Non-Coding RNA Search

Ss1.1-Thy1-THY010034D08.5

Sequence:


               
               AATCCACATTTCTGATCTGTACTTATTTTTCTCCTCCCACCTCCCTCTGGAATGGATATA
TTGGTTGGTTCATATAATGTAGGCACTTGCTGTATTTTTACTGGAGCTTGTAATTTTTTA
ACTGTAAGCTTGTCCTTTTAAAGGGATTTAATGTACCTTTTTGTTAGTGAATTTGGAAAT
AAAAAGAAAAAAAAAAACAAAAACAGCAGGCTGCCATAATATATTTTTTTAATTTGGCAG
GATAAAATATTGGCAAAAAAAAAATTTGTATGTTAAGTCCTATTGTACAGGAGAAAAAAA
AAAAAAAGGTTGTTTGACAACCTCTGAGGAAAAGAAACAAAAGGAAGTAGGTAAATGCTT
TGGTTCACAAATCATTTTAGTTGTATATATTTTTGTCGGAATTGGCCTCGACAAAGGACT
GTTGGAATAGATAGGGCTTCACTCTGAACGCCCCCAACCTTGCATCAAGGCTCCCTGGTG
TGGCCACAGCAGACCAGACGGGAAATTCTGTATTCGTGTTGAGTGGAAAAATCAGTTTTT
GTAAAGATGTCGGTAGCATTTCACTGTCCTCCCTTTCTCTCCGAGGCCATCGGTAAGGGT
GGCAGCTGTGGAGGAAGAGAGGCCAAAAGCATCTTCCTCCTCTGCTGTCACCACTGTGGC
GTCGCCACCGACACATCTCCCGCCCTTCAGAGCAGAAAGAAGTGCACACCGAGCTTTCTT
TAGTCCTTGAGAAAACATTAAACAGAAAAATGTAATAAAGGGAGCTGGCGTATCAGGCGC
AGGTGACGTGATCTGTGGCTGGGACCAGCGCAAATCAAATCGGAGTCCCTGTCACAACCA
GGACCTTATATTCCATGGAGAGGGTTGGCCTGTTGTCTTTCTTACCTGCTTTGCTGCTTT
TCTCTCTGAAACCTACATTCCGTCAGTTTCCGAATGCCTAGGGCCTGGGCTGAATTCGGT
GCCTTTCCATAGCTCTTTCTCTTTGCTTCTTCTGCATTTCCTCTCCATCCTCCAGCCTCT
GTCGGTCTTTGATTTGTCCTTTTCATTTTTATTTGATTTATTTCTCCCTTTCTGTCCCCC
CCCCCCTTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATCCACATTTCTGATCTGTACTTATTTTTCTCCTCCCACCTCCCTCTGGAATGGATATA
TTGGTTGGTTCATATAATGTAGGCACTTGCTGTATTTTTACTGGAGCTTGTAATTTTTTA
ACTGTAAGCTTGTCCTTTTAAAGGGATTTAATGTACCTTTTTGTTAGTGAATTTGGAAAT
AAAAAGAAAAAAAAAAACAAAAACAGCAGGCTGCCATAATATATTTTTTTAATTTGGCAG
GATAAAATATTGGCAAAAAAAAAATTTGTATGTTAAGTCCTATTGTACAGGAGAAAAAAA
AAAAAAAGGTTGTTTGACAACCTCTGAGGAAAAGAAACAAAAGGAAGTAGGTAAATGCTT
TGGTTCACAAATCATTTTAGTTGTATATATTTTTGTCGGAATTGGCCTCGACAAAGGACT
GTTGGAATAGATAGGGCTTCACTCTGAACGCCCCCAACCTTGCATCAAGGCTCCCTGGTG
TGGCCACAGCAGACCAGACGGGAAATTCTGTATTCGTGTTGAGTGGAAAAATCAGTTTTT
GTAAAGATGTCGGTAGCATTTCACTGTCCTCCCTTTCTCTCCGAGGCCATCGGTAAGGGT
GGCAGCTGTGGAGGAAGAGAGGCCAAAAGCATCTTCCTCCTCTGCTGTCACCACTGTGGC
GTCGCCACCGACACATCTCCCGCCCTTCAGAGCAGAAAGAAGTGCACACCGAGCTTTCTT
TAGTCCTTGAGAAAACATTAAACAGAAAAATGTAATAAAGGGAGCTGGCGTATCAGGCGC
AGGTGACGTGATCTGTGGCTGGGACCAGCGCAAATCAAATCGGAGTCCCTGTCACAACCA
GGACCTTATATTCCATGGAGAGGGTTGGCCTGTTGTCTTTCTTACCTGCTTTGCTGCTTT
TCTCTCTGAAACCTACATTCCGTCAGTTTCCGAATGCCTAGGGCCTGGGCTGAATTCGGT
GCCTTTCCATAGCTCTTTCTCTTTGCTTCTTCTGCATTTCCTCTCCATCCTCCAGCCTCT
GTCGGTCTTTGATTTGTCCTTTTCATTTTTATTTGATTTATTTCTCCCTTTCTGTCCCCC
CCCCCCTTTTTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               266-502, - strand, RNAz p=0.908746

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               266-502, - strand, RNAz p=0.908746

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-1087, gnl|bosTau2|chr21 (43822750-43821646)
               

               
               4-1087, gnl|Hg17|chr14 (98707700-98706619)
               

               
               4-1087, gnl|Mm7|chr12 (105434252-105433085)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-1087, gnl|bosTau2|chr21 (43822750-43821646)
               

               
               4-1087, gnl|Hg17|chr14 (98707700-98706619)
               

               
               4-1087, gnl|Mm7|chr12 (105434252-105433085)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fty (0.17584)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               ecc (0.115035)

	4-1087, gnl\|bosTau2\|chr21 (43822750-43821646)
	4-1087, gnl\|Hg17\|chr14 (98707700-98706619)
	4-1087, gnl\|Mm7\|chr12 (105434252-105433085)