Non-Coding RNA Search

Ss1.1-Thy1-THY010035G01.5

Sequence:


               
               ATAAAAGAATATATAGTTTTTACATGATGATATTTCAATAAGAAATGTTTTTTATATATT
GCAATGTAAGCAAATGCTTATCTCCAAATTAGGCAAACGTGGCTTTTCATACTATTTGAG
CCATAGGGTCATGAGCAGAAGTTAAAATGAAAAACATTCTGAAGCCAACCAAGTGCCTGA
GAGGAGAAAGAAATCACCATTCTGCAAACCTATACCTTCTGAAACAATGACTTATGCTAT
ATTCTCAAAGCTGATGATCCAAAGAATCTTGATGTAAAGGAAATTTCTTCATGCCTAACA
TAAGGACATTCACTGGCTTTCATATAAGGCCACAGTCTCTATCCCTCCTTAGCCAGTGAA
AACAAGACAGTCCAAGGAACAGCAGTCAATGGACTTGAATCTTCAGAGCTGGAAGATAGG
TGTGTCGGCTCTGTTGTCTTTGTGCCCTCAAGAACTTCAAGCCTTTTCTCATTTTCAAGT
CAAATGACCATGTCTCCAGAAGAAAAAAAAAAATCCTGAAACAGAAAAATTATAAGGGAC
ATAGATGTTCTTGAAAAGTAGGGTTTTCCTTTTGGTCTATAAAAAATAGTCTCAGTGAGA
GTTGGAAGCACCTTCTGATAGGATAAAATTTAAATAGTGATTTAAATAGAACTCATCATA
ACACAGCATCTATCTCTGACATCACTGCATCCTTGAAAAACTCCAAAGTTAACATTTCTT
AAATGCCTTTCATATTTGTTTAATGAATCCATAAAAACTCTTAACTAAGAATAGTACACA
TTATATGTAACCTTTTATTTTCAAGCCAAAATTGTGGTATATAAATAAAAACATTTTGGA
TAAATCCCTCAAGTCTTTAAGCAAGTGATTATTAAATGAAATTCAGAGGCTATGGTCAAG
AATCCTCCTCCTCCCAAAAAACTGGCAAGAAATAAGTTGGGATGGAGAGAAGATGGCTAT
GTAGGAACGGTATTTTCTGTGATAGCAGTGGAGAGAGTAACGTTGCCATCAACATAGGGT
CAAGATTAAGGGAATACAGGAGTTCCCGTCGTGGCTCAGTGGTTAACGAATCCGACTAGG
AACCATGAGGTTGCGGATTCCATCCCTGGCCTTGCTCAGTGGGTTAAGGATCTAGCATTG
CCATGACCTGTGGTGCAGGTTGCAGACATGGCTCGGATCCCGGGTTTCTGTGGCTGTGGC
GCAGGCCGGCGGCTACAGCTCCAATTCGACCCCTAGCCTGGGAACCTCCATATGCCGTGG
GAGCGGCCCAAGAAATGGCAAAAAGACCAAAAAAAAAAAAAAAAGATTAAGGGAATACAG
GGTAAATGGGCTGGAGTCACTGAGGGAGATCTCAGGAGCAGTGGAGTGGGTGGAATGGAG
TCAGGAGGGATGAGAATCATATGATCATCAGGAATAGGAGGCACTGGGGGTGCAATCAAT
GGATACAGAACTCACATCTCCCCACAGACACCTCAAAAATGCATCTACATATGGCAAAAT
TCTCATCGAAAACTTACTGGAGACTGGCAGAAAGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAAAAGAATATATAGTTTTTACATGATGATATTTCAATAAGAAATGTTTTTTATATATT
GCAATGTAAGCAAATGCTTATCTCCAAATTAGGCAAACGTGGCTTTTCATACTATTTGAG
CCATAGGGTCATGAGCAGAAGTTAAAATGAAAAACATTCTGAAGCCAACCAAGTGCCTGA
GAGGAGAAAGAAATCACCATTCTGCAAACCTATACCTTCTGAAACAATGACTTATGCTAT
ATTCTCAAAGCTGATGATCCAAAGAATCTTGATGTAAAGGAAATTTCTTCATGCCTAACA
TAAGGACATTCACTGGCTTTCATATAAGGCCACAGTCTCTATCCCTCCTTAGCCAGTGAA
