Ss1.1-Thy1-THY010034F11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCTGCCGGCAAAGGGTGGCAGAGTAGCCTGCAAACATCGGCGGCGAGTGGGGATGGCGG CAGTGGCAGCGGCAGCGGCGGTTGCTGTGGGACGGCTACTGCGGCTCCGGGTGGCCCGGG TGGAGGGACACTGGCATCCCCTGAGTGGCGGGGGGCTGCTGCGGGGCTTCCTGCAACCTG CCTCAGCCGACGGGGATGCGGCCCAGAAGCGGCAGGTGGCTCACTTCACTTTCCAGCCCG ACCCGGAGACCGTGGAGTACGGGCAAACTCAGAAAATGAATCTCTTCCAGGCAGTAACAA GTGCCTTGGATAACTCATTGGCCAAAGATCCTACTGCAGTAATATTTGGTGAAGATGTGG CCTTTGGTGGAGTCTTTAGATGTACTGTTGGCTTGCGAGACAAGTATGGTAAAGATAGAG TTTTTAATACCCCACTGTGTGAACAGGGAATTGTTGGATTTGGAATCGGGATTGCAGTCA CTGGTGCTACTGCCATTGCGGAAATTCAGTTTGCAGATTATATTTTCCCTGCTTTTGATC AGATAGTTAATGAAGCTGCCAAGTATCGTTATCGCTCTGGGGATCTCTTTAATTGTGGCA GCCTCACGATCCGGTCCCCTTGGGGCTGTGTCGGCCATGGGGCTCTCTATCATTCCCAGA GTCCTGAAGCATTCTTTGCCCACTGCCCAGGAATCAAGGTGGTTGTACCCAGAAGCCCTT TCCAAGCTAAGGGACTTCTCTTGTCATGCATAGAGGATAAAAATCCTTGTATATTTTTTG AACCTAAAATACTTTACAGAGCAGCAGTGGAACAGGTTCCCATAGAACCATACACTATCC CTCTGTCCCAGGCCGAAGTCATCCAAGAAGGGAGTGATGTGACTCTTGTTGCCTGGGGCA CTCAGGTTCATGTGATCCGAGAGGTTGCTTCCATGGCTCGGGAGAAGCTTGGAGTGTCCT GTGAGGTCATTGATCTGAGGACTATAATTCCTTGGGATGTAGATACAGTTTGTAAGTCTG TGATCAAAACAGGGCGACTGCTAGTTAGTCACGAGGCTCCCTTGACAGGCGGCTTTGCCT CGGAGATCAGCTCAACGGTTCAGGAAGAATGTTTCCTGAACCTTGAAGCTCCTATATCCA GAGTTTGTGGGTATGACACGCCATTCCCTCACATTTTTGAGCCGTTCTATATCCCAGACA AATGGAAATGCTATGATGCCCTTCGCAAAATGATCAACTATTGACCAGGGAGAAAAACTT GAAGATTGTGACTAGATACTGAAATATTTTTCTGATTTTTTTTTCTATATTTCCTCTTCT TGAAAATGGAGTTTTTATGAAATGAACCATCTTGGATATTGGTTGAAAAATTATGAATTA CTGTATTAAGACATGTAAATTGATCATTTCCATTAAGAGTATTTCAGAGTAATTTTTTAA ATGTTCCACATGGTAGGCTTATAAATTCTACTTAATTGCATCTGTACATATTGGCTGTGG GATAGTGTTCAATAAAGGAAAATCAGATTGTCTTCAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCTGCCGGCAAAGGGTGGCAGAGTAGCCTGCAAACATCGGCGGCGAGTGGGGATGGCGG CAGTGGCAGCGGCAGCGGCGGTTGCTGTGGGACGGCTACTGCGGCTCCGGGTGGCCCGGG TGGAGGGACACTGGCATCCCCTGAGTGGCGGGGGGCTGCTGCGGGGCTTCCTGCAACCTG CCTCAGCCGACGGGGATGCGGCCCAGAAGCGGCAGGTGGCTCACTTCACTTTCCAGCCCG ACCCGGAGACCGTGGAGTACGGGCAAACTCAGAAAATGAATCTCTTCCAGGCAGTAACAA GTGCCTTGGATAACTCATTGGCCAAAGATCCTACTGCAGTAATATTTGGTGAAGATGTGG CCTTTGGTGGAGTCTTTAGATGTACTGTTGGCTTGCGAGACAAGTATGGTAAAGATAGAG TTTTTAATACCCCACTGTGTGAACAGGGAATTGTTGGATTTGGAATCGGGATTGCAGTCA CTGGTGCTACTGCCATTGCGGAAATTCAGTTTGCAGATTATATTTTCCCTGCTTTTGATC AGATAGTTAATGAAGCTGCCAAGTATCGTTATCGCTCTGGGGATCTCTTTAATTGTGGCA GCCTCACGATCCGGTCCCCTTGGGGCTGTGTCGGCCATGGGGCTCTCTATCATTCCCAGA GTCCTGAAGCATTCTTTGCCCACTGCCCAGGAATCAAGGTGGTTGTACCCAGAAGCCCTT