Ss1.1-Thy1-THY010036G04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGTTTCCCGGCGGCGCGCGCAGTCCGGCTGGGTTGGACAGGGTGTGAGGATCCGAGCGC GGGGTACGTCCGGCCGGCAGCCGGAAGGAGGGCGCGCGCCGGACCCTGGCCGTGCAGCCA TGAACCTGGAGCGGCTGCGGAAGCGCGTCCGGCAGTACCTGGACCAGCAACAGTATCAGA GTGCTCTATTTTGGGCAGATAAAGTAGCTTCACTTTCTCATGAGGAACCCCAGGACATTT ACTGGTTGGCTCAGTGTCTTTACCTGACAGCGCAGTATCATAGAGCAGCTCATGCACTTC GGTCACGGAAACTGGACAAATTGTATGAAGCGTGTCGCTACCTTGCAGCTAGATGCCATT TTGCTGCTAAAGAACATCAGCAGGCTCTTGATATTCTTGATATGGAGGAGCCGATCAACA AAAGGCTATTTGAGAAATGCTTAAAGGATGAAAGTGGCTTGAAAGACCCCTCCAGTGACT GGGAAATGTCACAGTCCTCAATAAAGAGTTCTATTTGTCTTTTACGAGGGAAAATCTACG ATGCTCTAGATAACCGAACTCTTGCTACCTACAGCTATAAGGAAGCTTTGAAGCTTGATG TCTACTGCTTTGAAGCATTTGATTTGTTAACATCACACCACATGTTGACAGCCCAAGAAG AAAAAGAACTTCTTGAATCACTACCTCTTAGCAAACTCTGTACTGAAGAGCAAGAATTGC TGCGTTTTCTATTCGAGAACAAATATTCGAGAACAAATTAAAAAAGTATAATAAGCCCAG TGAAAGTGTTATTCCTGAGTCTGTAGATGGTTTGCAGGAGAATCTGGATGTGGTCGTGTC TTTAGCCGAAAGACATTATTATAACTGTGATTTTAAAATGTGCTACAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGTTTCCCGGCGGCGCGCGCAGTCCGGCTGGGTTGGACAGGGTGTGAGGATCCGAGCGC GGGGTACGTCCGGCCGGCAGCCGGAAGGAGGGCGCGCGCCGGACCCTGGCCGTGCAGCCA TGAACCTGGAGCGGCTGCGGAAGCGCGTCCGGCAGTACCTGGACCAGCAACAGTATCAGA GTGCTCTATTTTGGGCAGATAAAGTAGCTTCACTTTCTCATGAGGAACCCCAGGACATTT ACTGGTTGGCTCAGTGTCTTTACCTGACAGCGCAGTATCATAGAGCAGCTCATGCACTTC GGTCACGGAAACTGGACAAATTGTATGAAGCGTGTCGCTACCTTGCAGCTAGATGCCATT TTGCTGCTAAAGAACATCAGCAGGCTCTTGATATTCTTGATATGGAGGAGCCGATCAACA AAAGGCTATTTGAGAAATGCTTAAAGGATGAAAGTGGCTTGAAAGACCCCTCCAGTGACT GGGAAATGTCACAGTCCTCAATAAAGAGTTCTATTTGTCTTTTACGAGGGAAAATCTACG ATGCTCTAGATAACCGAACTCTTGCTACCTACAGCTATAAGGAAGCTTTGAAGCTTGATG TCTACTGCTTTGAAGCATTTGATTTGTTAACATCACACCACATGTTGACAGCCCAAGAAG AAAAAGAACTTCTTGAATCACTACCTCTTAGCAAACTCTGTACTGAAGAGCAAGAATTGC TGCGTTTTCTATTCGAGAACAAATATTCGAGAACAAATTAAAAAAGTATAATAAGCCCAG TGAAAGTGTTATTCCTGAGTCTGTAGATGGTTTGCAGGAGAATCTGGATGTGGTCGTGTC TTTAGCCGAAAGACATTATTATAACTGTGATTTTAAAATGTGCTACAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 360-504, - strand, RNAz p=0.63353 | |
| 397-504, - strand, RNAz p=0.899362 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 360-504, - strand, RNAz p=0.63353 | |
| 397-504, - strand, RNAz p=0.899362 |
| Aligned organism(s): 47 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
| 1-167, gnl|bosTau2|chr12 (47851710-47851547) | |
| 1-167, gnl|Hg17|chr13 (114018462-114018709) | |
| 1-167, gnl|Mm7|chr8 (13731906-13732074) | |
| 217-328, gnl|bosTau2|chr12 (47850307-47850196) | |
| 217-328, gnl|canFam2|chr22 (64246290-64246417) | |
| 217-328, gnl|danRer3|chr9 (31869088-31868963) | |
| 217-328, gnl|dasNov1|scaffold_56695 (3878-3748) | |
| 217-328, gnl|echTel1|scaffold_284402 (3318-3448) | |
| 217-328, gnl|fr1|chrUn (184396882-184396986) | |
| 217-328, gnl|galGal2|chr1 (129968807-129968676) | |
| 217-328, gnl|hg17|chr13 (114020364-114020495) | |
| 217-328, gnl|Hg17|chr13 (114020370-114020481) | |
