Ss1.1-Thy1-THY010034F06.5
|
CTTTTAAAAGTGCAGCCCGGAGGCCCGCCCGCAGCCGCCCGCACTTCGCTCCGCAGCCCA
GTCCCGTGTGTCTCGGCCGCAAGCGCCCTCGTCCCGCACCCGTCCGGCCCAGGCCAGTCT
AGCCCGCACCATGCCGGTCAAAGGAGGCACTAAGTGTATCAAATACTTGCTCTTCGGATT
TAACTTCATCTTCTGGCTCGCTGGGATTGCGGTCCTTGCCATTGGACTATGGCTCCGATT
TGACTCTCAGACCAAGAGCATCTTCGAGCAAGAAAATAATAACTCTAGCTTCTACACAGG
AGTTTATATTCTCATTGGAGCCGGCGCCCTCATGATGGTGGTGGGCTTCCTGGGCTGCTG
CGGGGCCGTGCAGGAGTCCCAGTGCATGCTGGGCTTGTTCTTTGGCTTCCTCTTGGTGAT
ATTTGCCATTGAAATAGCCGCGGCCATCTGGGGATATTCCCACAAGGATCAGGTGATCAA
AGAAGTCCAGGATTTCTACAGGGACACTTACAACAAGCTGAAGGGCAAGGACGACCCCCA
GCGGGAGACTCTGAAAGCCATCCACTATGCGCTGGACTGCTGTGGTTTAATGGGGGGAGT
GGAACAACTTCTGGCAGACATCTGCCCCCAAAAGGACGTACTCTCAAGCCTCCCAATGAA
GCCCTGCCCTGAGGCCATCAAAGAGGTCTTCCAAAACAAGTTCCACATCATTGGCGCCGT
GGGCATTGGGATCGCCGTGGTGATGATTTTCGGCATGATCTTCAGCATGATCCTGTGCTG
TGCCATCCGTCGGAGCCGAGAGATGGTCTAGAGTCAGCCTCGCAGCCCTGAGCAGGAAAG
TCCACCCCTGAAGACTATTGGTCATCTTCTCGGGGTCCTGTTTGTATTTCTTTTGGTTTT
CTTTGCCACTAACTTTAGTATTCAGTCTGCATTTCTAAACAAAACAAAAAAAAAGTTATT
CTATGTTTATGTTTGTAATGCTTTATTCAATATTGATATTTGTAGTTAAGGGGTTTGGGT
TTGCTCGGGTTTATATTTGTTTGGTCATTTGTTTTTGCTTATTATGTAAAGCAGAAATCC
TGCAATGAAAGGTACTATATTTGCTAGACTCTAGACAAAAGATATTGTATATAAAGAGTT
TTTTTTCTTTAAATAGATAAAAAAATGTCTATCAAATTTAATCAGGTTGTAACTTATGTT
AAAGACAATTTGATACATAATAAAAGATGATGACAACGTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CTTTTAAAAGTGCAGCCCGGAGGCCCGCCCGCAGCCGCCCGCACTTCGCTCCGCAGCCCA
GTCCCGTGTGTCTCGGCCGCAAGCGCCCTCGTCCCGCACCCGTCCGGCCCAGGCCAGTCT
AGCCCGCACCATGCCGGTCAAAGGAGGCACTAAGTGTATCAAATACTTGCTCTTCGGATT
TAACTTCATCTTCTGGCTCGCTGGGATTGCGGTCCTTGCCATTGGACTATGGCTCCGATT
TGACTCTCAGACCAAGAGCATCTTCGAGCAAGAAAATAATAACTCTAGCTTCTACACAGG
AGTTTATATTCTCATTGGAGCCGGCGCCCTCATGATGGTGGTGGGCTTCCTGGGCTGCTG
CGGGGCCGTGCAGGAGTCCCAGTGCATGCTGGGCTTGTTCTTTGGCTTCCTCTTGGTGAT
ATTTGCCATTGAAATAGCCGCGGCCATCTGGGGATATTCCCACAAGGATCAGGTGATCAA
AGAAGTCCAGGATTTCTACAGGGACACTTACAACAAGCTGAAGGGCAAGGACGACCCCCA
GCGGGAGACTCTGAAAGCCATCCACTATGCGCTGGACTGCTGTGGTTTAATGGGGGGAGT
GGAACAACTTCTGGCAGACATCTGCCCCCAAAAGGACGTACTCTCAAGCCTCCCAATGAA
GCCCTGCCCTGAGGCCATCAAAGAGGTCTTCCAAAACAAGTTCCACATCATTGGCGCCGT
GGGCATTGGGATCGCCGTGGTGATGATTTTCGGCATGATCTTCAGCATGATCCTGTGCTG
TGCCATCCGTCGGAGCCGAGAGATGGTCTAGAGTCAGCCTCGCAGCCCTGAGCAGGAAAG
TCCACCCCTGAAGACTATTGGTCATCTTCTCGGGGTCCTGTTTGTATTTCTTTTGGTTTT
CTTTGCCACTAACTTTAGTATTCAGTCTGCATTTCTAAACAAAACAAAAAAAAAGTTATT
CTATGTTTATGTTTGTAATGCTTTATTCAATATTGATATTTGTAGTTAAGGGGTTTGGGT
TTGCTCGGGTTTATATTTGTTTGGTCATTTGTTTTTGCTTATTATGTAAAGCAGAAATCC
TGCAATGAAAGGTACTATATTTGCTAGACTCTAGACAAAAGATATTGTATATAAAGAGTT
TTTTTTCTTTAAATAGATAAAAAAATGTCTATCAAATTTAATCAGGTTGTAACTTATGTT
