Ss1.1-Thy1-THY010034B03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGTCTGGGCACAGGCCCTGCTACCTGGCACCACTTCTGGTACCAGGTGGTGATCCCTGGG CATCCAGTGCCCTTCAGTGGCCTCATCTGGGTGGTGCTGGCCCCAGATGGGCAGGATGGG CATGAGGTGGCCAAGGAGGCTGTGTCTGCACGGCTTTTGGAGGCGCTGAGTGAATCTGGG GCCAGCCTCCTGCGGTCCGCTGTGGCTGAGGCAGGTACCATGGTTCAGCAGTGACCTCAT CCTCTCCGTAGGCAGCCTGAGCGAGTAGCAGAGCCTGTGTCAGTCCCTGGCCCAGCAGGC CTGGGCAGCCACCATCTGATCCCAAGAAGCGAGGAGCATGGGCCCTGCCCTGGGCCTGAC ACAGCCTCTTGGTTGGGACAGGGCCCCCATGCACCTCTGGGCAACTAGGTTTGACCAAGT TGTGGGGAGGGACTTCGCCTTCCCCTCCCAGCCCAGAGGCTGACCCCAAGATTGTTCTGT GTGTGACACATACACACCCACCCTCTGGCCTCTTCCCGAAGCTTAGCATGAATCTTTGCT TATTTTTTGTCTTTTCTGATGTTTTTATTTGGGGGCTGGCTGAGCCAAAGGGTCAGAAGC CTGCCTTGGCCCCTGCCACTTGGCATTCTGGTTTTGGTGTACGTGTAGCTTTTGAGTTTT CTGTGCTGGTTGTATTTATATTAAACCCCTGGTTGGTGTACACCTGCGTCTGTGCTGTCT TGCCCCAGCTGTGGGTTTGCCTTACACTGGTGGAGAGCAGCTGCTACAGGACAAGTATGT CCTCACATCACGGTGAGTCCTGAGCCTCTGCATCTTCAGGTTCTGCACAATAGGGTGTTT TAAGTTCCCAGCCTCTGGGGGTCGAGCCCAGGAAGCAGGAGCTGCCCCCTGAGAACCATC CTGAGATTCAGTCCATGCCCTCAGTCACTATCGTCCTCGCTCTCCTCCTCCTCCTGCACC GGAGCTGCGGCGTCCTCGCCCTCCTCCCTCAGTCCTGCAAAGAAGTCATCTGGGCTCCAG GCCTTGCTGCTCAGCGCCCGCAGCGGCCCTCCCTTCTTCTTGCGCCGGCGGTAGTCATCC ACCACCACTGCTCGCAGCTGGGCCATGTCCCAAAACTTGAGGCGCTGGTCATGGCCACTG CTGGCCAGGAAACGGCCACAGTGGGAGAGGGCCAGCTTCTCCACAGGCTCCCCGGCGTGC TGGCCCACGCTGCCCACCACTCGGTTTGGCAGGATGTGGACGGCCCTGATGACCCCGTCG GTAGAGCCAGCACACAGCAGACTCTCAGTCACTGGAACCATGCAGTCGATGGACTCTGCT CTCAGGGCAAAGCGGTCACTTGTGGCCCCAAAGCCATTCCAGTTGAAGAGGTAGATGGTA CCTTCGCTGGAGCCACAGACCACCTTCTTCCCACATTTCATGAGCGTGACGGAGGTCAGG TCTCCAGACTGAGGCTCGGAGAGCAGCTCAAACCGACGTCGCTTGATGTTGAAGACGCCG AGGCAGCCGTCTCCACTGGCTGTCAGCAGCAGCTTCTTGGCTGGATCCAGGGCCATGTCA GCGATGTACTCCTCGTGCTGCCGCATATCCATCAAGGGGCCTTCCTTCCGCTGGTCCCAG AGGCGAACGCCACCTGTGTCGTCCCCAGTGGCCAGAACATTCTCATCTACCAGCAGCAGA CTGTTGATGGGGGCACCGTGAGCCTTGGAAATGCGTCTTTCCAGTCGGCCCTGCTCCACA TCTAGAAAGTGGATGGCTTTGTCCTTGGAGACGGTAACGAGTTTCTGCCCATCCTCGGAG AAGACGACAGCACGGCAGGACTTGAGGTGGTGACCTGAGGACCAGAGCTCCTTGGTGTCT CCCTCTTGGCAGGAGTAGCGAAAGACGAACACGTCCCCGTCCACGTCCCCAGCCGCCAGG AGATCGCGGGCGGGATGGAACGCCAACCCACTGGCTGGAGCTTCCAGCACAATGTCTTCC GGAGTGTCCCGGATCCGGGCTGGGGCTTCCGTAGAGTCGGGGTCCTCCTCGTCGCTCACT TCGTCCGTGGGCTTCTCCTCACACGTGCGATCCATGAACCGGAGGATGCGAGCGGCGCAG CAACTGTCCAGTGAGCCCACAACAACTAGACACACGGCGGGAGGAGTGGCCCGGAGCACC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGTCTGGGCACAGGCCCTGCTACCTGGCACCACTTCTGGTACCAGGTGGTGATCCCTGGG CATCCAGTGCCCTTCAGTGGCCTCATCTGGGTGGTGCTGGCCCCAGATGGGCAGGATGGG CATGAGGTGGCCAAGGAGGCTGTGTCTGCACGGCTTTTGGAGGCGCTGAGTGAATCTGGG GCCAGCCTCCTGCGGTCCGCTGTGGCTGAGGCAGGTACCATGGTTCAGCAGTGACCTCAT CCTCTCCGTAGGCAGCCTGAGCGAGTAGCAGAGCCTGTGTCAGTCCCTGGCCCAGCAGGC CTGGGCAGCCACCATCTGATCCCAAGAAGCGAGGAGCATGGGCCCTGCCCTGGGCCTGAC ACAGCCTCTTGGTTGGGACAGGGCCCCCATGCACCTCTGGGCAACTAGGTTTGACCAAGT