Ss1.1-Thy1-THY010035G02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGACCTGCCATGAAAGAACGTTTGATTATAGAATTATGTCACCAGTTCCCTCATGGAATC ACAGACCAAGTAATTCAGAATGAAATGCCGCACATAGAAGCCCAGCAGCGGGCAGTGGCC ATCAATAGATTGTTGTCCATGGGTCAGTTGGATCTCTTAAGAAGCAATACAGGCCTTCTG TATAGAATAAAGGACTCTCAGAATGCTGGCCCTGTCTCATTCTTTTTAAGTAAAATGAAA GGATCAGATAATCAAGAGAAACTAGTATATCAAATCATAGAGGATGCGGGAAATAAAGGA ATATGGAGCAGAGATATCCGATACAAAAGCAACTTGCCATTGACAGAAATTAACAAAATT CTAAAGAATCTAGAAAGTAAAAAGCTTATCAAAGCTGTTAAGTCTGTGGCAGCCTCTAAA AAGAAGGTGTATATGCTCTATAACCTGCAGCCGGACCGGTCTGTGACTGGAGGAGCCTGG TACAGTGACCAGGATTTTGAATCTGAATTTGTAGAAGTGCTTAACCAACAGTGTTTCAAA TTCTTGCAAACCAAGGCAGAAACGGCAAGAGAAAGCAAACAGAATCCCGTTATCCAAAGA AATAGTTCTTTTGCTTCATCACATGAAGTGTGGAAGTATATCTGTGAGTTGGGGATCAGT AAGGTAGAGTTGTCCATGGAGGACATTGAGACCATCTTGAATACGCTCATTTATGATGGG AAAGTGGAGATGACCATCATTGCTGCAAAAGAAGGCACTGTTGGCAGTGTGGACGGGCAC ATGAAACTATACAGGGCAGTCAACCCAATCATCTCTCCCACGGGATTGGTCCGGGCCCCC TGTGGACTCTGCCCGGTATTTGATGACTGCCACGAAGGTGGTGAGATTTCCCCATCGAAC TGTATTTACATGACAGAGTGGCTTGAATTTTAATAGAGAGATACGAACTTTACTGACATT TTGCCAATGAAGTTACATTGGAAGCAAGTAATTAATGACGGAACATCAGATTCACTTCAA GGCAAACTTCAAGATACAGACTCATTGCTATGGAAAAGTATTTTTGAAGACTAAATTTAT ATTGGTAGTCAACAGAATATGCAACAGGTAAGGTTAGTAGTAAAATCTATCCTTCAATAA ATCAAATATTTCTGGAAGACCACACTCTGAAACGTCCAAGATTTTTGATAATTCACAGAA AAGGAAGCCAACATCCCATATTCACCAAGTACTGTGATAATGACTGGAGCTTTAAAATGC CCATTTTAAAGTTATTTATTAAGGTCTTCATTGGGAATTTTTTATATATGGCTTACTATT GCCATTTCTGTTTTGTTTTCTCAGTGGTTTCATTGAGAAGAACTTAAAAGTGGTGAAGGC AGGAATAGCAGGGGAGGACACAGCAAACTTAGAGCATGAGTGGGGGAGAGAGGGGAACAT CCCTTTTCCAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGACCTGCCATGAAAGAACGTTTGATTATAGAATTATGTCACCAGTTCCCTCATGGAATC ACAGACCAAGTAATTCAGAATGAAATGCCGCACATAGAAGCCCAGCAGCGGGCAGTGGCC ATCAATAGATTGTTGTCCATGGGTCAGTTGGATCTCTTAAGAAGCAATACAGGCCTTCTG TATAGAATAAAGGACTCTCAGAATGCTGGCCCTGTCTCATTCTTTTTAAGTAAAATGAAA GGATCAGATAATCAAGAGAAACTAGTATATCAAATCATAGAGGATGCGGGAAATAAAGGA ATATGGAGCAGAGATATCCGATACAAAAGCAACTTGCCATTGACAGAAATTAACAAAATT CTAAAGAATCTAGAAAGTAAAAAGCTTATCAAAGCTGTTAAGTCTGTGGCAGCCTCTAAA AAGAAGGTGTATATGCTCTATAACCTGCAGCCGGACCGGTCTGTGACTGGAGGAGCCTGG TACAGTGACCAGGATTTTGAATCTGAATTTGTAGAAGTGCTTAACCAACAGTGTTTCAAA TTCTTGCAAACCAAGGCAGAAACGGCAAGAGAAAGCAAACAGAATCCCGTTATCCAAAGA AATAGTTCTTTTGCTTCATCACATGAAGTGTGGAAGTATATCTGTGAGTTGGGGATCAGT AAGGTAGAGTTGTCCATGGAGGACATTGAGACCATCTTGAATACGCTCATTTATGATGGG AAAGTGGAGATGACCATCATTGCTGCAAAAGAAGGCACTGTTGGCAGTGTGGACGGGCAC ATGAAACTATACAGGGCAGTCAACCCAATCATCTCTCCCACGGGATTGGTCCGGGCCCCC TGTGGACTCTGCCCGGTATTTGATGACTGCCACGAAGGTGGTGAGATTTCCCCATCGAAC TGTATTTACATGACAGAGTGGCTTGAATTTTAATAGAGAGATACGAACTTTACTGACATT TTGCCAATGAAGTTACATTGGAAGCAAGTAATTAATGACGGAACATCAGATTCACTTCAA GGCAAACTTCAAGATACAGACTCATTGCTATGGAAAAGTATTTTTGAAGACTAAATTTAT ATTGGTAGTCAACAGAATATGCAACAGGTAAGGTTAGTAGTAAAATCTATCCTTCAATAA