TCCAAGCTAAGGGACTTCTCTTGTCATGCATAGAGGATAAAAATCCTTGTATATTTTTTG AACCTAAAATACTTTACAGAGCAGCAGTGGAACAGGTTCCCATAGAACCATACACTATCC CTCTGTCCCAGGCCGAAGTCATCCAAGAAGGGAGTGATGTGACTCTTGTTGCCTGGGGCA CTCAGGTTCATGTGATCCGAGAGGTTGCTTCCATGGCTCGGGAGAAGCTTGGAGTGTCCT GTGAGGTCATTGATCTGAGGACTATAATTCCTTGGGATGTAGATACAGTTTGTAAGTCTG TGATCAAAACAGGGCGACTGCTAGTTAGTCACGAGGCTCCCTTGACAGGCGGCTTTGCCT CGGAGATCAGCTCAACGGTTCAGGAAGAATGTTTCCTGAACCTTGAAGCTCCTATATCCA GAGTTTGTGGGTATGACACGCCATTCCCTCACATTTTTGAGCCGTTCTATATCCCAGACA AATGGAAATGCTATGATGCCCTTCGCAAAATGATCAACTATTGACCAGGGAGAAAAACTT GAAGATTGTGACTAGATACTGAAATATTTTTCTGATTTTTTTTTCTATATTTCCTCTTCT TGAAAATGGAGTTTTTATGAAATGAACCATCTTGGATATTGGTTGAAAAATTATGAATTA CTGTATTAAGACATGTAAATTGATCATTTCCATTAAGAGTATTTCAGAGTAATTTTTTAA ATGTTCCACATGGTAGGCTTATAAATTCTACTTAATTGCATCTGTACATATTGGCTGTGG GATAGTGTTCAATAAAGGAAAATCAGATTGTCTTCAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 45 entry(ies) | More info |
| Aligned organism(s): 45 entry(ies) | Help | Less info |
| 1-262, gnl|bosTau2|chr9 (8519139-8519388) | |
| 1-262, gnl|canFam2|chr12 (44011774-44011957) | |
| 1-262, gnl|dasNov1|scaffold_57910 (6746-6954) | |
| 1-262, gnl|echTel1|scaffold_323460 (399-182) | |
| 1-262, gnl|hg17|chr6 (80873070-80873268) | |
| 1-262, gnl|Hg17|chr6 (80873077-80873326) | |
| 1-262, gnl|loxAfr1|scaffold_12718 (43352-43557) | |
| 1-262, gnl|mm7|chr9 (84023369-84023548) | |
| 1-262, gnl|Mm7|chr9 (84023376-84023606) | |
| 1-262, gnl|monDom2|scaffold_0 (150999076-150998855) | |
| 1-262, gnl|oryCun1|scaffold_207246 (90881-90683) | |
| 1-262, gnl|panTro1|chr5 (82440516-82440714) | |
| 1-262, gnl|rheMac2|chr4 (76206328-76206523) | |
| 1-262, gnl|rn3|chr8 (89017415-89017594) | |
| 525-700, gnl|bosTau2|chr9 (8572541-8572717) | |
| 525-700, gnl|canFam2|chr12 (44058065-44058258) | |
| 525-700, gnl|danRer3|chr16 (469608-469771) | |
| 525-700, gnl|dasNov1|scaffold_67953 (6195-6381) | |
| 525-700, gnl|echTel1|scaffold_321968 (1112-925) | |
| 525-700, gnl|fr1|chrUn (112535371-112535552) | |
| 525-700, gnl|galGal2|chr3 (77464192-77464005) | |
| 525-700, gnl|hg17|chr6 (80935291-80935480) | |
| 525-700, gnl|Hg17|chr6 (80935290-80935468) | |
| 525-700, gnl|loxAfr1|scaffold_48026 (6978-6792) | |
| 525-700, gnl|mm7|chr9 (84088477-84088657) | |
| 525-700, gnl|Mm7|chr9 (84088474-84088645) | |
| 525-700, gnl|monDom2|scaffold_0 (150936549-150936369) | |
| 525-700, gnl|oryCun1|scaffold_207246 (5979-5790) | |
| 525-700, gnl|panTro1|chr5 (82502907-82503093) | |
