Ss1.1-Thy1-THY010034C05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCAAACCCAAGGATGCCGCCGGAACGGAGGGGCCGAGCGAGACCGGACAGGACACCCGG AGTGAGACCGGGCCGGAAGACCCAAGTGAAGCCGGGCCGGAGAGCTGGACTGGGGCGGGC TGGGCCGCCCCGAAAGGCTGCTGCTTCATCCCAGCGGCAACCGCCGGCCCCGCCGGGAGC AGCGGCCGCTGCGATAGCAATCGCGGCGGAGGAGGAGAGACGGCTCCGGCAGCGGAATCG CTTGAGGCTGGAGGAGGACAAGCCGGCCGTGGAGCAGTGCCTGGAGGAGCTGGTCTTCGG CGATGTGTTGGACGACGAGGACGCGCTGCTGCGGCGTCTGCGGGGCCCGCGGGTTCAAGT ACAGGAAGACTCAGGCGACTCGGAAGTGGAGAATGAAGCAAAAGATAATTTTCCACCTCA AAAGAAGCCAGTTTGGCTGGATGAAGAAGATGAAGATGAGGAGATGGTCGACATGATGAA CAACCGTTTTCGGAAAGATATGATGAAAAATGCCAGTGAAAGTAAACTTTCCAAAGATGA GCTTCAAAAGAGACTTAAAGAAGAATTCCAGCATGCCATGGGGGGTGTGCCTGCCTGGGC AGAGACCAGTAGGCGGAAAACATCTTCGGATGATGAAAGTGAAGAGGATGAAGATGATTT GTTGCAAAGGACTGGGAATTTCATAGCCACATCAACCTCTCTTCCTAAAGGAATCTTGAA GATGAAGAACTGCCAACATGCTAATGCTGAACGTCCTACTACTGCTGAGATCTCATCTGT GCAGTTCCATCCTCGTGCACAGGTTGTGATGGTCGCGGGACTAGATAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCAAACCCAAGGATGCCGCCGGAACGGAGGGGCCGAGCGAGACCGGACAGGACACCCGG AGTGAGACCGGGCCGGAAGACCCAAGTGAAGCCGGGCCGGAGAGCTGGACTGGGGCGGGC TGGGCCGCCCCGAAAGGCTGCTGCTTCATCCCAGCGGCAACCGCCGGCCCCGCCGGGAGC AGCGGCCGCTGCGATAGCAATCGCGGCGGAGGAGGAGAGACGGCTCCGGCAGCGGAATCG CTTGAGGCTGGAGGAGGACAAGCCGGCCGTGGAGCAGTGCCTGGAGGAGCTGGTCTTCGG CGATGTGTTGGACGACGAGGACGCGCTGCTGCGGCGTCTGCGGGGCCCGCGGGTTCAAGT ACAGGAAGACTCAGGCGACTCGGAAGTGGAGAATGAAGCAAAAGATAATTTTCCACCTCA AAAGAAGCCAGTTTGGCTGGATGAAGAAGATGAAGATGAGGAGATGGTCGACATGATGAA CAACCGTTTTCGGAAAGATATGATGAAAAATGCCAGTGAAAGTAAACTTTCCAAAGATGA GCTTCAAAAGAGACTTAAAGAAGAATTCCAGCATGCCATGGGGGGTGTGCCTGCCTGGGC AGAGACCAGTAGGCGGAAAACATCTTCGGATGATGAAAGTGAAGAGGATGAAGATGATTT GTTGCAAAGGACTGGGAATTTCATAGCCACATCAACCTCTCTTCCTAAAGGAATCTTGAA GATGAAGAACTGCCAACATGCTAATGCTGAACGTCCTACTACTGCTGAGATCTCATCTGT GCAGTTCCATCCTCGTGCACAGGTTGTGATGGTCGCGGGACTAGATAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 139-249, - strand, RNAz p=0.814087 | |
| 207-304, - strand, RNAz p=0.894678 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 139-249, - strand, RNAz p=0.814087 | |
| 207-304, - strand, RNAz p=0.894678 |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 44-354, gnl|bosTau2|chr19 (28547742-28548052) | |
| 44-354, gnl|canFam2|chr9 (30402921-30403182) | |
| 44-354, gnl|dasNov1|scaffold_858 (91592-91826) | |
| 44-354, gnl|echTel1|scaffold_310655 (127766-128028) | |
| 44-354, gnl|galGal2|chr18 (4896998-4897197) | |
| 44-354, gnl|Hg17|chr17 (46692951-46693288) | |
| 44-354, gnl|hg17|chr18 (41862195-41862434) | |
| 44-354, gnl|loxAfr1|scaffold_29239 (37948-38209) | |
| 44-354, gnl|mm7|chr11 (93994698-93994452) | |
| 44-354, gnl|Mm7|chr11 (93994690-93994371) | |
| 44-354, gnl|oryCun1|scaffold_202963 (43195-42962) | |
| 44-354, gnl|panTro1|chr17 (38192608-38192847) | |
| 44-354, gnl|rheMac2|chr18 (39065913-39066140) | |
