Ss1.1-Thy1-THY010033C06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACTGCTGCCGCGCCTGACGCCACCCGCCTTCTGACAGCGCCGCCGCCTGCCCCTGCCATG GGTCGACAGAAGGAGCTGGTGACCCGCTGCGGGGAGATGCTCCATATCCGCTACCGGCTG CTTCGCCAGGCACTGGCTGAGTGCCTGGGGACCCTTATCCTCGTGATGTTTGGCTGTGGC TCCGTGGCACAGGTCGTGCTCAGCCGGGGCACTCATGGTGGTTTCCTCACCATCAACCTG GCCTTTGGCTTCGCTGTCACCCTGGGTATCCTTGTTGCCGGCCAGGTCTCTGGGGCCCAC CTGAACCCTGCTGTGACCTTCGCTATGTGCTTCCTGGCCCGTGAACCCTGGATCAAGCTG CCCGTCTATACCCTGGCTCAGACTCTGGGAGCCTTCCTGGGTGCTGGGATCATTTTTGGG CTGTATTATGATGCAATCTGGGCCTTCGCCAACAACCAGCTTATAGTCTCAGGCCCCAAT GGCACAGCTGGCATCTTTGCCACCTACCCCTCTGGACACTTGGACATGGTCAATGGCTTC TTCGACCAGTTCATCGGCACAGCCTCCCTCATCGTGTGCGTGCTGGCCATTGTGGACCCC AACAACAACCCCGTGCCCCGTGGCCTGGAGGCCTTCACTGTGGGCCTGGTGGTCCTGGTC ATTGGCACCTCCATGGGCTTCAACTCTGGCTATGCCGTCAACCCTGCCCGGGACTTCGGC CCTCGCCTCTTCACTGCCATTGCTGGCTGGGGCTCAGAAGTCTTCACGACCGGCCGCCAC TGGTGGTGGGTGCCCATTGTCTCTCCGCTCCTGGGTTCCATCGCCGGTGTCTTCGTGTAC CAGCTCATGATCGGCTGCCACCTGGAGCCACCGCCACCCTCCACTGACGAGGAGAATGTG AAGCTGTCCCAAGTAAAGCACAAGGAGTAGATGCGAATGGGCAGGAGGCACCCCCCCCAC TGCCCCCTCCCTTGAGCATCCATTGACTGTGCGGGGGCTGCTCCCTTGAAGCCCCCTTGA AGCCCCCTTGCTGACTCCTCTCCCGGGTTAAGAAACTCCTACCGCCACCCCTCCAGACAG GCCCCTTGGAGATTTTCCATCCTGCCCCAACAGTCCACTGCACCTAAGCTGTGGTGAAAC AGGAAGTAGGGCCAAGATAGCCCTTTGTCTCCCAAAGAGAGAGAACGGGCAGCAGGTGGG TGAATGTGTGTGCATGTGCATGTGTGTGTGAGTTTTCCCAGATATTCATGGCACGGGACC ACGTGGAAAGGACTCTAGCTGTGGGTGAGGCCCAGAGGAAGGGGGAATGTGGTGTGTCCA CGTGTGAGGAAAGGCACTAGGGGCCTGAATTTTCAGGGGCTCCACGTGGAGGGGGGTCAA GGTACCTGTGTTTCTCAGTATGTGCCTGTCTGCCCTTCTTCCTCCGTGGGGGCTTCTATA GGCTTTGTAGGGAATGTGAGCAGGGCTGGGAGGAGGGGGTCACAGCCCAGGTGTGGAGCT CTGGCTATTCATAAAGTAGGAGCAGAGTGATGTGTTTCTGTCACAATGCAGGCATGAGGG GGGTGGGGTGACGTCCAGGTCATAAGTTTCATGTTTGCTCTTTTGAAAAAAAAAAATATA TATATAGCAGATGTTACAGTTTTAGGGATGGGGGTTGGGAGACTCTAAATAGGGTCTTCA TTCCTTTAATCCTCCACTCAATACATGTACTCTTTTGCCTTTTATAAAAAAAAAATAAAA TATATGCCAATTGTAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACTGCTGCCGCGCCTGACGCCACCCGCCTTCTGACAGCGCCGCCGCCTGCCCCTGCCATG GGTCGACAGAAGGAGCTGGTGACCCGCTGCGGGGAGATGCTCCATATCCGCTACCGGCTG CTTCGCCAGGCACTGGCTGAGTGCCTGGGGACCCTTATCCTCGTGATGTTTGGCTGTGGC TCCGTGGCACAGGTCGTGCTCAGCCGGGGCACTCATGGTGGTTTCCTCACCATCAACCTG GCCTTTGGCTTCGCTGTCACCCTGGGTATCCTTGTTGCCGGCCAGGTCTCTGGGGCCCAC CTGAACCCTGCTGTGACCTTCGCTATGTGCTTCCTGGCCCGTGAACCCTGGATCAAGCTG CCCGTCTATACCCTGGCTCAGACTCTGGGAGCCTTCCTGGGTGCTGGGATCATTTTTGGG CTGTATTATGATGCAATCTGGGCCTTCGCCAACAACCAGCTTATAGTCTCAGGCCCCAAT GGCACAGCTGGCATCTTTGCCACCTACCCCTCTGGACACTTGGACATGGTCAATGGCTTC TTCGACCAGTTCATCGGCACAGCCTCCCTCATCGTGTGCGTGCTGGCCATTGTGGACCCC AACAACAACCCCGTGCCCCGTGGCCTGGAGGCCTTCACTGTGGGCCTGGTGGTCCTGGTC