| 525-700, gnl|rn3|chr8 (89063220-89063400) | |
| 525-700, gnl|tetNig1|chr8 (1824563-1824375) | |
| 525-700, gnl|xenTro1|scaffold_166 (1745990-1746179) | |
| 902-1016, gnl|bosTau2|chr9 (8614965-8615079) | |
| 902-1016, gnl|canFam2|chr12 (44086208-44086340) | |
| 902-1016, gnl|dasNov1|scaffold_38280 (7881-7743) | |
| 902-1016, gnl|echTel1|scaffold_323605 (68950-68811) | |
| 902-1016, gnl|fr1|chrUn (112539099-112539231) | |
| 902-1016, gnl|hg17|chr6 (80969522-80969660) | |
| 902-1016, gnl|Hg17|chr6 (80969534-80969648) | |
| 902-1016, gnl|mm7|chr9 (84110636-84110774) | |
| 902-1016, gnl|Mm7|chr9 (84110648-84110762) | |
| 902-1016, gnl|panTro1|chr5 (82537635-82537773) | |
| 902-1016, gnl|rheMac2|chr4 (76300744-76300882) | |
| 902-1016, gnl|rn3|chr8 (89080166-89080304) | |
| 902-1016, gnl|tetNig1|chr8 (1820577-1820454) |
| Aligned organism(s): 45 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-262, gnl|bosTau2|chr9 (8519139-8519388) | |
| 1-262, gnl|canFam2|chr12 (44011774-44011957) | |
| 1-262, gnl|dasNov1|scaffold_57910 (6746-6954) | |
| 1-262, gnl|echTel1|scaffold_323460 (399-182) | |
| 1-262, gnl|hg17|chr6 (80873070-80873268) | |
| 1-262, gnl|Hg17|chr6 (80873077-80873326) | |
| 1-262, gnl|loxAfr1|scaffold_12718 (43352-43557) | |
| 1-262, gnl|mm7|chr9 (84023369-84023548) | |
| 1-262, gnl|Mm7|chr9 (84023376-84023606) | |
| 1-262, gnl|monDom2|scaffold_0 (150999076-150998855) | |
| 1-262, gnl|oryCun1|scaffold_207246 (90881-90683) | |
| 1-262, gnl|panTro1|chr5 (82440516-82440714) | |
| 1-262, gnl|rheMac2|chr4 (76206328-76206523) | |
| 1-262, gnl|rn3|chr8 (89017415-89017594) | |
| 525-700, gnl|bosTau2|chr9 (8572541-8572717) | |
| 525-700, gnl|canFam2|chr12 (44058065-44058258) | |
| 525-700, gnl|danRer3|chr16 (469608-469771) | |
| 525-700, gnl|dasNov1|scaffold_67953 (6195-6381) | |
| 525-700, gnl|echTel1|scaffold_321968 (1112-925) | |
| 525-700, gnl|fr1|chrUn (112535371-112535552) | |
| 525-700, gnl|galGal2|chr3 (77464192-77464005) | |
| 525-700, gnl|hg17|chr6 (80935291-80935480) | |
| 525-700, gnl|Hg17|chr6 (80935290-80935468) | |
| 525-700, gnl|loxAfr1|scaffold_48026 (6978-6792) | |
| 525-700, gnl|mm7|chr9 (84088477-84088657) | |
| 525-700, gnl|Mm7|chr9 (84088474-84088645) | |
| 525-700, gnl|monDom2|scaffold_0 (150936549-150936369) | |
| 525-700, gnl|oryCun1|scaffold_207246 (5979-5790) | |
| 525-700, gnl|panTro1|chr5 (82502907-82503093) | |
| 525-700, gnl|rn3|chr8 (89063220-89063400) | |
