Ss1.1-Thy1-THY010035G07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AACTCAAGATGGCGGACGAGAGTGAGACAGCAGTGAAGCCGCCGGCACCTCCGCTGCCGC AGATGATGGAAGGGAACGGAAACGGCCATGAACACTGCAGCGATTGCGAGAACGAGGAGG ACAACAGCTACAACCGGGGTGGTTTGAGTCCAGCCAATGACACTGGAGCCAAAAAGAAGA AAAAGAAACAAAAAAAGAAGAAAGAGAAAGGCAGTGAGACAGATTCGGCCCAGGATCAGC CTGTGAAGATGAACTCTTTGCCAGCAGAGAGGATCCAGGAAATACAGAAGGCCATAGAAC TTTTTTCAGTGGGTCAGGGACCTGCAAAAACCATGGAGGAGGCTAGCAAGCGAAGCTACC AGTTCTGGGACACGCAGCCCGTCCCCAAACTGGGAGAAGTCGTGAACACGCATGGTCCCG TGGAGCCTGATAAGGACAACATCCGCCAGGAGCCCTACACCCTGCCCCAGGGCTTCACCT GGGATGCCTTGGATCTTGGGGACCGTGGTGTGCTGAAAGAACTGTACACCCTCCTGAATG AGAATTATGTAGAAGATGATGACAACATGTTCCGATTTGATTATTCCCCTGAATTTCTTT TGTGGGCTCTCCGGCCGCCTGGCTGGCTCCCCCAGTGGCACTGTGGGGTTCGAGTGGTCT CAAGTCGGAAACTGGTTGGGTTCATCAGCGCCATCCCAGCAAACATCCATATCTATGACA CAGAGAAGAAGATGGTGGAGATCAACTTCCTTTGTGTCCACAAGAAGCTGCGCTCCAAGA GAGTAGCTCCAGTCCTGATCCGGGAGATAACCCGGCGGGTTCACCTGGAGGGCATCTTCC AAGCTGTTTACACTGCCGGGGTGGTATTACCAAAGCCCGTTGGCACCTGCAGGTACTGGC ATCGGTCCCTAAACCCACGGAAGCTGATTGAAGTGAAGTTCTCCCACCTGAGCAGAAATA TGACCATGCAGCGCACCATGAAGCTCTACCGCCTGCCAGAGACTCCCAAGACAGCTGGGC TACGACCAATGGAGAAGAAGGACATTCCAGTAGTGCACCAGCTCCTCACGCGGTACCTGA GGCAGTTCCACCTCACGCCGGTCATGAGCCAGGAGGAGGTGGAGCACTGGTTCTACCCCC AGGAGAATATCATCGATACTTTCG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AACTCAAGATGGCGGACGAGAGTGAGACAGCAGTGAAGCCGCCGGCACCTCCGCTGCCGC AGATGATGGAAGGGAACGGAAACGGCCATGAACACTGCAGCGATTGCGAGAACGAGGAGG ACAACAGCTACAACCGGGGTGGTTTGAGTCCAGCCAATGACACTGGAGCCAAAAAGAAGA AAAAGAAACAAAAAAAGAAGAAAGAGAAAGGCAGTGAGACAGATTCGGCCCAGGATCAGC CTGTGAAGATGAACTCTTTGCCAGCAGAGAGGATCCAGGAAATACAGAAGGCCATAGAAC TTTTTTCAGTGGGTCAGGGACCTGCAAAAACCATGGAGGAGGCTAGCAAGCGAAGCTACC AGTTCTGGGACACGCAGCCCGTCCCCAAACTGGGAGAAGTCGTGAACACGCATGGTCCCG TGGAGCCTGATAAGGACAACATCCGCCAGGAGCCCTACACCCTGCCCCAGGGCTTCACCT GGGATGCCTTGGATCTTGGGGACCGTGGTGTGCTGAAAGAACTGTACACCCTCCTGAATG AGAATTATGTAGAAGATGATGACAACATGTTCCGATTTGATTATTCCCCTGAATTTCTTT TGTGGGCTCTCCGGCCGCCTGGCTGGCTCCCCCAGTGGCACTGTGGGGTTCGAGTGGTCT CAAGTCGGAAACTGGTTGGGTTCATCAGCGCCATCCCAGCAAACATCCATATCTATGACA CAGAGAAGAAGATGGTGGAGATCAACTTCCTTTGTGTCCACAAGAAGCTGCGCTCCAAGA GAGTAGCTCCAGTCCTGATCCGGGAGATAACCCGGCGGGTTCACCTGGAGGGCATCTTCC AAGCTGTTTACACTGCCGGGGTGGTATTACCAAAGCCCGTTGGCACCTGCAGGTACTGGC ATCGGTCCCTAAACCCACGGAAGCTGATTGAAGTGAAGTTCTCCCACCTGAGCAGAAATA TGACCATGCAGCGCACCATGAAGCTCTACCGCCTGCCAGAGACTCCCAAGACAGCTGGGC TACGACCAATGGAGAAGAAGGACATTCCAGTAGTGCACCAGCTCCTCACGCGGTACCTGA GGCAGTTCCACCTCACGCCGGTCATGAGCCAGGAGGAGGTGGAGCACTGGTTCTACCCCC AGGAGAATATCATCGATACTTTCG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 719-1162, + strand, RNAz p=0.990885 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 719-1162, + strand, RNAz p=0.990885 |
| Aligned organism(s): 55 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
| 1-139, gnl|bosTau2|chr19 (37269497-37269359) | |
| 1-139, gnl|canFam2|chr9 (21772231-21772086) | |
| 1-139, gnl|dasNov1|scaffold_73339 (11249-11104) | |
| 1-139, gnl|galGal2|chr27 (1577135-1576993) | |
| 1-139, gnl|hg17|chr17 (40494212-40494357) | |
