Ss1.1-Thy1-THY010034A03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TACACATTAAGGAGGAACACCGAATGTGTAGGTTTCTGGGACTTTTTCATGGGGGCACAG AGATGAACAGAAAAAATGTTAGAATGTCAAAGTATGTGACAGGTGAGGGGGAGGCAGAGG CGAGAAAAGGGTATACTAGCCATAAGGCCAACACATTTGTGTTCAAAGATAAGTCTGGGC AAAGGAAAAAAAAAAAAAAAATCAAAAACCAAAACCCACCTCAAACAATACAACAAAACA AAACCCAAGTCAGAGGAAAAAAGTGTTTCATACAACACAGTATCAAAAAGTAAAAGGAAC ACACTAAATGCACAAACTTGTGGCAAGTCAGTCCACAGCCTATTATGATAGGTCCTTCCA GCATCAATCAGGTTTCTTCCCATCTGTTATCTCAAGGTTATTTACAGATGTGTGACTAGA ACAAGAGTCTCACAGGAGGGCGAGCAGGCTTCAATCATTGGTTTCAGGATCTGTCTGTGC CATGTAGGCATCCAACTCAGCATCCAAGTGTCCTTTAGTTTTCGACATGTATGCATCCAA TTGGTTGTCCAGCTGCTCCTTGGTCAGTACAGGGCGAGCAAGGGCACCTCTCCCTCGTCC ACGTCCACGGCCTCGGCCTCCAAAGCCCCCTCTTCCCCGGCCTATCATACCCCGACCTCT ACCACCGATTCCGCCACGACCCATAGCTCCACGCCCTAGGCCCCCTCTCCCAGGACCTCC ACGACCTCGAACACCACCTCTTCTTAAGCCCATTCGGGGAGCTACGGCTCGTCCACCTCG GAGCAGGTTTTGACCTCGGAGCGACATCCCGCCCCTAAGTAGGGTTCTTGTGGCACGTCC CCCACGTAGTCCTCCTCTGGGCAAGCCTCTCTGGATAATGGGCAGGCCTCGTCCTCCGAT TGCTCCCCTGGCCAGGGCCCCTATGGGTCGGCCTAACCGTGCCTGGATGTTACTCTTACC CAGGCGCTGCTTTAAGCTCTGCTTAAGTTTTAATGCTGCCTGGACAGAGGGTCTATTCTC CATCTGCTGGGCCAGTCTTCTGTTTCTGGCACTGGCTAGCTGCTGTTGTTGCTGCATCGA AGCCCGAATATTCACTGGCATCGGTTGTTTGTTCTTCAGCATATTAGTAAAGCGCTCATT TAGAGACATCTTGGTGGTGCTTTTTAGCACAACTTTCGGTGCTGACTGTGCAGCCATCTT CAAATCCCGAGAATCGAAGGAAACGGACGCCAGTGCTCCTCCCGGGGTTGCCACCACGGC TGCGACAGGCTGGCCGGGGGCCGGCCGAACCTGAGTTGACGGTGGAGGGGCTCGGATTAA CTTGGTGGGCGGTTGGTTGTATGTGTTAAACGGTAGAATGCTAGGTTAGTTCGTTGCTGC TGGGTGGCTGTCCGGTCGGCCGGTTCGCCTGCTCGCCCGGCGTGCCCTTTCCTGCCTTTC ACCACAGCCGCTGCCGCCAACTCCCGCTCGCTCTCCAAAACAAAATGGCCGCCACGCCCA GTGCGGAATGGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TACACATTAAGGAGGAACACCGAATGTGTAGGTTTCTGGGACTTTTTCATGGGGGCACAG AGATGAACAGAAAAAATGTTAGAATGTCAAAGTATGTGACAGGTGAGGGGGAGGCAGAGG CGAGAAAAGGGTATACTAGCCATAAGGCCAACACATTTGTGTTCAAAGATAAGTCTGGGC AAAGGAAAAAAAAAAAAAAAATCAAAAACCAAAACCCACCTCAAACAATACAACAAAACA AAACCCAAGTCAGAGGAAAAAAGTGTTTCATACAACACAGTATCAAAAAGTAAAAGGAAC ACACTAAATGCACAAACTTGTGGCAAGTCAGTCCACAGCCTATTATGATAGGTCCTTCCA GCATCAATCAGGTTTCTTCCCATCTGTTATCTCAAGGTTATTTACAGATGTGTGACTAGA ACAAGAGTCTCACAGGAGGGCGAGCAGGCTTCAATCATTGGTTTCAGGATCTGTCTGTGC CATGTAGGCATCCAACTCAGCATCCAAGTGTCCTTTAGTTTTCGACATGTATGCATCCAA TTGGTTGTCCAGCTGCTCCTTGGTCAGTACAGGGCGAGCAAGGGCACCTCTCCCTCGTCC ACGTCCACGGCCTCGGCCTCCAAAGCCCCCTCTTCCCCGGCCTATCATACCCCGACCTCT ACCACCGATTCCGCCACGACCCATAGCTCCACGCCCTAGGCCCCCTCTCCCAGGACCTCC ACGACCTCGAACACCACCTCTTCTTAAGCCCATTCGGGGAGCTACGGCTCGTCCACCTCG GAGCAGGTTTTGACCTCGGAGCGACATCCCGCCCCTAAGTAGGGTTCTTGTGGCACGTCC CCCACGTAGTCCTCCTCTGGGCAAGCCTCTCTGGATAATGGGCAGGCCTCGTCCTCCGAT TGCTCCCCTGGCCAGGGCCCCTATGGGTCGGCCTAACCGTGCCTGGATGTTACTCTTACC