCAAGAAAATAGATGCTTCTAAA TCTGTTGATGAAGTTTTTGATGAAGTTGTGAAGATTTTTGACAAAGAAGGCTAACTCTAT ATCTGAAAGCATCCTCGAAATCATGCTTGAATATTGCTTTGATAGCTGCTATCACAATCC CTTTTTAAGGCAATTTTAATCTTTCGTAATTACATCTCAATTAACGGCTGGAAAGTATGT AGTAAGACAAATTAAATTTTTTATCGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 465-618, + strand, RNAz p=0.929663 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 465-618, + strand, RNAz p=0.929663 |
| Aligned organism(s): 64 entry(ies) | More info |
| Aligned organism(s): 64 entry(ies) | Help | Less info |
| 1-318, gnl|bosTau2|chr27 (16820132-16820450) | |
| 1-318, gnl|Hg17|chr1 (47511486-47511808) | |
| 1-318, gnl|Mm7|chr4 (114363684-114363405) | |
| 465-618, gnl|bosTau2|chr27 (16852039-16852192) | |
| 465-618, gnl|canFam2|chr15 (16333440-16333260) | |
| 465-618, gnl|canFam2|chr15 (16333435-16333276) | |
| 465-618, gnl|canFam2|chr15 (16333427-16333329) | |
| 465-618, gnl|danRer3|chr15 (17988243-17988063) | |
| 465-618, gnl|danRer3|chr15 (17988230-17988076) | |
| 465-618, gnl|danRer3|chr15 (17988230-17988132) | |
| 465-618, gnl|dasNov1|scaffold_14252 (9094-9276) | |
| 465-618, gnl|dasNov1|scaffold_96783 (3948-4086) | |
| 465-618, gnl|dasNov1|scaffold_96783 (3959-4030) | |
| 465-618, gnl|echTel1|scaffold_221068 (1083-901) | |
| 465-618, gnl|echTel1|scaffold_221068 (1080-917) | |
| 465-618, gnl|echTel1|scaffold_221068 (1058-973) | |
| 465-618, gnl|fr1|chrUn (142707650-142707492) | |
| 465-618, gnl|fr1|chrUn (142707794-142707705) | |
| 465-618, gnl|galGal2|chr8 (22189933-22190115) | |
| 465-618, gnl|hg17|chr1 (47550634-47550814) | |
| 465-618, gnl|Hg17|chr1 (47550646-47550799) | |
| 465-618, gnl|hg17|chr16 (88052980-88053140) | |
| 465-618, gnl|hg17|chr6 (35841965-35842067) | |
| 465-618, gnl|loxAfr1|scaffold_22959 (9034-8853) | |
| 465-618, gnl|loxAfr1|scaffold_22959 (9022-8866) | |
| 465-618, gnl|loxAfr1|scaffold_22959 (9010-8925) | |
| 465-618, gnl|mm7|chr4 (114341487-114341309) | |
| 465-618, gnl|Mm7|chr4 (114341475-114341322) | |
| 465-618, gnl|mm7|chr5 (68817965-68818130) | |
| 465-618, gnl|mm7|chr5 (68817976-68818074) | |
| 465-618, gnl|monDom2|scaffold_70 (5564884-5564705) | |
| 465-618, gnl|oryCun1|scaffold_146335 (17337-17515) | |
| 465-618, gnl|oryCun1|scaffold_146335 (17337-17502) | |
| 465-618, gnl|oryCun1|scaffold_146335 (17348-17443) | |
| 465-618, gnl|panTro1|chr1 (45763654-45763831) | |
| 465-618, gnl|panTro1|chr18_random (44101422-44101262) | |
| 465-618, gnl|panTro1|chr5 (36299425-36299527) | |
| 465-618, gnl|rheMac2|chr1 (50192659-50192839) | |
| 465-618, gnl|rheMac2|chr20 (87575616-87575780) | |
| 465-618, gnl|rheMac2|chr4 (35517993-35518079) | |
| 465-618, gnl|rn3|chr3 (155549342-155549175) | |
| 465-618, gnl|rn3|chr3 (155549331-155549233) | |
| 465-618, gnl|rn3|chr5 (135330028-135329850) | |
| 465-618, gnl|tetNig1|chr15 (3129971-3129803) | |
| 465-618, gnl|tetNig1|chr15 (3129999-3129861) | |
| 465-618, gnl|xenTro1|scaffold_14 (1879419-1879240) | |
| 465-618, gnl|xenTro1|scaffold_2065 (25392-25552) | |
| 465-618, gnl|xenTro1|scaffold_2065 (25404-25490) | |
| 793-998, gnl|bosTau2|chr27 (16855628-16855833) | |
| 793-998, gnl|canFam2|chr15 (16330491-16330328) | |
