Non-Coding RNA Search

Ss1.1-Thy1-THY010034B02.5

Sequence:


               
               TTTTCGCTAGGTAGCAGCCTGCTCAGAGCTCATCAGAAGGCTTGTCCTCATCCCAGGCAG
ACAGCAAGCCAGCCCTCCCCCCAGACCCAGAGCTTCCCCAGGCCACCTTCTCCAGGAGCC
TCAGACACTGCTCTCCACTAAGCAAGCTTGCAGCTGGCCAACCATGGTCCCCACAGAAGC
CGCAAGTCTGATGCCTAATATGCCAGATGACTACGGCTATGACGCCACACCTTCCATAGA
AGACTACGGGAACTTCACCTTCACTGACCTCTTCTGCAAGAAAAACCATGTCAGGCAGTT
TGCAAGCCACTTCCTCCCGCCATTGTACTGGCTCGTGTTCATCGTGGGTGCCGTGGGCAA
CAGTTTGGTCATCCTTGTCTACTGGTACTGCACAAGGGTGAAGACCATGACTGACATGTT
CCTTCTGAATTTGGCAATCGCTGACCTTCTCTTTCTTGTCACCCTTCCTTTCTGGGCCAT
TGCCGCCGCTGACCAGTGGAAATTCCAGACCTTCATGTGCAAAGTGGTCAACAGCATGTA
CAAGATGAACTTCTACAGCTGTGTGCTGCTGATCATGTGCATCAGTGTGGACCGGTATAT
CGCCATTGCTCAGGCCATGAGGGCGCAGACTTGGAGGCAGAAGAGGCTTCTGTATAGCAA
GCTGGTTTGCTTTACTGTATGGGTGATGGCGGCTGCGCTCTGCATCCCAGAACTCCTGTA
CAGCCAAGTCAAGGAGGAACATGACATTGCTATCTGCACCATGGTTTACCCAAGTGACGA
GAGCACCAATCTGAAGTCGGCTGTCTTGACCCTGAAGGTCATCCTGGGGTTCTTCCTCCC
CTTTGTGGTCATGGCTTGCTGCTACACCATCATCATCCACACTCTGATACAAGCCAAGAA
GTCCTCCAAGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTCGCTAGGTAGCAGCCTGCTCAGAGCTCATCAGAAGGCTTGTCCTCATCCCAGGCAG
ACAGCAAGCCAGCCCTCCCCCCAGACCCAGAGCTTCCCCAGGCCACCTTCTCCAGGAGCC
TCAGACACTGCTCTCCACTAAGCAAGCTTGCAGCTGGCCAACCATGGTCCCCACAGAAGC
CGCAAGTCTGATGCCTAATATGCCAGATGACTACGGCTATGACGCCACACCTTCCATAGA
AGACTACGGGAACTTCACCTTCACTGACCTCTTCTGCAAGAAAAACCATGTCAGGCAGTT
TGCAAGCCACTTCCTCCCGCCATTGTACTGGCTCGTGTTCATCGTGGGTGCCGTGGGCAA
CAGTTTGGTCATCCTTGTCTACTGGTACTGCACAAGGGTGAAGACCATGACTGACATGTT
CCTTCTGAATTTGGCAATCGCTGACCTTCTCTTTCTTGTCACCCTTCCTTTCTGGGCCAT
TGCCGCCGCTGACCAGTGGAAATTCCAGACCTTCATGTGCAAAGTGGTCAACAGCATGTA
CAAGATGAACTTCTACAGCTGTGTGCTGCTGATCATGTGCATCAGTGTGGACCGGTATAT
CGCCATTGCTCAGGCCATGAGGGCGCAGACTTGGAGGCAGAAGAGGCTTCTGTATAGCAA
GCTGGTTTGCTTTACTGTATGGGTGATGGCGGCTGCGCTCTGCATCCCAGAACTCCTGTA
CAGCCAAGTCAAGGAGGAACATGACATTGCTATCTGCACCATGGTTTACCCAAGTGACGA
GAGCACCAATCTGAAGTCGGCTGTCTTGACCCTGAAGGTCATCCTGGGGTTCTTCCTCCC
CTTTGTGGTCATGGCTTGCTGCTACACCATCATCATCCACACTCTGATACAAGCCAAGAA
GTCCTCCAAGCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|48675913|ref|NP_001001624.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|48675913|ref|NP_001001624.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               424-837, + strand, RNAz p=0.990659

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               424-837, + strand, RNAz p=0.990659

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               185-912, gnl|bosTau2|chr22 (42122198-42121477)
               

               
               185-912, gnl|Hg17|chr3 (45917306-45918033)
               

               
               185-912, gnl|Mm7|chr9 (123497581-123498308)
               


               
               240-894, gnl|bosTau2|chr19 (34059209-34059861)
               

               
               240-894, gnl|Hg17|chr17 (35965551-35964899)
               

               
               240-894, gnl|Mm7|chr11 (99255028-99254376)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               185-912, gnl|bosTau2|chr22 (42122198-42121477)
               

               
               185-912, gnl|Hg17|chr3 (45917306-45918033)
               

               
               185-912, gnl|Mm7|chr9 (123497581-123498308)
               


               
               240-894, gnl|bosTau2|chr19 (34059209-34059861)
               

               
               240-894, gnl|Hg17|chr17 (35965551-35964899)
               

               
               240-894, gnl|Mm7|chr11 (99255028-99254376)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cje (0.165235)
               

               
               spl (0.143184)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.165235)
               

               
               spl (0.143184)

	185-912, gnl\|bosTau2\|chr22 (42122198-42121477)
	185-912, gnl\|Hg17\|chr3 (45917306-45918033)
	185-912, gnl\|Mm7\|chr9 (123497581-123498308)

	240-894, gnl\|bosTau2\|chr19 (34059209-34059861)
	240-894, gnl\|Hg17\|chr17 (35965551-35964899)
	240-894, gnl\|Mm7\|chr11 (99255028-99254376)