TGTGGGGAGGGACTTCGCCTTCCCCTCCCAGCCCAGAGGCTGACCCCAAGATTGTTCTGT GTGTGACACATACACACCCACCCTCTGGCCTCTTCCCGAAGCTTAGCATGAATCTTTGCT TATTTTTTGTCTTTTCTGATGTTTTTATTTGGGGGCTGGCTGAGCCAAAGGGTCAGAAGC CTGCCTTGGCCCCTGCCACTTGGCATTCTGGTTTTGGTGTACGTGTAGCTTTTGAGTTTT CTGTGCTGGTTGTATTTATATTAAACCCCTGGTTGGTGTACACCTGCGTCTGTGCTGTCT TGCCCCAGCTGTGGGTTTGCCTTACACTGGTGGAGAGCAGCTGCTACAGGACAAGTATGT CCTCACATCACGGTGAGTCCTGAGCCTCTGCATCTTCAGGTTCTGCACAATAGGGTGTTT TAAGTTCCCAGCCTCTGGGGGTCGAGCCCAGGAAGCAGGAGCTGCCCCCTGAGAACCATC CTGAGATTCAGTCCATGCCCTCAGTCACTATCGTCCTCGCTCTCCTCCTCCTCCTGCACC GGAGCTGCGGCGTCCTCGCCCTCCTCCCTCAGTCCTGCAAAGAAGTCATCTGGGCTCCAG GCCTTGCTGCTCAGCGCCCGCAGCGGCCCTCCCTTCTTCTTGCGCCGGCGGTAGTCATCC ACCACCACTGCTCGCAGCTGGGCCATGTCCCAAAACTTGAGGCGCTGGTCATGGCCACTG CTGGCCAGGAAACGGCCACAGTGGGAGAGGGCCAGCTTCTCCACAGGCTCCCCGGCGTGC TGGCCCACGCTGCCCACCACTCGGTTTGGCAGGATGTGGACGGCCCTGATGACCCCGTCG GTAGAGCCAGCACACAGCAGACTCTCAGTCACTGGAACCATGCAGTCGATGGACTCTGCT CTCAGGGCAAAGCGGTCACTTGTGGCCCCAAAGCCATTCCAGTTGAAGAGGTAGATGGTA CCTTCGCTGGAGCCACAGACCACCTTCTTCCCACATTTCATGAGCGTGACGGAGGTCAGG TCTCCAGACTGAGGCTCGGAGAGCAGCTCAAACCGACGTCGCTTGATGTTGAAGACGCCG AGGCAGCCGTCTCCACTGGCTGTCAGCAGCAGCTTCTTGGCTGGATCCAGGGCCATGTCA GCGATGTACTCCTCGTGCTGCCGCATATCCATCAAGGGGCCTTCCTTCCGCTGGTCCCAG AGGCGAACGCCACCTGTGTCGTCCCCAGTGGCCAGAACATTCTCATCTACCAGCAGCAGA CTGTTGATGGGGGCACCGTGAGCCTTGGAAATGCGTCTTTCCAGTCGGCCCTGCTCCACA TCTAGAAAGTGGATGGCTTTGTCCTTGGAGACGGTAACGAGTTTCTGCCCATCCTCGGAG AAGACGACAGCACGGCAGGACTTGAGGTGGTGACCTGAGGACCAGAGCTCCTTGGTGTCT CCCTCTTGGCAGGAGTAGCGAAAGACGAACACGTCCCCGTCCACGTCCCCAGCCGCCAGG AGATCGCGGGCGGGATGGAACGCCAACCCACTGGCTGGAGCTTCCAGCACAATGTCTTCC GGAGTGTCCCGGATCCGGGCTGGGGCTTCCGTAGAGTCGGGGTCCTCCTCGTCGCTCACT TCGTCCGTGGGCTTCTCCTCACACGTGCGATCCATGAACCGGAGGATGCGAGCGGCGCAG CAACTGTCCAGTGAGCCCACAACAACTAGACACACGGCGGGAGGAGTGGCCCGGAGCACC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 874-990, - strand, RNAz p=0.930771 | |
| 1031-1247, - strand, RNAz p=0.663998 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 874-990, - strand, RNAz p=0.930771 | |
| 1031-1247, - strand, RNAz p=0.663998 |
| Homologous human UTR: 2 entry(ies) | More info |
| Homologous human UTR: 2 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of BC068485, - | |
| 3' of BC068485, - |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 486-1247, gnl|bosTau2|chr7 (30484111-30484880) | |
| 486-1247, gnl|Hg17|chr5 (140030792-140029100) | |
| 486-1247, gnl|Mm7|chr18 (37140018-37139291) | |
| 1516-1696, gnl|bosTau2|chr7 (30485411-30485591) | |
| 1516-1696, gnl|Hg17|chr5 (140028560-140028380) | |
| 1516-1696, gnl|Mm7|chr18 (37138735-37138555) | |
| 1784-1884, gnl|bosTau2|chr7 (30485867-30485967) | |
| 1784-1884, gnl|canFam2|chr2 (38673268-38673379) | |
| 1784-1884, gnl|danRer3|chr21 (26736967-26736856) | |
| 1784-1884, gnl|dasNov1|scaffold_118263 (6874-6763) | |
