Ss1.1-Thy1-THY010033F04.5
|
TCACCCCCCCTCCTTTCCCCTTCAAGAAGCCGGCTCCGGGGCGCGCTCACCCCTGTGAGG
AGGCCGGAGACCGGACACCAGAGGCGCTCTCTCCACTCCCGGAAGATCATGTACCAGCCC
AGCCGGGGGGCGGCCCGGCGTCTCGGCTCCTGCCTCCGTGCCTATCAGGCTCGTCCCCAG
GACCAGCTTTCTCCAAGGGCTCTACCATTCCCACCCCTTTGGCCCCACTCCACCACAACC
ATTTCTCCATCTTTGCCTCTTCTCTGGTCTCCCCCACCGCCACGCCCTCCCACCCAGCCT
CTTCCCCGAGCTCCCTCACTACCCCTCCCTCAGGTCCAAGCCCTCACCTCACCATGGGTG
GTTCTCCCCCCAGGACAGGTGGAGGAGGGACCAGGACCCGAGTTACATAGCGGCTGCCTG
GATGGGCTTAGGAGCCTATTTGAGGGACCTCCCTTCCCCTGTCCTGGGGCTCTGATACCT
TTCCAAGCCCCTGGGACCGCCCACCCTTCCCCTGCCACTCCTTCAGGAGATCCAAGTATG
GAGGAGCACCTGGCTATCATGTATGAGAGACTGAGACAAGAGCTTCCCAATCTCTTCCTT
CACTCCCACGACTACACTCTCTACTCTTCAGATGTGGAATTCATCAATGAGATCCTGAAC
ATGCGTACCAAGGGCCGGACATGGTACATTCTGTCACTGACCCTCTGCCGCTTCCTGGCC
TGGAACTATTTTGCACAACTTCGGTTGGAAGTTCTACAGCTCACCCGCCACCCTGAGAAT
TGGACCCTGCAAGCCCGCTGGCGGCTTGTGGGGCTGCCCATCCACCTGCTCTTTCTGCGT
TTCTATAAGCGTGACAAGGAAGAGCTTTACCGGACCTATGATGCCTATTCCACCTTCTAC
CTGAATTCCAATGGCCTCATTTGTCGCCATCACCTAGACAAACTGATGCCCTCACACTCA
CCCCCAACGCCTGTGAAGAAGCTGCTAGTGGGAGCCCTGGTGGCTCTGGGGCTGTCGGAG
CCAGAACCCAATTTACACCTGTGTTCCAAGGACTGATTCAGGAACTGGGCAGAGGCAGCA
CTGATGACTTTGCTACGCACAAGAGCGGGAGCTGGAGGTGGCCAAGAACCTCAGGAGCCG
CCTTCCTCCTCTCTTCTTTCCTTTCCATCTCATGCTGTGTAAAGCTGCTATGTAATTTAA
CTTGTAAATAATAAAATCTAAGTGAATATACGAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TCACCCCCCCTCCTTTCCCCTTCAAGAAGCCGGCTCCGGGGCGCGCTCACCCCTGTGAGG
AGGCCGGAGACCGGACACCAGAGGCGCTCTCTCCACTCCCGGAAGATCATGTACCAGCCC
AGCCGGGGGGCGGCCCGGCGTCTCGGCTCCTGCCTCCGTGCCTATCAGGCTCGTCCCCAG
GACCAGCTTTCTCCAAGGGCTCTACCATTCCCACCCCTTTGGCCCCACTCCACCACAACC
ATTTCTCCATCTTTGCCTCTTCTCTGGTCTCCCCCACCGCCACGCCCTCCCACCCAGCCT
CTTCCCCGAGCTCCCTCACTACCCCTCCCTCAGGTCCAAGCCCTCACCTCACCATGGGTG
GTTCTCCCCCCAGGACAGGTGGAGGAGGGACCAGGACCCGAGTTACATAGCGGCTGCCTG
GATGGGCTTAGGAGCCTATTTGAGGGACCTCCCTTCCCCTGTCCTGGGGCTCTGATACCT
TTCCAAGCCCCTGGGACCGCCCACCCTTCCCCTGCCACTCCTTCAGGAGATCCAAGTATG
GAGGAGCACCTGGCTATCATGTATGAGAGACTGAGACAAGAGCTTCCCAATCTCTTCCTT
CACTCCCACGACTACACTCTCTACTCTTCAGATGTGGAATTCATCAATGAGATCCTGAAC
ATGCGTACCAAGGGCCGGACATGGTACATTCTGTCACTGACCCTCTGCCGCTTCCTGGCC
TGGAACTATTTTGCACAACTTCGGTTGGAAGTTCTACAGCTCACCCGCCACCCTGAGAAT
TGGACCCTGCAAGCCCGCTGGCGGCTTGTGGGGCTGCCCATCCACCTGCTCTTTCTGCGT
TTCTATAAGCGTGACAAGGAAGAGCTTTACCGGACCTATGATGCCTATTCCACCTTCTAC
CTGAATTCCAATGGCCTCATTTGTCGCCATCACCTAGACAAACTGATGCCCTCACACTCA
CCCCCAACGCCTGTGAAGAAGCTGCTAGTGGGAGCCCTGGTGGCTCTGGGGCTGTCGGAG
CCAGAACCCAATTTACACCTGTGTTCCAAGGACTGATTCAGGAACTGGGCAGAGGCAGCA
CTGATGACTTTGCTACGCACAAGAGCGGGAGCTGGAGGTGGCCAAGAACCTCAGGAGCCG
