Non-Coding RNA Search

Ss1.1-Thy1-THY010034H04.5

Sequence:


               
               GGTGTCCGGGTGTGCCAGCCGCCACCACTGCCCGAGAGTGTGCGGCCCGGTCAGGAAGCG
CCGAACGAGCCCGCTGCACGGCCATCGTGGGGGAAGCAAGGCTTCTTAGTTCCACCACCC
CTCCTAAGTGAAGGTTTCCGCCCCGGGAGAGGAGGTGGCGCCCAGCCTCGGCCGTCGCCT
TCCGCTGGAGTGCAGGCTTTGGGACCGTCCATTGTTGCCTGAGCGTAGGGGTGGGCGTGG
CGTCTCCACCTCCTCCGGGAACACACTCGGGCCCACAGCACTCGCTCGTCCTGCGGAGCT
GCGGCGCCAAGATGAGCGAAGAGGAGAACCCAGCGAGCAAGCCCACGCCGGTGCAGGACG
TGCAGGGCGACGGGCGCTGGATGTCCCTGCACCATCGGTTCGTAGCCGACAGCAAAGATA
AGGAACCCGAAGTCGTCTTCATCGGGGACTCCTTGGTTCAGCTCATGCACCAGTGTGAGA
TCTGGCGGGAGCTCTTTTCCCCTCTGCATGCACTTAACTTTGGCATTGGTGGTGACAACA
CGCAGCATGTGCTGTGGCGTCTGGAGAATGGGGAGCTGGAACACATCCGACCCAAGATTG
TGGTGGTCTGGGTGGGTACTAACAACCACGGGCACACTGCGGAGCAGGTGACTGGCGGCA
TCAAGGCCATTGTGCATCTGGTGAACCAGCGGCAGCCCCAGGCCCGAGTCGTGGTGCTGG
GCCTGCTTCCTCGGGGTCAGCACCCCAATCCACTCCGTGAGAAAAACCGACGGGTGAATG
AACTGGTACGAGCGGCATTGGCTGGCCACCCACGGGCCCACTTTCTGGATGCAGACCCTG
GCTTTGTGCACTCAGATGGAACCATAAGCCACCATGACATGTATGATTACCTGCATCTGA
GCCGTCTGGGGTACACACCTGTTTGCCGGGCCCTGCACTCCCTGCTTCTGCGTCTGCTGG
CCCAAGACCAGGGACAGGGTTTTGTCCCCCCACCAGAGCCTGCACCCTAAGCATCTGCCT
TCCTGCTACATTAAATTCTCATTCTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGTCCGGGTGTGCCAGCCGCCACCACTGCCCGAGAGTGTGCGGCCCGGTCAGGAAGCG
CCGAACGAGCCCGCTGCACGGCCATCGTGGGGGAAGCAAGGCTTCTTAGTTCCACCACCC
CTCCTAAGTGAAGGTTTCCGCCCCGGGAGAGGAGGTGGCGCCCAGCCTCGGCCGTCGCCT
TCCGCTGGAGTGCAGGCTTTGGGACCGTCCATTGTTGCCTGAGCGTAGGGGTGGGCGTGG
CGTCTCCACCTCCTCCGGGAACACACTCGGGCCCACAGCACTCGCTCGTCCTGCGGAGCT
GCGGCGCCAAGATGAGCGAAGAGGAGAACCCAGCGAGCAAGCCCACGCCGGTGCAGGACG
TGCAGGGCGACGGGCGCTGGATGTCCCTGCACCATCGGTTCGTAGCCGACAGCAAAGATA
AGGAACCCGAAGTCGTCTTCATCGGGGACTCCTTGGTTCAGCTCATGCACCAGTGTGAGA
TCTGGCGGGAGCTCTTTTCCCCTCTGCATGCACTTAACTTTGGCATTGGTGGTGACAACA
CGCAGCATGTGCTGTGGCGTCTGGAGAATGGGGAGCTGGAACACATCCGACCCAAGATTG
TGGTGGTCTGGGTGGGTACTAACAACCACGGGCACACTGCGGAGCAGGTGACTGGCGGCA
TCAAGGCCATTGTGCATCTGGTGAACCAGCGGCAGCCCCAGGCCCGAGTCGTGGTGCTGG
GCCTGCTTCCTCGGGGTCAGCACCCCAATCCACTCCGTGAGAAAAACCGACGGGTGAATG
AACTGGTACGAGCGGCATTGGCTGGCCACCCACGGGCCCACTTTCTGGATGCAGACCCTG
GCTTTGTGCACTCAGATGGAACCATAAGCCACCATGACATGTATGATTACCTGCATCTGA
GCCGTCTGGGGTACACACCTGTTTGCCGGGCCCTGCACTCCCTGCTTCTGCGTCTGCTGG
CCCAAGACCAGGGACAGGGTTTTGTCCCCCCACCAGAGCCTGCACCCTAAGCATCTGCCT
TCCTGCTACATTAAATTCTCATTCTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               PA1B3_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               PA1B3_BOVIN