ATCAAATATTTCTGGAAGACCACACTCTGAAACGTCCAAGATTTTTGATAATTCACAGAA AAGGAAGCCAACATCCCATATTCACCAAGTACTGTGATAATGACTGGAGCTTTAAAATGC CCATTTTAAAGTTATTTATTAAGGTCTTCATTGGGAATTTTTTATATATGGCTTACTATT GCCATTTCTGTTTTGTTTTCTCAGTGGTTTCATTGAGAAGAACTTAAAAGTGGTGAAGGC AGGAATAGCAGGGGAGGACACAGCAAACTTAGAGCATGAGTGGGGGAGAGAGGGGAACAT CCCTTTTCCAGA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 24-154, gnl|bosTau2|chr13 (24235009-24235138) | |
| 24-154, gnl|canFam2|chr24 (7725075-7724925) | |
| 24-154, gnl|danRer3|chrUn (179150088-179150217) | |
| 24-154, gnl|dasNov1|scaffold_120766 (1620-1466) | |
| 24-154, gnl|echTel1|scaffold_114750 (1341-1494) | |
| 24-154, gnl|fr1|chrUn (264908444-264908588) | |
| 24-154, gnl|galGal2|chr14 (16849765-16849912) | |
| 24-154, gnl|hg17|chr20 (18397585-18397739) | |
| 24-154, gnl|Hg17|chr20 (18397588-18397717) | |
| 24-154, gnl|loxAfr1|scaffold_70200 (5355-5510) | |
| 24-154, gnl|mm7|chr2 (144269557-144269711) | |
| 24-154, gnl|Mm7|chr2 (144269560-144269689) | |
| 24-154, gnl|monDom2|scaffold_1 (53165691-53165851) | |
| 24-154, gnl|oryCun1|scaffold_187143 (47057-46903) | |
| 24-154, gnl|panTro1|chr21_random (2303764-2303610) | |
| 24-154, gnl|rheMac2|chr10 (51799902-51800056) | |
| 24-154, gnl|rn3|chr3 (132980901-132981055) | |
| 24-154, gnl|tetNig1|chrUn_random (47661472-47661600) | |
| 24-154, gnl|xenTro1|scaffold_658 (476208-476080) | |
| 412-556, gnl|bosTau2|chr13 (24243128-24243272) | |
| 412-556, gnl|canFam2|chr24 (7717316-7717166) | |
| 412-556, gnl|danRer3|chrUn (179151411-179151561) | |
| 412-556, gnl|dasNov1|scaffold_17609 (19417-19267) | |
| 412-556, gnl|echTel1|scaffold_251134 (3519-3648) | |
| 412-556, gnl|fr1|chrUn (264909475-264909625) | |
| 412-556, gnl|galGal2|chr14 (16853887-16854037) | |
| 412-556, gnl|hg17|chr20 (18408681-18408831) | |
| 412-556, gnl|Hg17|chr20 (18408682-18408826) | |
| 412-556, gnl|loxAfr1|scaffold_90670 (5995-6145) | |
| 412-556, gnl|mm7|chr2 (144276797-144276947) | |
| 412-556, gnl|Mm7|chr2 (144276798-144276942) | |
| 412-556, gnl|monDom2|scaffold_1 (53171466-53171616) | |
| 412-556, gnl|oryCun1|scaffold_187143 (39403-39253) | |
| 412-556, gnl|panTro1|chr21 (18288775-18288925) | |
| 412-556, gnl|rheMac2|chr10 (51811277-51811427) | |
| 412-556, gnl|rn3|chr3 (132990138-132990288) | |
| 412-556, gnl|tetNig1|chrUn_random (47663343-47663493) | |
| 412-556, gnl|xenTro1|scaffold_658 (472702-472553) | |
| 855-1446, gnl|bosTau2|chr13 (24245733-24246343) | |
| 855-1446, gnl|Hg17|chr20 (18412124-18412742) | |
| 855-1446, gnl|Mm7|chr2 (144279468-144280002) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 24-154, gnl|bosTau2|chr13 (24235009-24235138) | |
| 24-154, gnl|canFam2|chr24 (7725075-7724925) | |