AACAAGACAGTCCAAGGAACAGCAGTCAATGGACTTGAATCTTCAGAGCTGGAAGATAGG
TGTGTCGGCTCTGTTGTCTTTGTGCCCTCAAGAACTTCAAGCCTTTTCTCATTTTCAAGT
CAAATGACCATGTCTCCAGAAGAAAAAAAAAAATCCTGAAACAGAAAAATTATAAGGGAC
ATAGATGTTCTTGAAAAGTAGGGTTTTCCTTTTGGTCTATAAAAAATAGTCTCAGTGAGA
GTTGGAAGCACCTTCTGATAGGATAAAATTTAAATAGTGATTTAAATAGAACTCATCATA
ACACAGCATCTATCTCTGACATCACTGCATCCTTGAAAAACTCCAAAGTTAACATTTCTT
AAATGCCTTTCATATTTGTTTAATGAATCCATAAAAACTCTTAACTAAGAATAGTACACA
TTATATGTAACCTTTTATTTTCAAGCCAAAATTGTGGTATATAAATAAAAACATTTTGGA
TAAATCCCTCAAGTCTTTAAGCAAGTGATTATTAAATGAAATTCAGAGGCTATGGTCAAG
AATCCTCCTCCTCCCAAAAAACTGGCAAGAAATAAGTTGGGATGGAGAGAAGATGGCTAT
GTAGGAACGGTATTTTCTGTGATAGCAGTGGAGAGAGTAACGTTGCCATCAACATAGGGT
CAAGATTAAGGGAATACAGGAGTTCCCGTCGTGGCTCAGTGGTTAACGAATCCGACTAGG
AACCATGAGGTTGCGGATTCCATCCCTGGCCTTGCTCAGTGGGTTAAGGATCTAGCATTG
CCATGACCTGTGGTGCAGGTTGCAGACATGGCTCGGATCCCGGGTTTCTGTGGCTGTGGC
GCAGGCCGGCGGCTACAGCTCCAATTCGACCCCTAGCCTGGGAACCTCCATATGCCGTGG
GAGCGGCCCAAGAAATGGCAAAAAGACCAAAAAAAAAAAAAAAAGATTAAGGGAATACAG
GGTAAATGGGCTGGAGTCACTGAGGGAGATCTCAGGAGCAGTGGAGTGGGTGGAATGGAG
TCAGGAGGGATGAGAATCATATGATCATCAGGAATAGGAGGCACTGGGGGTGCAATCAAT
GGATACAGAACTCACATCTCCCCACAGACACCTCAAAAATGCATCTACATATGGCAAAAT
TCTCATCGAAAACTTACTGGAGACTGGCAGAAAGAC

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               23-1029, gnl|bosTau2|chr15 (28995662-28994694)
               

               
               23-1029, gnl|Hg17|chr11 (6690902-6687673)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               23-1029, gnl|bosTau2|chr15 (28995662-28994694)
               

               
               23-1029, gnl|Hg17|chr11 (6690902-6687673)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               sin (0.174948)
               

               
               rec (0.17307)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               kid (0.129735)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               kid (0.129735)

	23-1029, gnl\|bosTau2\|chr15 (28995662-28994694)
	23-1029, gnl\|Hg17\|chr11 (6690902-6687673)

	sin (0.174948)
	rec (0.17307)
	bfe (0.149858)
	lin (0.145603)
	kid (0.129735)