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               719-838, - strand, RNAz p=0.665146
               

               
               935-1048, - strand, RNAz p=0.5761

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               719-838, - strand, RNAz p=0.665146
               

               
               935-1048, - strand, RNAz p=0.5761

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-389, gnl|bosTau2|chr18 (45010679-45010287)
               

               
               1-389, gnl|Hg17|chr19 (47498600-47498224)
               

               
               1-389, gnl|Mm7|chr7 (22086148-22085779)
               


               
               478-616, gnl|bosTau2|chr18 (45009317-45009179)
               

               
               478-616, gnl|Hg17|chr19 (47496281-47496143)
               

               
               478-616, gnl|Mm7|chr7 (22084846-22084709)
               


               
               719-1048, gnl|bosTau2|chr18 (45008327-45007998)
               

               
               719-1048, gnl|Hg17|chr19 (47493358-47493028)
               

               
               719-1048, gnl|Mm7|chr7 (22083784-22083457)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-389, gnl|bosTau2|chr18 (45010679-45010287)
               

               
               1-389, gnl|Hg17|chr19 (47498600-47498224)
               

               
               1-389, gnl|Mm7|chr7 (22086148-22085779)
               


               
               478-616, gnl|bosTau2|chr18 (45009317-45009179)
               

               
               478-616, gnl|Hg17|chr19 (47496281-47496143)
               

               
               478-616, gnl|Mm7|chr7 (22084846-22084709)
               


               
               719-1048, gnl|bosTau2|chr18 (45008327-45007998)
               

               
               719-1048, gnl|Hg17|chr19 (47493358-47493028)
               

               
               719-1048, gnl|Mm7|chr7 (22083784-22083457)

Expressed library(ies): 18 entry(ies)

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Expressed library(ies): 18 entry(ies)

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               fce (0.543183)
               

               
               fhi (0.339155)
               

               
               csp (0.322373)
               

               
               cbr (0.255951)
               

               
               cly (0.241284)
               

               
               ecc (0.23007)
               

               
               nep (0.183925)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               nca (0.136874)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.543183)
               

               
               fhi (0.339155)
               

               
               csp (0.322373)
               

               
               cbr (0.255951)
               

               
               cly (0.241284)
               

               
               ecc (0.23007)
               

               
               nep (0.183925)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               nca (0.136874)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	719-838, - strand, RNAz p=0.665146
	935-1048, - strand, RNAz p=0.5761

	1-389, gnl\|bosTau2\|chr18 (45010679-45010287)
	1-389, gnl\|Hg17\|chr19 (47498600-47498224)
	1-389, gnl\|Mm7\|chr7 (22086148-22085779)

	478-616, gnl\|bosTau2\|chr18 (45009317-45009179)
	478-616, gnl\|Hg17\|chr19 (47496281-47496143)
	478-616, gnl\|Mm7\|chr7 (22084846-22084709)

	719-1048, gnl\|bosTau2\|chr18 (45008327-45007998)
	719-1048, gnl\|Hg17\|chr19 (47493358-47493028)
	719-1048, gnl\|Mm7\|chr7 (22083784-22083457)

	fce (0.543183)
	fhi (0.339155)
	csp (0.322373)
	cbr (0.255951)
	cly (0.241284)
	ecc (0.23007)
	nep (0.183925)
	mcp (0.170648)
	nco (0.161734)
	nca (0.136874)
	cov (0.132153)
	ese (0.126502)
	ebs (0.118301)
	med (0.116252)
	cty (0.10408)
	jej (0.0989218)
	eje (0.0988338)
	ldo (0.0970026)