| 24-154, gnl|danRer3|chrUn (179150088-179150217) | |
| 24-154, gnl|dasNov1|scaffold_120766 (1620-1466) | |
| 24-154, gnl|echTel1|scaffold_114750 (1341-1494) | |
| 24-154, gnl|fr1|chrUn (264908444-264908588) | |
| 24-154, gnl|galGal2|chr14 (16849765-16849912) | |
| 24-154, gnl|hg17|chr20 (18397585-18397739) | |
| 24-154, gnl|Hg17|chr20 (18397588-18397717) | |
| 24-154, gnl|loxAfr1|scaffold_70200 (5355-5510) | |
| 24-154, gnl|mm7|chr2 (144269557-144269711) | |
| 24-154, gnl|Mm7|chr2 (144269560-144269689) | |
| 24-154, gnl|monDom2|scaffold_1 (53165691-53165851) | |
| 24-154, gnl|oryCun1|scaffold_187143 (47057-46903) | |
| 24-154, gnl|panTro1|chr21_random (2303764-2303610) | |
| 24-154, gnl|rheMac2|chr10 (51799902-51800056) | |
| 24-154, gnl|rn3|chr3 (132980901-132981055) | |
| 24-154, gnl|tetNig1|chrUn_random (47661472-47661600) | |
| 24-154, gnl|xenTro1|scaffold_658 (476208-476080) | |
| 412-556, gnl|bosTau2|chr13 (24243128-24243272) | |
| 412-556, gnl|canFam2|chr24 (7717316-7717166) | |
| 412-556, gnl|danRer3|chrUn (179151411-179151561) | |
| 412-556, gnl|dasNov1|scaffold_17609 (19417-19267) | |
| 412-556, gnl|echTel1|scaffold_251134 (3519-3648) | |
| 412-556, gnl|fr1|chrUn (264909475-264909625) | |
| 412-556, gnl|galGal2|chr14 (16853887-16854037) | |
| 412-556, gnl|hg17|chr20 (18408681-18408831) | |
| 412-556, gnl|Hg17|chr20 (18408682-18408826) | |
| 412-556, gnl|loxAfr1|scaffold_90670 (5995-6145) | |
| 412-556, gnl|mm7|chr2 (144276797-144276947) | |
| 412-556, gnl|Mm7|chr2 (144276798-144276942) | |
| 412-556, gnl|monDom2|scaffold_1 (53171466-53171616) | |
| 412-556, gnl|oryCun1|scaffold_187143 (39403-39253) | |
| 412-556, gnl|panTro1|chr21 (18288775-18288925) | |
| 412-556, gnl|rheMac2|chr10 (51811277-51811427) | |
| 412-556, gnl|rn3|chr3 (132990138-132990288) | |
| 412-556, gnl|tetNig1|chrUn_random (47663343-47663493) | |
| 412-556, gnl|xenTro1|scaffold_658 (472702-472553) | |
| 855-1446, gnl|bosTau2|chr13 (24245733-24246343) | |
| 855-1446, gnl|Hg17|chr20 (18412124-18412742) | |
| 855-1446, gnl|Mm7|chr2 (144279468-144280002) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| cbl (0.688784) | |
| elu (0.385356) | |
| spl (0.286369) | |
| cut (0.169924) | |
| isp (0.150376) | |
| fat (0.147427) | |
| csk (0.140746) | |
| kid (0.129735) | |
| ova (0.129132) | |
| eep (0.122564) | |
| eru (0.120048) | |
| cty (0.10408) | |
| jej (0.0989218) | |
| ldo (0.0970026) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbl (0.688784) | |
| elu (0.385356) | |
| spl (0.286369) | |
| cut (0.169924) | |
| isp (0.150376) | |
| fat (0.147427) | |
| csk (0.140746) | |
| kid (0.129735) | |
| ova (0.129132) | |
| eep (0.122564) | |
| eru (0.120048) | |
| cty (0.10408) | |
| jej (0.0989218) | |
| ldo (0.0970026) |