Non-Coding RNA Search

Ss1.1-Thy1-THY010035A03.5

Sequence:


               
               AGCTGCAACACCGCCCTCCCGCGCCGCACCGGCATGAAGCCTCCTCAGCGGCGGCGAGCC
GCCCCAGCGCGCTATCTGGGAGAGGTGACCCGGCCCGCGGCCTGGAGCGCCCGCGAGAAG
CGGCAGCTTTTACGACTGCTGCAGGCGCGACGGGGCCAGCCGGAGCCGGACGCCGCCGAG
CTGGCCCGGGAACTGTCGGGCAGAAGTGATGCGGAGGTCCAGGACTTTCTGCGGCAGCTC
AAGCGCCGAGTGGCCCGGGAAGCCATTCAGAGGATGTATCCTGGTGGCCCACAAGGTCTA
AGACGCCAGGAAGCACAGCCCCCAGCCCCCATCGAGGTATGGATGGATCTGGCTGAAAAG
GTAACAGGCCCGCTGGAAGAATCCCTGACTGTGGCTTTCTCACAGGTGCTCACCATTGCA
GCCACGGAGCCCATCAGCCTCCTGCACTCCAAGCCCCCCAAGCCCACCCAGGCTCGAGGA
AAGCAACTGCTCCTCAGTGCTCCTGGAGGGCAGGAGGACAAGGGCCCTGAGGCTCCTGGC
CCTGCCCCCAAGGTGCAAGGTCCTGCCCCTGAGGCATCTTCTGAGTCCCTGGCTGGTCCA
TCTGCTGAGGGAGAGTTTTCTGTGGACTTTGAGAAGATCTACAAGTACCTGTCATCCATC
TCCCGCAGCTGCCACGGCCCAGAGCTTTCTGCAGCTGAGTCAGCTGTGGTCCTTGACTTG
CTCATGGCACTTCCTGAGGAGTTGTCCCGCCTGCCCTGTGCTGCCTTGGTTGAACATATG
ACAGATATGTACCTACACCTGATGGCCCCCCAGCCCGACTCTGCCAATGGGAGCCTGGGA
TCTGGGGCCGAGGATGGTGGGTCAGGCTCCAGGGGGCAAGAGGAGGCTGGCCAGGCCACC
CCTCAGGCTCCTGAGAATGCTGGGCCCAGTGAAGCGATATCTACTTGGCAAGCAGCTGGA
GTCTGCCCCTTGAACCCATTCCTGGTACCCCTGGAACTTCTAGGCCAGGCTGCCACCCCT
GCAAGGTGAGGGGCCAGTAGGCAGAGGATACACCCAACATTGGTGAGCCCCCTGGCCCTC
AATCCCGCTTGGGCTGGCACTGGGTTGTCATGAGGATCTTTCCAAGGTGGAAGGTCCCTC
ACATGGTGCACAACAGAGCGGCCTTCAAGACACTAGGTGTAGAAGTTCCCTGGTGGTTCA
GCGGGTTAAGGATCCGCCATTGTCACTGCTGTGGCTCAAGTCTCTTAGGTGGCACAGTTT
CAATGCCTGGCTCAGGGACTTCCCTGTGCCACAGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCTGCAACACCGCCCTCCCGCGCCGCACCGGCATGAAGCCTCCTCAGCGGCGGCGAGCC
GCCCCAGCGCGCTATCTGGGAGAGGTGACCCGGCCCGCGGCCTGGAGCGCCCGCGAGAAG
CGGCAGCTTTTACGACTGCTGCAGGCGCGACGGGGCCAGCCGGAGCCGGACGCCGCCGAG
CTGGCCCGGGAACTGTCGGGCAGAAGTGATGCGGAGGTCCAGGACTTTCTGCGGCAGCTC
AAGCGCCGAGTGGCCCGGGAAGCCATTCAGAGGATGTATCCTGGTGGCCCACAAGGTCTA
AGACGCCAGGAAGCACAGCCCCCAGCCCCCATCGAGGTATGGATGGATCTGGCTGAAAAG
GTAACAGGCCCGCTGGAAGAATCCCTGACTGTGGCTTTCTCACAGGTGCTCACCATTGCA
GCCACGGAGCCCATCAGCCTCCTGCACTCCAAGCCCCCCAAGCCCACCCAGGCTCGAGGA
AAGCAACTGCTCCTCAGTGCTCCTGGAGGGCAGGAGGACAAGGGCCCTGAGGCTCCTGGC
CCTGCCCCCAAGGTGCAAGGTCCTGCCCCTGAGGCATCTTCTGAGTCCCTGGCTGGTCCA
TCTGCTGAGGGAGAGTTTTCTGTGGACTTTGAGAAGATCTACAAGTACCTGTCATCCATC
TCCCGCAGCTGCCACGGCCCAGAGCTTTCTGCAGCTGAGTCAGCTGTGGTCCTTGACTTG
CTCATGGCACTTCCTGAGGAGTTGTCCCGCCTGCCCTGTGCTGCCTTGGTTGAACATATG
ACAGATATGTACCTACACCTGATGGCCCCCCAGCCCGACTCTGCCAATGGGAGCCTGGGA
TCTGGGGCCGAGGATGGTGGGTCAGGCTCCAGGGGGCAAGAGGAGGCTGGCCAGGCCACC
CCTCAGGCTCCTGAGAATGCTGGGCCCAGTGAAGCGATATCTACTTGGCAAGCAGCTGGA
GTCTGCCCCTTGAACCCATTCCTGGTACCCCTGGAACTTCTAGGCCAGGCTGCCACCCCT
GCAAGGTGAGGGGCCAGTAGGCAGAGGATACACCCAACATTGGTGAGCCCCCTGGCCCTC
AATCCCGCTTGGGCTGGCACTGGGTTGTCATGAGGATCTTTCCAAGGTGGAAGGTCCCTC
ACATGGTGCACAACAGAGCGGCCTTCAAGACACTAGGTGTAGAAGTTCCCTGGTGGTTCA
GCGGGTTAAGGATCCGCCATTGTCACTGCTGTGGCTCAAGTCTCTTAGGTGGCACAGTTT
CAATGCCTGGCTCAGGGACTTCCCTGTGCCACAGGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61821805|ref|XP_594215.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61821805|ref|XP_594215.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               420-536, - strand, RNAz p=0.999887

