Non-Coding RNA Search

Ss1.1-Thy1-THY010033H05.5

Sequence:


               
               GCAGGGGCAGGTCTCTCTAGCCTCGGCTCACGAAGGTCTGGAGGGCCTGAGTTCTCCTTT
GACTTGCTGCCCCCTCCCCCTCTCCCCAAAGCCTTGGTGTGCTCGGCTGTGTCACTACCC
CAGCTGTTGGTGCCTGTATCTGTTCTGGAGTGTGAAGAACTGAACCCTCCCTTTGATGCC
CAAAAGATTTTGTCTGGGGGCCACACTGTAGACCTGCCATATGAATTCCTTCTGCCCTGT
CTGTGCATTGAGGCATCCTATCTGCAAGAAGACACCGTGAGGCGTAAAAAATGTCCCTTC
CAGAACTGGCCTGAAGCCTACAGCTCGGACTTCTGGGAGTCAGTGAACTTTACTGACTAC
AGCCAGCACAGCCAGATGGTCATGGCCCCGACACTGCGTTGCCCACTGAAGCTAGAGGCC
TCCCTCTGCCAGAGGAAGGGCTGGCATACCCTCTGCGAAGACCTCCCCAACGCCACGGCT
CGAGAGTCGGAGGGGTGGTACATCTTGGAACAGGTGGACTTGCACCCCCAGCTCTGCTTC
AAGGTACAAGTGTGGGCAGCAGGGGGTCGGGAGGGCTATGCATGGTGCCTGGAGCTTGCT
GACCTGCCTGCCATCCTTGGATTTCTCAGTTCTCCTTTGGAAACAGCAGCCACGTTGAAT
GCCCCCACCAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGGGGCAGGTCTCTCTAGCCTCGGCTCACGAAGGTCTGGAGGGCCTGAGTTCTCCTTT
GACTTGCTGCCCCCTCCCCCTCTCCCCAAAGCCTTGGTGTGCTCGGCTGTGTCACTACCC
CAGCTGTTGGTGCCTGTATCTGTTCTGGAGTGTGAAGAACTGAACCCTCCCTTTGATGCC
CAAAAGATTTTGTCTGGGGGCCACACTGTAGACCTGCCATATGAATTCCTTCTGCCCTGT
CTGTGCATTGAGGCATCCTATCTGCAAGAAGACACCGTGAGGCGTAAAAAATGTCCCTTC
CAGAACTGGCCTGAAGCCTACAGCTCGGACTTCTGGGAGTCAGTGAACTTTACTGACTAC
AGCCAGCACAGCCAGATGGTCATGGCCCCGACACTGCGTTGCCCACTGAAGCTAGAGGCC
TCCCTCTGCCAGAGGAAGGGCTGGCATACCCTCTGCGAAGACCTCCCCAACGCCACGGCT
CGAGAGTCGGAGGGGTGGTACATCTTGGAACAGGTGGACTTGCACCCCCAGCTCTGCTTC
AAGGTACAAGTGTGGGCAGCAGGGGGTCGGGAGGGCTATGCATGGTGCCTGGAGCTTGCT
GACCTGCCTGCCATCCTTGGATTTCTCAGTTCTCCTTTGGAAACAGCAGCCACGTTGAAT
GCCCCCACCAGA

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               323-495, gnl|bosTau2|chr22 (12016947-12017119)
               

               
               323-495, gnl|canFam2|chr20 (11364720-11364411)
               

               
               323-495, gnl|echTel1|scaffold_325473 (87309-87607)
               

               
               323-495, gnl|hg17|chr3 (9927470-9927761)
               

               
               323-495, gnl|Hg17|chr3 (9927552-9927724)
               

               
               323-495, gnl|loxAfr1|scaffold_116713 (8015-8313)
               

               
               323-495, gnl|mm7|chr6 (113626567-113626860)
               

               
               323-495, gnl|Mm7|chr6 (113626647-113626819)
               

               
               323-495, gnl|monDom2|scaffold_5 (36680016-36680295)
               

               
               323-495, gnl|oryCun1|scaffold_209265 (1228-924)
               

               
               323-495, gnl|panTro1|chr2 (10301747-10302038)
               

               
               323-495, gnl|rheMac2|chr2 (51057600-51057309)
               

               
               323-495, gnl|rn3|chr4 (149600237-149600529)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               323-495, gnl|bosTau2|chr22 (12016947-12017119)
               

               
               323-495, gnl|canFam2|chr20 (11364720-11364411)
               

               
               323-495, gnl|echTel1|scaffold_325473 (87309-87607)
               

               
               323-495, gnl|hg17|chr3 (9927470-9927761)
               

               
               323-495, gnl|Hg17|chr3 (9927552-9927724)
               

               
               323-495, gnl|loxAfr1|scaffold_116713 (8015-8313)
               

               
               323-495, gnl|mm7|chr6 (113626567-113626860)
               

               
               323-495, gnl|Mm7|chr6 (113626647-113626819)
               

               
               323-495, gnl|monDom2|scaffold_5 (36680016-36680295)
               

               
               323-495, gnl|oryCun1|scaffold_209265 (1228-924)
               

               
               323-495, gnl|panTro1|chr2 (10301747-10302038)
               

               
               323-495, gnl|rheMac2|chr2 (51057600-51057309)
               

               
               323-495, gnl|rn3|chr4 (149600237-149600529)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	323-495, gnl\|bosTau2\|chr22 (12016947-12017119)
	323-495, gnl\|canFam2\|chr20 (11364720-11364411)
	323-495, gnl\|echTel1\|scaffold_325473 (87309-87607)
	323-495, gnl\|hg17\|chr3 (9927470-9927761)
	323-495, gnl\|Hg17\|chr3 (9927552-9927724)
	323-495, gnl\|loxAfr1\|scaffold_116713 (8015-8313)
	323-495, gnl\|mm7\|chr6 (113626567-113626860)
	323-495, gnl\|Mm7\|chr6 (113626647-113626819)
	323-495, gnl\|monDom2\|scaffold_5 (36680016-36680295)
	323-495, gnl\|oryCun1\|scaffold_209265 (1228-924)
	323-495, gnl\|panTro1\|chr2 (10301747-10302038)
	323-495, gnl\|rheMac2\|chr2 (51057600-51057309)
	323-495, gnl\|rn3\|chr4 (149600237-149600529)