Non-Coding RNA Search

Ss1.1-Thy1-THY010033F05.5

Sequence:


               
               GCTTGCTTACTCCAGGACCAGGTTAACTAAGGAGGCGGAGCTGAGACTGGGTCGGGACTG
CTTGCTTACTCCAGGACCAGGTTTAAATTTTTGAAATTGAAGTAGGTCCTCACATTAGGA
ACTCATGTCTTTTCTTGTAAGTAAACCAGAGCGAATTAGGACCAATGAGGCGAGCTCAGA
GTCGATAGCATCCTTCTCTAAACAGGAGATCATGAGTAGCTTCCTGCCAGAGGGAGGGTG
TTACGAGCTACTCACCGTTATAGGCAAAGGATTCGAGGACCTGATGACAGTGAACCTAGC
AAGGTACAAACCAACAGGAGAGTACGTGACGGTACGAAGGATTAACCTCGAAGCGTGTTC
CAATGAGATGGTGACGTTCTTGCAGGGGGAGCTCCATGTCTCTAAACTCTTCAGCCATCC
CAATATCCTGCCCTATCGAGCCACCTTTATCGCAGACAACGAGCTGTGGGTTGTCACATC
ATTCATGGCGTATGGCTCTGCAAAGGATCTCATCTGCACACACTTCATGGACGGCATGAA
CGAGCTGGCCATCGCGTACATCCTGCAGGGGGTGCTCAAGGCCCTGGACTACATCCACCA
CATGGGATATGTGCACAGGAGTGTCAAAGCCAGCCATGTTCTGATCTCTGCCGATGGGAA
GGTCTACCTGTCCGGTTTACGCAGCAACCTCAGCATGATCAGCCACGGGCAGCGGCAGCG
CGTAGTCCACGACTTTCCCAAGTACAGTATCAAGGTTCTGCCTTGGCTCAGCCCGGAGGT
CCTCCAGCAGAATCTTCAGGGTTATGATGCCAAGTCCGACATCTACAGCGTGGGAATCAC
AGCCTGTGAACTGGCCAATGGCCACGTCCCCTTTAAGGATATGCCTGCCACCCAGATGCT
GCTGGAGAAGCTGAACGGCACTGTGCCCTGTCTGCTGGACACCAGCACCATCCCCGCTGA
GGAACTGACCATGGGTGCCCCGCGCTCAGCGGCCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTTGCTTACTCCAGGACCAGGTTAACTAAGGAGGCGGAGCTGAGACTGGGTCGGGACTG
CTTGCTTACTCCAGGACCAGGTTTAAATTTTTGAAATTGAAGTAGGTCCTCACATTAGGA
ACTCATGTCTTTTCTTGTAAGTAAACCAGAGCGAATTAGGACCAATGAGGCGAGCTCAGA
GTCGATAGCATCCTTCTCTAAACAGGAGATCATGAGTAGCTTCCTGCCAGAGGGAGGGTG
TTACGAGCTACTCACCGTTATAGGCAAAGGATTCGAGGACCTGATGACAGTGAACCTAGC
AAGGTACAAACCAACAGGAGAGTACGTGACGGTACGAAGGATTAACCTCGAAGCGTGTTC
CAATGAGATGGTGACGTTCTTGCAGGGGGAGCTCCATGTCTCTAAACTCTTCAGCCATCC
CAATATCCTGCCCTATCGAGCCACCTTTATCGCAGACAACGAGCTGTGGGTTGTCACATC
ATTCATGGCGTATGGCTCTGCAAAGGATCTCATCTGCACACACTTCATGGACGGCATGAA
CGAGCTGGCCATCGCGTACATCCTGCAGGGGGTGCTCAAGGCCCTGGACTACATCCACCA
CATGGGATATGTGCACAGGAGTGTCAAAGCCAGCCATGTTCTGATCTCTGCCGATGGGAA
GGTCTACCTGTCCGGTTTACGCAGCAACCTCAGCATGATCAGCCACGGGCAGCGGCAGCG
CGTAGTCCACGACTTTCCCAAGTACAGTATCAAGGTTCTGCCTTGGCTCAGCCCGGAGGT
CCTCCAGCAGAATCTTCAGGGTTATGATGCCAAGTCCGACATCTACAGCGTGGGAATCAC
AGCCTGTGAACTGGCCAATGGCCACGTCCCCTTTAAGGATATGCCTGCCACCCAGATGCT
GCTGGAGAAGCTGAACGGCACTGTGCCCTGTCTGCTGGACACCAGCACCATCCCCGCTGA
GGAACTGACCATGGGTGCCCCGCGCTCAGCGGCCAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|27696780|gb|AAH43641.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|27696780|gb|AAH43641.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               160-636, gnl|bosTau2|chr13 (34334225-34334687)
               

               
               160-636, gnl|Hg17|chr17 (59145201-59138493)
               

               
               160-636, gnl|Mm7|chr11 (106282823-106277504)
               


               
               682-990, gnl|bosTau2|chr13 (34334706-34335005)
               

               
               682-990, gnl|Hg17|chr17 (59138447-59135576)
               

               
               682-990, gnl|Mm7|chr11 (106277489-106273908)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               160-636, gnl|bosTau2|chr13 (34334225-34334687)
               

               
               160-636, gnl|Hg17|chr17 (59145201-59138493)
               

               
               160-636, gnl|Mm7|chr11 (106282823-106277504)
               


               
               682-990, gnl|bosTau2|chr13 (34334706-34335005)
               

               
               682-990, gnl|Hg17|chr17 (59138447-59135576)
               

               
               682-990, gnl|Mm7|chr11 (106277489-106273908)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               ece (0.229305)
               

               
               cty (0.20816)
               

               
               cag (0.151194)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               cty (0.20816)
               

               
               cag (0.151194)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

	160-636, gnl\|bosTau2\|chr13 (34334225-34334687)
	160-636, gnl\|Hg17\|chr17 (59145201-59138493)
	160-636, gnl\|Mm7\|chr11 (106282823-106277504)

	682-990, gnl\|bosTau2\|chr13 (34334706-34335005)
	682-990, gnl\|Hg17\|chr17 (59138447-59135576)
	682-990, gnl\|Mm7\|chr11 (106277489-106273908)

	ece (0.229305)
	cty (0.20816)
	cag (0.151194)
	med (0.116252)
	eje (0.0988338)