ATTGGCACCTCCATGGGCTTCAACTCTGGCTATGCCGTCAACCCTGCCCGGGACTTCGGC CCTCGCCTCTTCACTGCCATTGCTGGCTGGGGCTCAGAAGTCTTCACGACCGGCCGCCAC TGGTGGTGGGTGCCCATTGTCTCTCCGCTCCTGGGTTCCATCGCCGGTGTCTTCGTGTAC CAGCTCATGATCGGCTGCCACCTGGAGCCACCGCCACCCTCCACTGACGAGGAGAATGTG AAGCTGTCCCAAGTAAAGCACAAGGAGTAGATGCGAATGGGCAGGAGGCACCCCCCCCAC TGCCCCCTCCCTTGAGCATCCATTGACTGTGCGGGGGCTGCTCCCTTGAAGCCCCCTTGA AGCCCCCTTGCTGACTCCTCTCCCGGGTTAAGAAACTCCTACCGCCACCCCTCCAGACAG GCCCCTTGGAGATTTTCCATCCTGCCCCAACAGTCCACTGCACCTAAGCTGTGGTGAAAC AGGAAGTAGGGCCAAGATAGCCCTTTGTCTCCCAAAGAGAGAGAACGGGCAGCAGGTGGG TGAATGTGTGTGCATGTGCATGTGTGTGTGAGTTTTCCCAGATATTCATGGCACGGGACC ACGTGGAAAGGACTCTAGCTGTGGGTGAGGCCCAGAGGAAGGGGGAATGTGGTGTGTCCA CGTGTGAGGAAAGGCACTAGGGGCCTGAATTTTCAGGGGCTCCACGTGGAGGGGGGTCAA GGTACCTGTGTTTCTCAGTATGTGCCTGTCTGCCCTTCTTCCTCCGTGGGGGCTTCTATA GGCTTTGTAGGGAATGTGAGCAGGGCTGGGAGGAGGGGGTCACAGCCCAGGTGTGGAGCT CTGGCTATTCATAAAGTAGGAGCAGAGTGATGTGTTTCTGTCACAATGCAGGCATGAGGG GGGTGGGGTGACGTCCAGGTCATAAGTTTCATGTTTGCTCTTTTGAAAAAAAAAAATATA TATATAGCAGATGTTACAGTTTTAGGGATGGGGGTTGGGAGACTCTAAATAGGGTCTTCA TTCCTTTAATCCTCCACTCAATACATGTACTCTTTTGCCTTTTATAAAAAAAAAATAAAA TATATGCCAATTGTAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 765-884, + strand, RNAz p=0.535551 | |
| 1143-1233, - strand, RNAz p=0.979576 | |
| 1337-1446, - strand, RNAz p=0.840006 | |
| 1618-1727, - strand, RNAz p=0.910323 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 765-884, + strand, RNAz p=0.535551 | |
| 1143-1233, - strand, RNAz p=0.979576 | |
| 1337-1446, - strand, RNAz p=0.840006 | |
| 1618-1727, - strand, RNAz p=0.910323 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_004925, + |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 2-174, gnl|bosTau2|chr8 (37948803-37948632) | |
| 2-174, gnl|Hg17|chr9 (33437583-33437412) | |
| 2-174, gnl|Mm7|chr4 (41236636-41236456) | |
| 292-433, gnl|bosTau2|chr8 (37944960-37944819) | |
| 292-433, gnl|Hg17|chr9 (33433457-33433316) | |
| 292-433, gnl|Mm7|chr4 (41233302-41233161) | |
| 546-715, gnl|bosTau2|chr8 (37944146-37943977) | |
| 546-715, gnl|canFam2|chr11 (53505323-53505469) | |
| 546-715, gnl|danRer3|chrNA (130301500-130301646) | |
| 546-715, gnl|dasNov1|scaffold_85399 (7029-6883) | |
| 546-715, gnl|echTel1|scaffold_124518 (847-701) | |
| 546-715, gnl|fr1|chrUn (156457269-156457383) | |
| 546-715, gnl|hg17|chr9 (33375701-33375847) | |
| 546-715, gnl|Hg17|chr9 (33432520-33432351) | |
| 546-715, gnl|loxAfr1|scaffold_211507 (73-219) | |
| 546-715, gnl|mm7|chr4 (41173271-41173417) | |
| 546-715, gnl|Mm7|chr4 (41232466-41232297) | |
| 546-715, gnl|monDom2|scaffold_83 (5196787-5196641) | |