| 1-139, gnl|Hg17|chr17 (40494216-40494354) | |
| 1-139, gnl|loxAfr1|scaffold_35892 (29004-29149) | |
| 1-139, gnl|mm7|chr11 (103137601-103137746) | |
| 1-139, gnl|Mm7|chr11 (103137605-103137743) | |
| 1-139, gnl|monDom2|scaffold_18 (41407067-41406913) | |
| 1-139, gnl|oryCun1|scaffold_156202 (3632-3487) | |
| 1-139, gnl|panTro1|chr19 (43773833-43773978) | |
| 1-139, gnl|rheMac2|chr16 (55155347-55155492) | |
| 1-139, gnl|rn3|chr10 (92211377-92211522) | |
| 242-394, gnl|bosTau2|chr19 (37255407-37255255) | |
| 242-394, gnl|canFam2|chr9 (21757159-21757025) | |
| 242-394, gnl|danRer3|chrNA (59048435-59048569) | |
| 242-394, gnl|dasNov1|scaffold_69171 (319-209) | |
| 242-394, gnl|echTel1|scaffold_319213 (6550-6684) | |
| 242-394, gnl|fr1|chrUn (17542161-17542026) | |
| 242-394, gnl|galGal2|chr27 (1573035-1572897) | |
| 242-394, gnl|hg17|chr17 (40519389-40519523) | |
| 242-394, gnl|Hg17|chr17 (40519395-40519547) | |
| 242-394, gnl|loxAfr1|scaffold_14460 (41405-41270) | |
| 242-394, gnl|mm7|chr11 (103155409-103155541) | |
| 242-394, gnl|Mm7|chr11 (103155413-103155564) | |
| 242-394, gnl|monDom2|scaffold_18 (41381809-41381675) | |
| 242-394, gnl|oryCun1|scaffold_205221 (42962-43095) | |
| 242-394, gnl|panTro1|chr19 (43799083-43799217) | |
| 242-394, gnl|rheMac2|chr16 (55181474-55181608) | |
| 242-394, gnl|rn3|chr10 (92228461-92228593) | |
| 242-394, gnl|tetNig1|chr3 (13227057-13227180) | |
| 242-394, gnl|xenTro1|scaffold_221 (1357164-1357039) | |
| 719-895, gnl|bosTau2|chr19 (37245839-37245663) | |
| 719-895, gnl|canFam2|chr9 (21748824-21748646) | |
| 719-895, gnl|danRer3|chrNA (59053132-59053310) | |
| 719-895, gnl|dasNov1|scaffold_23623 (48475-48653) | |
| 719-895, gnl|echTel1|scaffold_319213 (11439-11617) | |
| 719-895, gnl|fr1|chrUn (17541233-17541055) | |
| 719-895, gnl|galGal2|chr27 (1570659-1570481) | |
| 719-895, gnl|hg17|chr17 (40531271-40531449) | |
| 719-895, gnl|Hg17|chr17 (40531273-40531449) | |
| 719-895, gnl|loxAfr1|scaffold_14460 (35247-35069) | |
| 719-895, gnl|mm7|chr11 (103166401-103166579) | |
| 719-895, gnl|Mm7|chr11 (103166403-103166579) | |
| 719-895, gnl|monDom2|scaffold_18 (41360949-41360771) | |
| 719-895, gnl|oryCun1|scaffold_205221 (51763-51941) | |
| 719-895, gnl|panTro1|chr19 (43810987-43811165) | |
| 719-895, gnl|rheMac2|chr16 (55193898-55194076) | |
| 719-895, gnl|rn3|chr10 (92235674-92235852) | |
| 719-895, gnl|tetNig1|chr3 (13227910-13228086) | |
| 719-895, gnl|xenTro1|scaffold_221 (1354848-1354670) | |
| 1000-1162, gnl|bosTau2|chr19 (37242030-37241868) | |
| 1000-1162, gnl|Hg17|chr17 (40535843-40536005) | |
| 1000-1162, gnl|Mm7|chr11 (103169117-103169279) |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-139, gnl|bosTau2|chr19 (37269497-37269359) | |
| 1-139, gnl|canFam2|chr9 (21772231-21772086) | |
| 1-139, gnl|dasNov1|scaffold_73339 (11249-11104) | |
| 1-139, gnl|galGal2|chr27 (1577135-1576993) | |
| 1-139, gnl|hg17|chr17 (40494212-40494357) | |
| 1-139, gnl|Hg17|chr17 (40494216-40494354) | |