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               420-536, - strand, RNAz p=0.999887

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               13-218, gnl|bosTau2|chr7 (13018899-13018694)
               

               
               13-218, gnl|canFam2|chr20 (55609778-55610036)
               

               
               13-218, gnl|echTel1|scaffold_282750 (52525-52293)
               

               
               13-218, gnl|hg17|chr19 (7891238-7891500)
               

               
               13-218, gnl|Hg17|chr19 (7891231-7891436)
               

               
               13-218, gnl|mm7|chr8 (4217388-4217651)
               

               
               13-218, gnl|Mm7|chr8 (4217374-4217575)
               

               
               13-218, gnl|panTro1|chr20 (8246199-8246458)
               

               
               13-218, gnl|rheMac2|chr19 (8003769-8003507)
               

               
               13-218, gnl|rn3|chr12 (1538043-1537789)
               


               
               382-553, gnl|bosTau2|chr7 (13017167-13016995)
               

               
               382-553, gnl|Hg17|chr19 (7892897-7893067)
               

               
               382-553, gnl|Mm7|chr8 (4219237-4219456)
               


               
               692-1139, gnl|bosTau2|chr7 (13016728-13016290)
               

               
               692-1139, gnl|Hg17|chr19 (7893324-7893755)
               

               
               692-1139, gnl|Mm7|chr8 (4219744-4220178)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-218, gnl|bosTau2|chr7 (13018899-13018694)
               

               
               13-218, gnl|canFam2|chr20 (55609778-55610036)
               

               
               13-218, gnl|echTel1|scaffold_282750 (52525-52293)
               

               
               13-218, gnl|hg17|chr19 (7891238-7891500)
               

               
               13-218, gnl|Hg17|chr19 (7891231-7891436)
               

               
               13-218, gnl|mm7|chr8 (4217388-4217651)
               

               
               13-218, gnl|Mm7|chr8 (4217374-4217575)
               

               
               13-218, gnl|panTro1|chr20 (8246199-8246458)
               

               
               13-218, gnl|rheMac2|chr19 (8003769-8003507)
               

               
               13-218, gnl|rn3|chr12 (1538043-1537789)
               


               
               382-553, gnl|bosTau2|chr7 (13017167-13016995)
               

               
               382-553, gnl|Hg17|chr19 (7892897-7893067)
               

               
               382-553, gnl|Mm7|chr8 (4219237-4219456)
               


               
               692-1139, gnl|bosTau2|chr7 (13016728-13016290)
               

               
               692-1139, gnl|Hg17|chr19 (7893324-7893755)
               

               
               692-1139, gnl|Mm7|chr8 (4219744-4220178)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               col (0.195008)
               

               
               nje (0.16592)
               

               
               nmm (0.132802)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)
               

               
               nje (0.16592)
               

               
               nmm (0.132802)

	13-218, gnl\|bosTau2\|chr7 (13018899-13018694)
	13-218, gnl\|canFam2\|chr20 (55609778-55610036)
	13-218, gnl\|echTel1\|scaffold_282750 (52525-52293)
	13-218, gnl\|hg17\|chr19 (7891238-7891500)
	13-218, gnl\|Hg17\|chr19 (7891231-7891436)
	13-218, gnl\|mm7\|chr8 (4217388-4217651)
	13-218, gnl\|Mm7\|chr8 (4217374-4217575)
	13-218, gnl\|panTro1\|chr20 (8246199-8246458)
	13-218, gnl\|rheMac2\|chr19 (8003769-8003507)
	13-218, gnl\|rn3\|chr12 (1538043-1537789)

	382-553, gnl\|bosTau2\|chr7 (13017167-13016995)
	382-553, gnl\|Hg17\|chr19 (7892897-7893067)
	382-553, gnl\|Mm7\|chr8 (4219237-4219456)

	692-1139, gnl\|bosTau2\|chr7 (13016728-13016290)
	692-1139, gnl\|Hg17\|chr19 (7893324-7893755)
	692-1139, gnl\|Mm7\|chr8 (4219744-4220178)