AAAGACAATTTGATACATAATAAAAGATGATGACAACGTCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
2-210, gnl|bosTau2|chr5 (60966928-60966721) |
|
2-210, gnl|Hg17|chr12 (6179797-6180010) |
|
2-210, gnl|Mm7|chr6 (125517536-125517337) |
| |
|
297-397, gnl|bosTau2|chr5 (60936671-60936571) |
|
297-397, gnl|canFam2|chr27 (41778015-41777897) |
|
297-397, gnl|danRer3|chr19 (18443279-18443387) |
|
297-397, gnl|dasNov1|scaffold_5642 (32569-32695) |
|
297-397, gnl|echTel1|scaffold_235081 (11184-11061) |
|
297-397, gnl|fr1|chrUn (221508731-221508853) |
|
297-397, gnl|hg17|chr12 (6212053-6212176) |
|
297-397, gnl|Hg17|chr12 (6212056-6212156) |
|
297-397, gnl|loxAfr1|scaffold_180527 (63-172) |
|
297-397, gnl|mm7|chr6 (125486461-125486339) |
|
297-397, gnl|Mm7|chr6 (125486456-125486356) |
|
297-397, gnl|monDom2|scaffold_31 (14586162-14586288) |
|
297-397, gnl|oryCun1|scaffold_178302 (181463-181341) |
|
297-397, gnl|panTro1|chr10 (6725748-6725871) |
|
297-397, gnl|rheMac2|chr11 (6343108-6343231) |
|
297-397, gnl|rn3|chr4 (162528306-162528182) |
|
297-397, gnl|tetNig1|chr19 (1221541-1221431) |
| |
|
745-1237, gnl|bosTau2|chr5 (60932314-60931805) |
|
745-1237, gnl|Hg17|chr12 (6217189-6217685) |
|
745-1237, gnl|Mm7|chr6 (125482693-125482233) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
2-210, gnl|bosTau2|chr5 (60966928-60966721) |
|
2-210, gnl|Hg17|chr12 (6179797-6180010) |
|
2-210, gnl|Mm7|chr6 (125517536-125517337) |
| |
|
297-397, gnl|bosTau2|chr5 (60936671-60936571) |
|
297-397, gnl|canFam2|chr27 (41778015-41777897) |
|
297-397, gnl|danRer3|chr19 (18443279-18443387) |
|
297-397, gnl|dasNov1|scaffold_5642 (32569-32695) |
|
297-397, gnl|echTel1|scaffold_235081 (11184-11061) |
|
297-397, gnl|fr1|chrUn (221508731-221508853) |
|
297-397, gnl|hg17|chr12 (6212053-6212176) |
|
297-397, gnl|Hg17|chr12 (6212056-6212156) |
|
297-397, gnl|loxAfr1|scaffold_180527 (63-172) |
|
297-397, gnl|mm7|chr6 (125486461-125486339) |
|
297-397, gnl|Mm7|chr6 (125486456-125486356) |
|
297-397, gnl|monDom2|scaffold_31 (14586162-14586288) |
|
297-397, gnl|oryCun1|scaffold_178302 (181463-181341) |
|
297-397, gnl|panTro1|chr10 (6725748-6725871) |
|
297-397, gnl|rheMac2|chr11 (6343108-6343231) |
|
297-397, gnl|rn3|chr4 (162528306-162528182) |
|
297-397, gnl|tetNig1|chr19 (1221541-1221431) |
| |
|
745-1237, gnl|bosTau2|chr5 (60932314-60931805) |
|
745-1237, gnl|Hg17|chr12 (6217189-6217685) |
|
745-1237, gnl|Mm7|chr6 (125482693-125482233) |
|
cut (3.05862) |
|
csk (2.11119) |
|
cmu (1.86393) |
|
fbs (1.75346) |
|
jca (1.59544) |
|
pro (1.5361) |
|
spc (1.47376) |
|
liv (1.31656) |
|
bla (1.24347) |