| 546-715, gnl|oryCun1|scaffold_124574 (1012-866) | |
| 546-715, gnl|panTro1|chr11 (33875009-33875155) | |
| 546-715, gnl|rheMac2|chr15 (43840061-43839915) | |
| 546-715, gnl|rn3|chr5 (58434557-58434703) | |
| 546-715, gnl|tetNig1|chr11 (766383-766529) | |
| 765-1759, gnl|bosTau2|chr8 (40554748-40553738) | |
| 765-1759, gnl|Hg17|chr9 (33432212-33431142) | |
| 765-1759, gnl|Mm7|chr4 (41232168-41231185) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-174, gnl|bosTau2|chr8 (37948803-37948632) | |
| 2-174, gnl|Hg17|chr9 (33437583-33437412) | |
| 2-174, gnl|Mm7|chr4 (41236636-41236456) | |
| 292-433, gnl|bosTau2|chr8 (37944960-37944819) | |
| 292-433, gnl|Hg17|chr9 (33433457-33433316) | |
| 292-433, gnl|Mm7|chr4 (41233302-41233161) | |
| 546-715, gnl|bosTau2|chr8 (37944146-37943977) | |
| 546-715, gnl|canFam2|chr11 (53505323-53505469) | |
| 546-715, gnl|danRer3|chrNA (130301500-130301646) | |
| 546-715, gnl|dasNov1|scaffold_85399 (7029-6883) | |
| 546-715, gnl|echTel1|scaffold_124518 (847-701) | |
| 546-715, gnl|fr1|chrUn (156457269-156457383) | |
| 546-715, gnl|hg17|chr9 (33375701-33375847) | |
| 546-715, gnl|Hg17|chr9 (33432520-33432351) | |
| 546-715, gnl|loxAfr1|scaffold_211507 (73-219) | |
| 546-715, gnl|mm7|chr4 (41173271-41173417) | |
| 546-715, gnl|Mm7|chr4 (41232466-41232297) | |
| 546-715, gnl|monDom2|scaffold_83 (5196787-5196641) | |
| 546-715, gnl|oryCun1|scaffold_124574 (1012-866) | |
| 546-715, gnl|panTro1|chr11 (33875009-33875155) | |
| 546-715, gnl|rheMac2|chr15 (43840061-43839915) | |
| 546-715, gnl|rn3|chr5 (58434557-58434703) | |
| 546-715, gnl|tetNig1|chr11 (766383-766529) | |
| 765-1759, gnl|bosTau2|chr8 (40554748-40553738) | |
| 765-1759, gnl|Hg17|chr9 (33432212-33431142) | |
| 765-1759, gnl|Mm7|chr4 (41232168-41231185) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| ton (1.053) | |
| nep (0.919625) | |
| nmm (0.796813) | |
| clu (0.598229) | |
| cmu (0.55918) | |
| jej (0.494609) | |
| nlu (0.383362) | |
| eye (0.341006) | |
| cga (0.279096) | |
| tes (0.207814) | |
| fty (0.17584) | |
| nje (0.16592) | |
| cki (0.165235) | |
| eep (0.122564) | |
| med (0.116252) | |
| jca (0.11396) | |
| eje (0.0988338) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ton (1.053) | |
| nep (0.919625) | |
| nmm (0.796813) | |
| clu (0.598229) | |
| cmu (0.55918) | |
| jej (0.494609) | |
| nlu (0.383362) | |
| eye (0.341006) | |
| cga (0.279096) | |
| tes (0.207814) | |
| fty (0.17584) | |
| nje (0.16592) | |
| cki (0.165235) | |
| eep (0.122564) | |
| med (0.116252) | |
| jca (0.11396) | |
| eje (0.0988338) |