Non-Coding RNA Search

Ss1.1-Thy1-THY010036C11.5

Sequence:


               
               TTGCCTGCTGGATGGTTTTGGCAGGAGTTCCAAGGACCTGATCTTCCCTTACCACCACCT
GTGTCCCACTTCCTGCAGGAGGAGTTGGTGTTCTCACTAGTGTAATGTCAGCAGGGTCCA
GCAGCCAGCTGATCTGGGAGCATCCCAACCTGGGAGCAGTGAGACAGGATGAGGTGGTGT
GAGGCAGGGCTAGTCCCCACAAGCCTCCCTCTGCCCTGTGTCGGTGAGGTGCTGAGCCTT
CACCCTCACCCAGCATTAACAAGGCAAAACAAGGTGGTTGGAGGTGGCATGGTCAACACT
CCTCCCCCCCACCTTGTTGTAGGTCTGAGTGAGTAGTTGAGCCTCTAGCCCCATGTGGCA
TCTATAAGGTGGCACAGAGTGGTAGTTGGCAGGTCTGCTTGGCACTCCACTTCCCCCTGT
CCTCTTCCCCGCTGTCAGCTGGACCTTTCAGGCAGCTGAACTTTCCACTCTACCTTGAAG
CTGCGTGAGTCAACCCTCCACTTCCTCTCTTCCTGTTGTCAGTGGGGTCTGTCAGGGAGC
TGAGCTTACACCCCTACTCAGAGGCAATGAGGTGATGCAGGTTGGTGCCCCACTTTCACT
GAGAACAAGAGTAAAGCTGAACTTCCATCCCACCCATCTGCAGAAAAGCAATGTGAGTCA
TTGCTCCACTTTTGCCAGGGTGGTGTTGGCGGAGCCCAGCAGGAAGCTGAACATACACAC
TCAGCCTGCTCTCACACTACACCTCAATTGGTAGACTGCCTGCTAGGAAAGATTAAATAG
GATCCAGAGTCTTAAAATCTCCAAAATGTCCTTTATACAGTTGAAATT------------
------------------------------------------------------------
------------------------------------------------------------
------------AGACATTCAAAACAAATGAAAAATTAATCTCAAAAA------------
------------------------------------------------GGGTTCAGTAGA
AGAATGGAGATGACTGGGAAGAGTCAATAAAATTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGCCTGCTGGATGGTTTTGGCAGGAGTTCCAAGGACCTGATCTTCCCTTACCACCACCT
GTGTCCCACTTCCTGCAGGAGGAGTTGGTGTTCTCACTAGTGTAATGTCAGCAGGGTCCA
GCAGCCAGCTGATCTGGGAGCATCCCAACCTGGGAGCAGTGAGACAGGATGAGGTGGTGT
GAGGCAGGGCTAGTCCCCACAAGCCTCCCTCTGCCCTGTGTCGGTGAGGTGCTGAGCCTT
CACCCTCACCCAGCATTAACAAGGCAAAACAAGGTGGTTGGAGGTGGCATGGTCAACACT
CCTCCCCCCCACCTTGTTGTAGGTCTGAGTGAGTAGTTGAGCCTCTAGCCCCATGTGGCA
TCTATAAGGTGGCACAGAGTGGTAGTTGGCAGGTCTGCTTGGCACTCCACTTCCCCCTGT
CCTCTTCCCCGCTGTCAGCTGGACCTTTCAGGCAGCTGAACTTTCCACTCTACCTTGAAG
CTGCGTGAGTCAACCCTCCACTTCCTCTCTTCCTGTTGTCAGTGGGGTCTGTCAGGGAGC
TGAGCTTACACCCCTACTCAGAGGCAATGAGGTGATGCAGGTTGGTGCCCCACTTTCACT
GAGAACAAGAGTAAAGCTGAACTTCCATCCCACCCATCTGCAGAAAAGCAATGTGAGTCA
TTGCTCCACTTTTGCCAGGGTGGTGTTGGCGGAGCCCAGCAGGAAGCTGAACATACACAC
TCAGCCTGCTCTCACACTACACCTCAATTGGTAGACTGCCTGCTAGGAAAGATTAAATAG
GATCCAGAGTCTTAAAATCTCCAAAATGTCCTTTATACAGTTGAAATT------------
------------------------------------------------------------
------------------------------------------------------------
------------AGACATTCAAAACAAATGAAAAATTAATCTCAAAAA------------
------------------------------------------------GGGTTCAGTAGA
AGAATGGAGATGACTGGGAAGAGTCAATAAAATTGA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               196-313, - strand, RNAz p=0.849447
               

               
               584-743, - strand, RNAz p=0.725891

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               196-313, - strand, RNAz p=0.849447
               

               
               584-743, - strand, RNAz p=0.725891

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               301-417, - strand, RNAmicro p=0.997737

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               301-417, - strand, RNAmicro p=0.997737

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               4-828, gnl|bosTau2|chrX (38393328-38394147)
               

               
               4-828, gnl|Hg17|chrX (20030894-20030132)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-828, gnl|bosTau2|chrX (38393328-38394147)
               

               
               4-828, gnl|Hg17|chrX (20030894-20030132)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ldo (0.0970026)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ldo (0.0970026)

	196-313, - strand, RNAz p=0.849447
	584-743, - strand, RNAz p=0.725891

	4-828, gnl\|bosTau2\|chrX (38393328-38394147)
	4-828, gnl\|Hg17\|chrX (20030894-20030132)