CCTTCCTCCTCTCTTCTTTCCTTTCCATCTCATGCTGTGTAAAGCTGCTATGTAATTTAA
CTTGTAAATAATAAAATCTAAGTGAATATACGAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
171-582, gnl|bosTau2|chr23 (20853400-20852989) |
|
171-582, gnl|Hg17|chr6 (30725304-30725715) |
|
171-582, gnl|Mm7|chr17 (34000256-33999845) |
| |
|
673-873, gnl|bosTau2|chr23 (20852445-20852245) |
|
673-873, gnl|canFam2|chr12 (3460398-3460626) |
|
673-873, gnl|echTel1|scaffold_315780 (66014-66221) |
|
673-873, gnl|fr1|chrUn (310347181-310347362) |
|
673-873, gnl|hg17|chr6 (30726999-30727232) |
|
673-873, gnl|Hg17|chr6 (30727023-30727223) |
|
673-873, gnl|loxAfr1|scaffold_118974 (4334-4108) |
|
673-873, gnl|mm7|chr17 (33999315-33999085) |
|
673-873, gnl|Mm7|chr17 (33999292-33999092) |
|
673-873, gnl|monDom2|scaffold_42 (18664022-18663801) |
|
673-873, gnl|oryCun1|scaffold_213280 (1947-1718) |
|
673-873, gnl|panTro1|chr5 (31188165-31188398) |
|
673-873, gnl|rheMac2|chr4 (30231696-30231929) |
|
673-873, gnl|rn3|chr20 (3008213-3008444) |
|
673-873, gnl|tetNig1|chrUn_random (87743873-87744105) |
| |
|
943-1233, gnl|bosTau2|chr23 (20851477-20851178) |
|
943-1233, gnl|Hg17|chr6 (30728558-30728858) |
|
943-1233, gnl|Mm7|chr17 (33997140-33996851) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
171-582, gnl|bosTau2|chr23 (20853400-20852989) |
|
171-582, gnl|Hg17|chr6 (30725304-30725715) |
|
171-582, gnl|Mm7|chr17 (34000256-33999845) |
| |
|
673-873, gnl|bosTau2|chr23 (20852445-20852245) |
|
673-873, gnl|canFam2|chr12 (3460398-3460626) |
|
673-873, gnl|echTel1|scaffold_315780 (66014-66221) |
|
673-873, gnl|fr1|chrUn (310347181-310347362) |
|
673-873, gnl|hg17|chr6 (30726999-30727232) |
|
673-873, gnl|Hg17|chr6 (30727023-30727223) |
|
673-873, gnl|loxAfr1|scaffold_118974 (4334-4108) |
|
673-873, gnl|mm7|chr17 (33999315-33999085) |
|
673-873, gnl|Mm7|chr17 (33999292-33999092) |
|
673-873, gnl|monDom2|scaffold_42 (18664022-18663801) |
|
673-873, gnl|oryCun1|scaffold_213280 (1947-1718) |
|
673-873, gnl|panTro1|chr5 (31188165-31188398) |
|
673-873, gnl|rheMac2|chr4 (30231696-30231929) |
|
673-873, gnl|rn3|chr20 (3008213-3008444) |
|
673-873, gnl|tetNig1|chrUn_random (87743873-87744105) |
| |
|
943-1233, gnl|bosTau2|chr23 (20851477-20851178) |
|
943-1233, gnl|Hg17|chr6 (30728558-30728858) |
|
943-1233, gnl|Mm7|chr17 (33997140-33996851) |
|
ebs (0.354904) |
|
ece (0.229305) |
|
eje (0.197668) |
|
nco (0.161734) |
|
pla (0.133672) |
|
cly (0.120642) |
|
ebs (0.354904) |
|
ece (0.229305) |
|
eje (0.197668) |
|
nco (0.161734) |
|
pla (0.133672) |
|
cly (0.120642) |