|
cst (1.12029) |
|
gul (1.06553) |
|
lyg (1.06482) |
|
hyp (0.999857) |
|
amn (0.835422) |
|
ova (0.774793) |
|
ski (0.733676) |
|
cbe (0.717703) |
|
rec (0.692281) |
|
pla (0.66836) |
|
cki (0.660939) |
|
sug (0.636456) |
|
sme (0.610874) |
|
fat (0.58971) |
|
col (0.585023) |
|
nlu (0.575043) |
|
spl (0.572738) |
|
cga (0.558191) |
|
nep (0.551775) |
|
sag (0.548145) |
|
ssp (0.542079) |
|
fty (0.527519) |
|
ton (0.526501) |
|
mcp (0.511945) |
|
fhi (0.508733) |
|
cje (0.495704) |
|
tra (0.492368) |
|
nco (0.485201) |
|
ldo (0.485013) |
|
pgl (0.473934) |
|
nmm (0.398406) |
|
ute (0.398353) |
|
nbm (0.397298) |
|
aor (0.390549) |
|
cly (0.361925) |
|
eru (0.360144) |
|
vin (0.332557) |
|
fco (0.314416) |
|
cty (0.31224) |
|
tbr (0.308356) |
|
isp (0.300752) |
|
eje (0.296501) |
|
pty (0.285429) |
|
lnt (0.284616) |
|
che (0.272628) |
|
ste (0.270416) |
|
kid (0.259471) |
|
mgp (0.230681) |
|
nms (0.213858) |
|
hea (0.204499) |
|
jej (0.197844) |
|
fcc (0.197785) |
|
sto (0.179824) |
|
sin (0.174948) |
|
nje (0.16592) |
|
csp (0.161186) |
|
lin (0.145603) |
|
hlv (0.139256) |
|
nca (0.136874) |
|
ret (0.128733) |
|
thg (0.126791) |
|
eep (0.122564) |
|
ebs (0.118301) |
|
med (0.116252) |
|
cut (3.05862) |
|
csk (2.11119) |
|
cmu (1.86393) |
|
fbs (1.75346) |
|
jca (1.59544) |
|
pro (1.5361) |
|
spc (1.47376) |
|
liv (1.31656) |
|
bla (1.24347) |
|
cst (1.12029) |
|
gul (1.06553) |
|
lyg (1.06482) |
|
hyp (0.999857) |
|
amn (0.835422) |
|
ova (0.774793) |
|
ski (0.733676) |
|
cbe (0.717703) |
|
rec (0.692281) |
|
pla (0.66836) |
|
cki (0.660939) |
|
sug (0.636456) |
|
sme (0.610874) |
|
fat (0.58971) |
|
col (0.585023) |
|
nlu (0.575043) |
|
spl (0.572738) |
|
cga (0.558191) |
|
nep (0.551775) |
|
sag (0.548145) |
|
ssp (0.542079) |
|
fty (0.527519) |
|
ton (0.526501) |
|
mcp (0.511945) |
|
fhi (0.508733) |
|
cje (0.495704) |
|
tra (0.492368) |
|
nco (0.485201) |
|
ldo (0.485013) |
|
pgl (0.473934) |
|
nmm (0.398406) |
|
ute (0.398353) |
|
nbm (0.397298) |
|
aor (0.390549) |
|
cly (0.361925) |
|
eru (0.360144) |
|
vin (0.332557) |
|
fco (0.314416) |
|
cty (0.31224) |
|
tbr (0.308356) |
|
isp (0.300752) |
|
eje (0.296501) |
|
pty (0.285429) |
|
lnt (0.284616) |
|
che (0.272628) |
|
ste (0.270416) |
|
kid (0.259471) |
|
mgp (0.230681) |
|
nms (0.213858) |
|
hea (0.204499) |
|
jej (0.197844) |
|
fcc (0.197785) |
|
sto (0.179824) |
|
sin (0.174948) |
|
nje (0.16592) |
|
csp (0.161186) |
|
lin (0.145603) |
|
hlv (0.139256) |
|
nca (0.136874) |
|
ret (0.128733) |
|
thg (0.126791) |
|
eep (0.122564) |
|
ebs (0.118301) |
|
med (0.116252) |