| 44-354, gnl|rn3|chr10 (82556999-82556765) | |
| 44-354, gnl|xenTro1|scaffold_1952 (33863-34106) | |
| 720-828, gnl|bosTau2|chr19 (28564100-28564208) | |
| 720-828, gnl|canFam2|chr9 (30418951-30419099) | |
| 720-828, gnl|dasNov1|scaffold_175483 (3110-2961) | |
| 720-828, gnl|echTel1|scaffold_185324 (7547-7397) | |
| 720-828, gnl|fr1|chrUn (306357347-306357197) | |
| 720-828, gnl|galGal2|chr18 (4899333-4899478) | |
| 720-828, gnl|hg17|chr17 (46708210-46708369) | |
| 720-828, gnl|Hg17|chr17 (46708224-46708332) | |
| 720-828, gnl|loxAfr1|scaffold_18004 (26496-26348) | |
| 720-828, gnl|mm7|chr11 (93985237-93985090) | |
| 720-828, gnl|Mm7|chr11 (93985221-93985113) | |
| 720-828, gnl|monDom2|scaffold_124 (2023825-2023666) | |
| 720-828, gnl|oryCun1|scaffold_124899 (15-165) | |
| 720-828, gnl|panTro1|chr19_random (32351320-32351479) | |
| 720-828, gnl|rheMac2|chr16 (35513041-35513200) | |
| 720-828, gnl|rn3|chr10 (82547452-82547304) | |
| 720-828, gnl|tetNig1|chrUn_random (46137875-46137742) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 44-354, gnl|bosTau2|chr19 (28547742-28548052) | |
| 44-354, gnl|canFam2|chr9 (30402921-30403182) | |
| 44-354, gnl|dasNov1|scaffold_858 (91592-91826) | |
| 44-354, gnl|echTel1|scaffold_310655 (127766-128028) | |
| 44-354, gnl|galGal2|chr18 (4896998-4897197) | |
| 44-354, gnl|Hg17|chr17 (46692951-46693288) | |
| 44-354, gnl|hg17|chr18 (41862195-41862434) | |
| 44-354, gnl|loxAfr1|scaffold_29239 (37948-38209) | |
| 44-354, gnl|mm7|chr11 (93994698-93994452) | |
| 44-354, gnl|Mm7|chr11 (93994690-93994371) | |
| 44-354, gnl|oryCun1|scaffold_202963 (43195-42962) | |
| 44-354, gnl|panTro1|chr17 (38192608-38192847) | |
| 44-354, gnl|rheMac2|chr18 (39065913-39066140) | |
| 44-354, gnl|rn3|chr10 (82556999-82556765) | |
| 44-354, gnl|xenTro1|scaffold_1952 (33863-34106) | |
| 720-828, gnl|bosTau2|chr19 (28564100-28564208) | |
| 720-828, gnl|canFam2|chr9 (30418951-30419099) | |
| 720-828, gnl|dasNov1|scaffold_175483 (3110-2961) | |
| 720-828, gnl|echTel1|scaffold_185324 (7547-7397) | |
| 720-828, gnl|fr1|chrUn (306357347-306357197) | |
| 720-828, gnl|galGal2|chr18 (4899333-4899478) | |
| 720-828, gnl|hg17|chr17 (46708210-46708369) | |
| 720-828, gnl|Hg17|chr17 (46708224-46708332) | |
| 720-828, gnl|loxAfr1|scaffold_18004 (26496-26348) | |
| 720-828, gnl|mm7|chr11 (93985237-93985090) | |
| 720-828, gnl|Mm7|chr11 (93985221-93985113) | |
| 720-828, gnl|monDom2|scaffold_124 (2023825-2023666) | |
| 720-828, gnl|oryCun1|scaffold_124899 (15-165) | |
| 720-828, gnl|panTro1|chr19_random (32351320-32351479) | |
| 720-828, gnl|rheMac2|chr16 (35513041-35513200) | |
| 720-828, gnl|rn3|chr10 (82547452-82547304) | |
| 720-828, gnl|tetNig1|chrUn_random (46137875-46137742) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.10408) |