| 1784-1884, gnl|echTel1|scaffold_241383 (7046-6935) | |
| 1784-1884, gnl|fr1|chrUn (307549175-307549275) | |
| 1784-1884, gnl|hg17|chr5 (140028002-140028113) | |
| 1784-1884, gnl|Hg17|chr5 (140028103-140028003) | |
| 1784-1884, gnl|loxAfr1|scaffold_26901 (7965-8076) | |
| 1784-1884, gnl|mm7|chr18 (37138177-37138294) | |
| 1784-1884, gnl|Mm7|chr18 (37138278-37138178) | |
| 1784-1884, gnl|monDom2|scaffold_6 (68136855-68136745) | |
| 1784-1884, gnl|oryCun1|scaffold_212741 (15696-15805) | |
| 1784-1884, gnl|panTro1|chr4 (146646481-146646592) | |
| 1784-1884, gnl|rheMac2|chr6 (137070622-137070733) | |
| 1784-1884, gnl|rn3|chr18 (29489641-29489752) | |
| 1784-1884, gnl|tetNig1|chrUn_random (65452101-65452001) | |
| 1784-1884, gnl|xenTro1|scaffold_648 (81990-82097) | |
| 1885-2160, gnl|bosTau2|chr7 (30488800-30489073) | |
| 1885-2160, gnl|Hg17|chr5 (140024872-140024598) | |
| 1885-2160, gnl|Mm7|chr18 (37136681-37136432) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 486-1247, gnl|bosTau2|chr7 (30484111-30484880) | |
| 486-1247, gnl|Hg17|chr5 (140030792-140029100) | |
| 486-1247, gnl|Mm7|chr18 (37140018-37139291) | |
| 1516-1696, gnl|bosTau2|chr7 (30485411-30485591) | |
| 1516-1696, gnl|Hg17|chr5 (140028560-140028380) | |
| 1516-1696, gnl|Mm7|chr18 (37138735-37138555) | |
| 1784-1884, gnl|bosTau2|chr7 (30485867-30485967) | |
| 1784-1884, gnl|canFam2|chr2 (38673268-38673379) | |
| 1784-1884, gnl|danRer3|chr21 (26736967-26736856) | |
| 1784-1884, gnl|dasNov1|scaffold_118263 (6874-6763) | |
| 1784-1884, gnl|echTel1|scaffold_241383 (7046-6935) | |
| 1784-1884, gnl|fr1|chrUn (307549175-307549275) | |
| 1784-1884, gnl|hg17|chr5 (140028002-140028113) | |
| 1784-1884, gnl|Hg17|chr5 (140028103-140028003) | |
| 1784-1884, gnl|loxAfr1|scaffold_26901 (7965-8076) | |
| 1784-1884, gnl|mm7|chr18 (37138177-37138294) | |
| 1784-1884, gnl|Mm7|chr18 (37138278-37138178) | |
| 1784-1884, gnl|monDom2|scaffold_6 (68136855-68136745) | |
| 1784-1884, gnl|oryCun1|scaffold_212741 (15696-15805) | |
| 1784-1884, gnl|panTro1|chr4 (146646481-146646592) | |
| 1784-1884, gnl|rheMac2|chr6 (137070622-137070733) | |
| 1784-1884, gnl|rn3|chr18 (29489641-29489752) | |
| 1784-1884, gnl|tetNig1|chrUn_random (65452101-65452001) | |
| 1784-1884, gnl|xenTro1|scaffold_648 (81990-82097) | |
| 1885-2160, gnl|bosTau2|chr7 (30488800-30489073) | |
| 1885-2160, gnl|Hg17|chr5 (140024872-140024598) | |
| 1885-2160, gnl|Mm7|chr18 (37136681-37136432) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| fce (0.271592) | |
| nco (0.161734) | |
| pty (0.142714) | |
| jca (0.11396) | |
| cty (0.10408) | |
| nbm (0.0993246) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fce (0.271592) | |
| nco (0.161734) | |
| pty (0.142714) | |
| jca (0.11396) | |
| cty (0.10408) | |
| nbm (0.0993246) |