| 793-998, gnl|dasNov1|scaffold_14252 (11876-12040) | |
| 793-998, gnl|echTel1|scaffold_314725 (3934-4096) | |
| 793-998, gnl|galGal2|chr8 (22191701-22191887) | |
| 793-998, gnl|hg17|chr1 (47554378-47554541) | |
| 793-998, gnl|Hg17|chr1 (47554396-47554588) | |
| 793-998, gnl|loxAfr1|scaffold_22959 (5840-5679) | |
| 793-998, gnl|mm7|chr4 (114338212-114338054) | |
| 793-998, gnl|Mm7|chr4 (114338194-114337997) | |
| 793-998, gnl|monDom2|scaffold_70 (5561333-5561172) | |
| 793-998, gnl|oryCun1|scaffold_146335 (20358-20518) | |
| 793-998, gnl|panTro1|chr1 (45767390-45767553) | |
| 793-998, gnl|rheMac2|chr1 (50196718-50196881) | |
| 793-998, gnl|rn3|chr5 (135327198-135327048) | |
| 793-998, gnl|xenTro1|scaffold_14 (1877260-1877100) |
| Aligned organism(s): 64 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-318, gnl|bosTau2|chr27 (16820132-16820450) | |
| 1-318, gnl|Hg17|chr1 (47511486-47511808) | |
| 1-318, gnl|Mm7|chr4 (114363684-114363405) | |
| 465-618, gnl|bosTau2|chr27 (16852039-16852192) | |
| 465-618, gnl|canFam2|chr15 (16333440-16333260) | |
| 465-618, gnl|canFam2|chr15 (16333435-16333276) | |
| 465-618, gnl|canFam2|chr15 (16333427-16333329) | |
| 465-618, gnl|danRer3|chr15 (17988243-17988063) | |
| 465-618, gnl|danRer3|chr15 (17988230-17988076) | |
| 465-618, gnl|danRer3|chr15 (17988230-17988132) | |
| 465-618, gnl|dasNov1|scaffold_14252 (9094-9276) | |
| 465-618, gnl|dasNov1|scaffold_96783 (3948-4086) | |
| 465-618, gnl|dasNov1|scaffold_96783 (3959-4030) | |
| 465-618, gnl|echTel1|scaffold_221068 (1083-901) | |
| 465-618, gnl|echTel1|scaffold_221068 (1080-917) | |
| 465-618, gnl|echTel1|scaffold_221068 (1058-973) | |
| 465-618, gnl|fr1|chrUn (142707650-142707492) | |
| 465-618, gnl|fr1|chrUn (142707794-142707705) | |
| 465-618, gnl|galGal2|chr8 (22189933-22190115) | |
| 465-618, gnl|hg17|chr1 (47550634-47550814) | |
| 465-618, gnl|Hg17|chr1 (47550646-47550799) | |
| 465-618, gnl|hg17|chr16 (88052980-88053140) | |
| 465-618, gnl|hg17|chr6 (35841965-35842067) | |
| 465-618, gnl|loxAfr1|scaffold_22959 (9034-8853) | |
| 465-618, gnl|loxAfr1|scaffold_22959 (9022-8866) | |
| 465-618, gnl|loxAfr1|scaffold_22959 (9010-8925) | |
| 465-618, gnl|mm7|chr4 (114341487-114341309) | |
| 465-618, gnl|Mm7|chr4 (114341475-114341322) | |
| 465-618, gnl|mm7|chr5 (68817965-68818130) | |
| 465-618, gnl|mm7|chr5 (68817976-68818074) | |
| 465-618, gnl|monDom2|scaffold_70 (5564884-5564705) | |
| 465-618, gnl|oryCun1|scaffold_146335 (17337-17515) | |
| 465-618, gnl|oryCun1|scaffold_146335 (17337-17502) | |
| 465-618, gnl|oryCun1|scaffold_146335 (17348-17443) | |
| 465-618, gnl|panTro1|chr1 (45763654-45763831) | |
| 465-618, gnl|panTro1|chr18_random (44101422-44101262) | |
| 465-618, gnl|panTro1|chr5 (36299425-36299527) | |
| 465-618, gnl|rheMac2|chr1 (50192659-50192839) | |
| 465-618, gnl|rheMac2|chr20 (87575616-87575780) | |
| 465-618, gnl|rheMac2|chr4 (35517993-35518079) | |
| 465-618, gnl|rn3|chr3 (155549342-155549175) | |
| 465-618, gnl|rn3|chr3 (155549331-155549233) | |
| 465-618, gnl|rn3|chr5 (135330028-135329850) | |
| 465-618, gnl|tetNig1|chr15 (3129971-3129803) | |