| 1-139, gnl|loxAfr1|scaffold_35892 (29004-29149) | |
| 1-139, gnl|mm7|chr11 (103137601-103137746) | |
| 1-139, gnl|Mm7|chr11 (103137605-103137743) | |
| 1-139, gnl|monDom2|scaffold_18 (41407067-41406913) | |
| 1-139, gnl|oryCun1|scaffold_156202 (3632-3487) | |
| 1-139, gnl|panTro1|chr19 (43773833-43773978) | |
| 1-139, gnl|rheMac2|chr16 (55155347-55155492) | |
| 1-139, gnl|rn3|chr10 (92211377-92211522) | |
| 242-394, gnl|bosTau2|chr19 (37255407-37255255) | |
| 242-394, gnl|canFam2|chr9 (21757159-21757025) | |
| 242-394, gnl|danRer3|chrNA (59048435-59048569) | |
| 242-394, gnl|dasNov1|scaffold_69171 (319-209) | |
| 242-394, gnl|echTel1|scaffold_319213 (6550-6684) | |
| 242-394, gnl|fr1|chrUn (17542161-17542026) | |
| 242-394, gnl|galGal2|chr27 (1573035-1572897) | |
| 242-394, gnl|hg17|chr17 (40519389-40519523) | |
| 242-394, gnl|Hg17|chr17 (40519395-40519547) | |
| 242-394, gnl|loxAfr1|scaffold_14460 (41405-41270) | |
| 242-394, gnl|mm7|chr11 (103155409-103155541) | |
| 242-394, gnl|Mm7|chr11 (103155413-103155564) | |
| 242-394, gnl|monDom2|scaffold_18 (41381809-41381675) | |
| 242-394, gnl|oryCun1|scaffold_205221 (42962-43095) | |
| 242-394, gnl|panTro1|chr19 (43799083-43799217) | |
| 242-394, gnl|rheMac2|chr16 (55181474-55181608) | |
| 242-394, gnl|rn3|chr10 (92228461-92228593) | |
| 242-394, gnl|tetNig1|chr3 (13227057-13227180) | |
| 242-394, gnl|xenTro1|scaffold_221 (1357164-1357039) | |
| 719-895, gnl|bosTau2|chr19 (37245839-37245663) | |
| 719-895, gnl|canFam2|chr9 (21748824-21748646) | |
| 719-895, gnl|danRer3|chrNA (59053132-59053310) | |
| 719-895, gnl|dasNov1|scaffold_23623 (48475-48653) | |
| 719-895, gnl|echTel1|scaffold_319213 (11439-11617) | |
| 719-895, gnl|fr1|chrUn (17541233-17541055) | |
| 719-895, gnl|galGal2|chr27 (1570659-1570481) | |
| 719-895, gnl|hg17|chr17 (40531271-40531449) | |
| 719-895, gnl|Hg17|chr17 (40531273-40531449) | |
| 719-895, gnl|loxAfr1|scaffold_14460 (35247-35069) | |
| 719-895, gnl|mm7|chr11 (103166401-103166579) | |
| 719-895, gnl|Mm7|chr11 (103166403-103166579) | |
| 719-895, gnl|monDom2|scaffold_18 (41360949-41360771) | |
| 719-895, gnl|oryCun1|scaffold_205221 (51763-51941) | |
| 719-895, gnl|panTro1|chr19 (43810987-43811165) | |
| 719-895, gnl|rheMac2|chr16 (55193898-55194076) | |
| 719-895, gnl|rn3|chr10 (92235674-92235852) | |
| 719-895, gnl|tetNig1|chr3 (13227910-13228086) | |
| 719-895, gnl|xenTro1|scaffold_221 (1354848-1354670) | |
| 1000-1162, gnl|bosTau2|chr19 (37242030-37241868) | |
| 1000-1162, gnl|Hg17|chr17 (40535843-40536005) | |
| 1000-1162, gnl|Mm7|chr11 (103169117-103169279) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| pgl (0.236967) | |
| fcc (0.197785) | |
| ill (0.175593) | |
| cut (0.169924) | |
| nco (0.161734) | |
| eru (0.120048) | |
| med (0.116252) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pgl (0.236967) | |
| fcc (0.197785) | |
| ill (0.175593) | |
| cut (0.169924) | |
| nco (0.161734) | |
| eru (0.120048) | |
| med (0.116252) |