| 525-700, gnl|tetNig1|chr8 (1824563-1824375) | |
| 525-700, gnl|xenTro1|scaffold_166 (1745990-1746179) | |
| 902-1016, gnl|bosTau2|chr9 (8614965-8615079) | |
| 902-1016, gnl|canFam2|chr12 (44086208-44086340) | |
| 902-1016, gnl|dasNov1|scaffold_38280 (7881-7743) | |
| 902-1016, gnl|echTel1|scaffold_323605 (68950-68811) | |
| 902-1016, gnl|fr1|chrUn (112539099-112539231) | |
| 902-1016, gnl|hg17|chr6 (80969522-80969660) | |
| 902-1016, gnl|Hg17|chr6 (80969534-80969648) | |
| 902-1016, gnl|mm7|chr9 (84110636-84110774) | |
| 902-1016, gnl|Mm7|chr9 (84110648-84110762) | |
| 902-1016, gnl|panTro1|chr5 (82537635-82537773) | |
| 902-1016, gnl|rheMac2|chr4 (76300744-76300882) | |
| 902-1016, gnl|rn3|chr8 (89080166-89080304) | |
| 902-1016, gnl|tetNig1|chr8 (1820577-1820454) |
| Expressed library(ies): 35 entry(ies) | More info |
| Expressed library(ies): 35 entry(ies) | Help | Less info |
| cte (0.58548) | |
| pro (0.512033) | |
| cki (0.495704) | |
| ova (0.387397) | |
| sag (0.36543) | |
| fty (0.351679) | |
| vin (0.332557) | |
| ste (0.270416) | |
| cov (0.264306) | |
| kid (0.259471) | |
| spc (0.226732) | |
| tes (0.207814) | |
| fli (0.202881) | |
| col (0.195008) | |
| sto (0.179824) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| rec (0.17307) | |
| cut (0.169924) | |
| nje (0.16592) | |
| fco (0.157208) | |
| lun (0.150489) | |
| isp (0.150376) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| ski (0.146735) | |
| lin (0.145603) | |
| cst (0.140036) | |
| che (0.136314) | |
| lyg (0.133103) | |
| sug (0.127291) | |
| thg (0.126791) | |
| med (0.116252) | |
| ecc (0.115035) | |
| ldo (0.0970026) |
| Expressed library(ies): 35 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (0.58548) | |
| pro (0.512033) | |
| cki (0.495704) | |
| ova (0.387397) | |
| sag (0.36543) | |
| fty (0.351679) | |
| vin (0.332557) | |
| ste (0.270416) | |
| cov (0.264306) | |
| kid (0.259471) | |
| spc (0.226732) | |
| tes (0.207814) | |
| fli (0.202881) | |
| col (0.195008) | |
| sto (0.179824) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| rec (0.17307) | |
| cut (0.169924) | |
| nje (0.16592) | |
| fco (0.157208) | |
| lun (0.150489) | |
| isp (0.150376) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| ski (0.146735) | |
| lin (0.145603) | |
| cst (0.140036) | |
| che (0.136314) | |
| lyg (0.133103) | |
| sug (0.127291) | |
| thg (0.126791) | |
| med (0.116252) | |
| ecc (0.115035) | |
| ldo (0.0970026) |