CAGGCGCTGCTTTAAGCTCTGCTTAAGTTTTAATGCTGCCTGGACAGAGGGTCTATTCTC CATCTGCTGGGCCAGTCTTCTGTTTCTGGCACTGGCTAGCTGCTGTTGTTGCTGCATCGA AGCCCGAATATTCACTGGCATCGGTTGTTTGTTCTTCAGCATATTAGTAAAGCGCTCATT TAGAGACATCTTGGTGGTGCTTTTTAGCACAACTTTCGGTGCTGACTGTGCAGCCATCTT CAAATCCCGAGAATCGAAGGAAACGGACGCCAGTGCTCCTCCCGGGGTTGCCACCACGGC TGCGACAGGCTGGCCGGGGGCCGGCCGAACCTGAGTTGACGGTGGAGGGGCTCGGATTAA CTTGGTGGGCGGTTGGTTGTATGTGTTAAACGGTAGAATGCTAGGTTAGTTCGTTGCTGC TGGGTGGCTGTCCGGTCGGCCGGTTCGCCTGCTCGCCCGGCGTGCCCTTTCCTGCCTTTC ACCACAGCCGCTGCCGCCAACTCCCGCTCGCTCTCCAAAACAAAATGGCCGCCACGCCCA GTGCGGAATGGA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 57 entry(ies) | More info |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
| 1-188, gnl|bosTau2|chr3 (11145379-11145563) | |
| 1-188, gnl|canFam2|chr7 (46396839-46396216) | |
| 1-188, gnl|canFam2|chr7 (46396404-46396970) | |
| 1-188, gnl|dasNov1|scaffold_268254 (698-1348) | |
| 1-188, gnl|dasNov1|scaffold_40691 (8932-8266) | |
| 1-188, gnl|echTel1|scaffold_275874 (3337-3930) | |
| 1-188, gnl|echTel1|scaffold_275874 (3767-3210) | |
| 1-188, gnl|hg17|chr1 (150431008-150431664) | |
| 1-188, gnl|Hg17|chr1 (150431254-150431062) | |
| 1-188, gnl|hg17|chr4 (182719347-182719946) | |
| 1-188, gnl|loxAfr1|scaffold_2219 (34844-35463) | |
| 1-188, gnl|loxAfr1|scaffold_2219 (35280-34717) | |
| 1-188, gnl|mm7|chr3 (90630837-90630242) | |
| 1-188, gnl|mm7|chr3 (90630443-90630982) | |
| 1-188, gnl|Mm7|chr3 (90630640-90630795) | |
| 1-188, gnl|monDom2|scaffold_59 (4444344-4443747) | |
| 1-188, gnl|monDom2|scaffold_59 (4443911-4444473) | |
| 1-188, gnl|oryCun1|scaffold_211043 (29919-29302) | |
| 1-188, gnl|oryCun1|scaffold_211043 (29505-30049) | |
| 1-188, gnl|panTro1|chr1 (132409644-132410301) | |
| 1-188, gnl|panTro1|chr3 (200977081-200977683) | |
| 1-188, gnl|rheMac2|chr1 (132161577-132162227) | |
| 1-188, gnl|rheMac2|chr5 (173536390-173536989) | |
| 1-188, gnl|rn3|chr2 (182723850-182723270) | |
| 1-188, gnl|rn3|chr2 (182723457-182723968) | |
| 216-658, gnl|bosTau2|chr3 (11145569-11146013) | |
| 216-658, gnl|Hg17|chr1 (150431056-150430611) | |
| 216-658, gnl|Mm7|chr3 (90630796-90631239) | |
| 791-983, gnl|bosTau2|chr3 (11148615-11148807) | |
| 791-983, gnl|canFam2|chr3 (26527166-26527005) | |
| 791-983, gnl|canFam2|chr7 (46399993-46399749) | |
| 791-983, gnl|danRer3|chr19 (28216092-28215913) | |
| 791-983, gnl|dasNov1|scaffold_40691 (12060-11816) | |
| 791-983, gnl|dasNov1|scaffold_54342 (6985-7196) | |
| 791-983, gnl|echTel1|scaffold_239281 (610-363) | |
| 791-983, gnl|echTel1|scaffold_292285 (42962-43155) | |
| 791-983, gnl|fr1|chrUn (152166237-152166019) | |