| 465-618, gnl|tetNig1|chr15 (3129999-3129861) | |
| 465-618, gnl|xenTro1|scaffold_14 (1879419-1879240) | |
| 465-618, gnl|xenTro1|scaffold_2065 (25392-25552) | |
| 465-618, gnl|xenTro1|scaffold_2065 (25404-25490) | |
| 793-998, gnl|bosTau2|chr27 (16855628-16855833) | |
| 793-998, gnl|canFam2|chr15 (16330491-16330328) | |
| 793-998, gnl|dasNov1|scaffold_14252 (11876-12040) | |
| 793-998, gnl|echTel1|scaffold_314725 (3934-4096) | |
| 793-998, gnl|galGal2|chr8 (22191701-22191887) | |
| 793-998, gnl|hg17|chr1 (47554378-47554541) | |
| 793-998, gnl|Hg17|chr1 (47554396-47554588) | |
| 793-998, gnl|loxAfr1|scaffold_22959 (5840-5679) | |
| 793-998, gnl|mm7|chr4 (114338212-114338054) | |
| 793-998, gnl|Mm7|chr4 (114338194-114337997) | |
| 793-998, gnl|monDom2|scaffold_70 (5561333-5561172) | |
| 793-998, gnl|oryCun1|scaffold_146335 (20358-20518) | |
| 793-998, gnl|panTro1|chr1 (45767390-45767553) | |
| 793-998, gnl|rheMac2|chr1 (50196718-50196881) | |
| 793-998, gnl|rn3|chr5 (135327198-135327048) | |
| 793-998, gnl|xenTro1|scaffold_14 (1877260-1877100) |
| Expressed library(ies): 47 entry(ies) | More info |
| Expressed library(ies): 47 entry(ies) | Help | Less info |
| sin (0.69979) | |
| rec (0.692281) | |
| lin (0.582411) | |
| pro (0.512033) | |
| nco (0.485201) | |
| lyg (0.399308) | |
| sme (0.305437) | |
| jej (0.296765) | |
| hyp (0.285673) | |
| che (0.272628) | |
| ova (0.258264) | |
| tra (0.246184) | |
| pgl (0.236967) | |
| spc (0.226732) | |
| nms (0.213858) | |
| tes (0.207814) | |
| nbm (0.198649) | |
| col (0.195008) | |
| sag (0.182715) | |
| mgm (0.180343) | |
| mcp (0.170648) | |
| cut (0.169924) | |
| nje (0.16592) | |
| cki (0.165235) | |
| csp (0.161186) | |
| mga (0.160205) | |
| ctl (0.153069) | |
| cli (0.152812) | |
| lun (0.150489) | |
| isp (0.150376) | |
| liv (0.146284) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| cst (0.140036) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| kid (0.129735) | |
| ret (0.128733) | |
| thg (0.126791) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) | |
| cty (0.10408) | |
| eje (0.0988338) | |
| ldo (0.0970026) |
| Expressed library(ies): 47 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sin (0.69979) | |
| rec (0.692281) | |
| lin (0.582411) | |
| pro (0.512033) | |
| nco (0.485201) | |
| lyg (0.399308) | |
| sme (0.305437) | |
| jej (0.296765) | |
| hyp (0.285673) | |
| che (0.272628) | |
| ova (0.258264) | |
| tra (0.246184) | |
| pgl (0.236967) | |
| spc (0.226732) | |
| nms (0.213858) | |
| tes (0.207814) | |
| nbm (0.198649) | |
| col (0.195008) | |
| sag (0.182715) | |
| mgm (0.180343) | |
| mcp (0.170648) | |
| cut (0.169924) | |
| nje (0.16592) | |
| cki (0.165235) | |
| csp (0.161186) | |
| mga (0.160205) | |
| ctl (0.153069) | |
| cli (0.152812) | |
| lun (0.150489) | |
| isp (0.150376) | |
| liv (0.146284) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| cst (0.140036) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| kid (0.129735) | |
| ret (0.128733) | |
| thg (0.126791) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) | |
| cty (0.10408) | |
| eje (0.0988338) | |
| ldo (0.0970026) |