| 791-983, gnl|galGal2|chrUn (145273626-145273831) | |
| 791-983, gnl|hg17|chr1 (150427786-150428034) | |
| 791-983, gnl|Hg17|chr1 (150427982-150427790) | |
| 791-983, gnl|hg17|chr5 (83466767-83466953) | |
| 791-983, gnl|loxAfr1|scaffold_2219 (31649-31896) | |
| 791-983, gnl|loxAfr1|scaffold_2219 (31844-31651) | |
| 791-983, gnl|mm7|chr19 (11558060-11558274) | |
| 791-983, gnl|mm7|chr3 (90634420-90634170) | |
| 791-983, gnl|Mm7|chr3 (90634222-90634414) | |
| 791-983, gnl|monDom2|scaffold_59 (4447534-4447289) | |
| 791-983, gnl|oryCun1|scaffold_201053 (169504-169354) | |
| 791-983, gnl|oryCun1|scaffold_211043 (33104-32857) | |
| 791-983, gnl|panTro1|chr1 (132406421-132406669) | |
| 791-983, gnl|panTro1|chr4 (31692372-31692186) | |
| 791-983, gnl|rheMac2|chr1 (132158381-132158629) | |
| 791-983, gnl|rheMac2|chr6 (80328419-80328604) | |
| 791-983, gnl|rn3|chr2 (182727478-182727228) | |
| 791-983, gnl|rn3|chr4_random (1817680-1817466) | |
| 791-983, gnl|tetNig1|chrUn_random (109905746-109905925) | |
| 791-983, gnl|xenTro1|scaffold_3394 (12794-13006) |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-188, gnl|bosTau2|chr3 (11145379-11145563) | |
| 1-188, gnl|canFam2|chr7 (46396839-46396216) | |
| 1-188, gnl|canFam2|chr7 (46396404-46396970) | |
| 1-188, gnl|dasNov1|scaffold_268254 (698-1348) | |
| 1-188, gnl|dasNov1|scaffold_40691 (8932-8266) | |
| 1-188, gnl|echTel1|scaffold_275874 (3337-3930) | |
| 1-188, gnl|echTel1|scaffold_275874 (3767-3210) | |
| 1-188, gnl|hg17|chr1 (150431008-150431664) | |
| 1-188, gnl|Hg17|chr1 (150431254-150431062) | |
| 1-188, gnl|hg17|chr4 (182719347-182719946) | |
| 1-188, gnl|loxAfr1|scaffold_2219 (34844-35463) | |
| 1-188, gnl|loxAfr1|scaffold_2219 (35280-34717) | |
| 1-188, gnl|mm7|chr3 (90630837-90630242) | |
| 1-188, gnl|mm7|chr3 (90630443-90630982) | |
| 1-188, gnl|Mm7|chr3 (90630640-90630795) | |
| 1-188, gnl|monDom2|scaffold_59 (4444344-4443747) | |
| 1-188, gnl|monDom2|scaffold_59 (4443911-4444473) | |
| 1-188, gnl|oryCun1|scaffold_211043 (29919-29302) | |
| 1-188, gnl|oryCun1|scaffold_211043 (29505-30049) | |
| 1-188, gnl|panTro1|chr1 (132409644-132410301) | |
| 1-188, gnl|panTro1|chr3 (200977081-200977683) | |
| 1-188, gnl|rheMac2|chr1 (132161577-132162227) | |
| 1-188, gnl|rheMac2|chr5 (173536390-173536989) | |
| 1-188, gnl|rn3|chr2 (182723850-182723270) | |
| 1-188, gnl|rn3|chr2 (182723457-182723968) | |
| 216-658, gnl|bosTau2|chr3 (11145569-11146013) | |
| 216-658, gnl|Hg17|chr1 (150431056-150430611) | |
| 216-658, gnl|Mm7|chr3 (90630796-90631239) | |
| 791-983, gnl|bosTau2|chr3 (11148615-11148807) | |
| 791-983, gnl|canFam2|chr3 (26527166-26527005) | |
| 791-983, gnl|canFam2|chr7 (46399993-46399749) | |
| 791-983, gnl|danRer3|chr19 (28216092-28215913) | |
| 791-983, gnl|dasNov1|scaffold_40691 (12060-11816) | |
| 791-983, gnl|dasNov1|scaffold_54342 (6985-7196) | |
| 791-983, gnl|echTel1|scaffold_239281 (610-363) | |
| 791-983, gnl|echTel1|scaffold_292285 (42962-43155) | |
| 791-983, gnl|fr1|chrUn (152166237-152166019) | |
| 791-983, gnl|galGal2|chrUn (145273626-145273831) | |
| 791-983, gnl|hg17|chr1 (150427786-150428034) | |
| 791-983, gnl|Hg17|chr1 (150427982-150427790) | |
| 791-983, gnl|hg17|chr5 (83466767-83466953) | |
| 791-983, gnl|loxAfr1|scaffold_2219 (31649-31896) | |
| 791-983, gnl|loxAfr1|scaffold_2219 (31844-31651) | |
| 791-983, gnl|mm7|chr19 (11558060-11558274) | |
| 791-983, gnl|mm7|chr3 (90634420-90634170) | |
| 791-983, gnl|Mm7|chr3 (90634222-90634414) | |
| 791-983, gnl|monDom2|scaffold_59 (4447534-4447289) | |
| 791-983, gnl|oryCun1|scaffold_201053 (169504-169354) | |
| 791-983, gnl|oryCun1|scaffold_211043 (33104-32857) | |
| 791-983, gnl|panTro1|chr1 (132406421-132406669) | |
| 791-983, gnl|panTro1|chr4 (31692372-31692186) | |
| 791-983, gnl|rheMac2|chr1 (132158381-132158629) | |
| 791-983, gnl|rheMac2|chr6 (80328419-80328604) | |
| 791-983, gnl|rn3|chr2 (182727478-182727228) | |
| 791-983, gnl|rn3|chr4_random (1817680-1817466) | |
| 791-983, gnl|tetNig1|chrUn_random (109905746-109905925) | |
| 791-983, gnl|xenTro1|scaffold_3394 (12794-13006) |
| Expressed library(ies): 24 entry(ies) | More info |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
| che (0.408942) | |
| elu (0.385356) | |
| ill (0.351185) | |
| fhi (0.339155) | |
| cje (0.330469) | |
| sme (0.305437) | |
| spl (0.286369) | |
| ese (0.253004) | |
| mgp (0.230681) | |
| mas (0.210305) | |
| aor (0.195274) | |
| nlu (0.191681) | |
| cmu (0.186393) | |
| fbs (0.175346) | |
| cut (0.169924) | |
| lin (0.145603) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| ste (0.135208) | |
| nmm (0.132802) | |
| ova (0.129132) | |
| eru (0.120048) | |
| cty (0.10408) | |
| nbm (0.0993246) |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| che (0.408942) | |
| elu (0.385356) | |
| ill (0.351185) | |
| fhi (0.339155) | |
| cje (0.330469) | |
| sme (0.305437) | |
| spl (0.286369) | |
| ese (0.253004) | |
| mgp (0.230681) | |
| mas (0.210305) | |
| aor (0.195274) | |
| nlu (0.191681) | |
| cmu (0.186393) | |
| fbs (0.175346) | |
| cut (0.169924) | |
| lin (0.145603) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| ste (0.135208) | |
| nmm (0.132802) | |
| ova (0.129132) | |
| eru (0.120048) | |
| cty (0.10408) | |
| nbm (0.0993246) |