| 217-328, gnl|loxAfr1|scaffold_43726 (5020-5149) | |
| 217-328, gnl|mm7|chr8 (13733348-13733464) | |
| 217-328, gnl|Mm7|chr8 (13733354-13733464) | |
| 217-328, gnl|monDom2|scaffold_11 (30299447-30299310) | |
| 217-328, gnl|oryCun1|scaffold_183612 (860-995) | |
| 217-328, gnl|panTro1|chr14 (97674517-97674648) | |
| 217-328, gnl|rheMac2|chr17 (94326280-94326411) | |
| 217-328, gnl|rn3|chr16 (80649847-80649718) | |
| 217-328, gnl|tetNig1|chr2 (7536113-7536009) | |
| 217-328, gnl|xenTro1|scaffold_5943 (4624-4493) | |
| 360-504, gnl|bosTau2|chr12 (47848630-47848486) | |
| 360-504, gnl|canFam2|chr22 (64247788-64247962) | |
| 360-504, gnl|danRer3|chr9 (31867038-31866875) | |
| 360-504, gnl|dasNov1|scaffold_56695 (2001-1827) | |
| 360-504, gnl|echTel1|scaffold_284402 (4939-5114) | |
| 360-504, gnl|fr1|chrUn (184397211-184397390) | |
| 360-504, gnl|galGal2|chr1 (129967559-129967377) | |
| 360-504, gnl|hg17|chr13 (114022907-114023081) | |
| 360-504, gnl|Hg17|chr13 (114022927-114023071) | |
| 360-504, gnl|loxAfr1|scaffold_43726 (6712-6887) | |
| 360-504, gnl|mm7|chr8 (13735177-13735350) | |
| 360-504, gnl|Mm7|chr8 (13735197-13735341) | |
| 360-504, gnl|monDom2|scaffold_11 (30298205-30298039) | |
| 360-504, gnl|oryCun1|scaffold_183612 (2142-2314) | |
| 360-504, gnl|panTro1|chr14 (97677184-97677358) | |
| 360-504, gnl|rheMac2|chr17 (94328580-94328754) | |
| 360-504, gnl|rn3|chr16 (80648079-80647931) | |
| 360-504, gnl|tetNig1|chr2 (7535726-7535570) | |
| 360-504, gnl|xenTro1|scaffold_5943 (3543-3376) | |
| 659-763, gnl|bosTau2|chr12 (47845519-47845415) | |
| 659-763, gnl|Hg17|chr13 (114026832-114026936) | |
| 659-763, gnl|Mm7|chr8 (13738038-13738141) | |
| 765-888, gnl|bosTau2|chr12 (47844856-47844733) | |
| 765-888, gnl|Hg17|chr13 (114027431-114027554) | |
| 765-888, gnl|Mm7|chr8 (13738787-13738910) |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-167, gnl|bosTau2|chr12 (47851710-47851547) | |
| 1-167, gnl|Hg17|chr13 (114018462-114018709) | |
| 1-167, gnl|Mm7|chr8 (13731906-13732074) | |
| 217-328, gnl|bosTau2|chr12 (47850307-47850196) | |
| 217-328, gnl|canFam2|chr22 (64246290-64246417) | |
| 217-328, gnl|danRer3|chr9 (31869088-31868963) | |
| 217-328, gnl|dasNov1|scaffold_56695 (3878-3748) | |
| 217-328, gnl|echTel1|scaffold_284402 (3318-3448) | |
| 217-328, gnl|fr1|chrUn (184396882-184396986) | |
| 217-328, gnl|galGal2|chr1 (129968807-129968676) | |
| 217-328, gnl|hg17|chr13 (114020364-114020495) | |
| 217-328, gnl|Hg17|chr13 (114020370-114020481) | |
| 217-328, gnl|loxAfr1|scaffold_43726 (5020-5149) | |
| 217-328, gnl|mm7|chr8 (13733348-13733464) | |
| 217-328, gnl|Mm7|chr8 (13733354-13733464) | |
| 217-328, gnl|monDom2|scaffold_11 (30299447-30299310) | |
| 217-328, gnl|oryCun1|scaffold_183612 (860-995) | |
| 217-328, gnl|panTro1|chr14 (97674517-97674648) | |
| 217-328, gnl|rheMac2|chr17 (94326280-94326411) | |
| 217-328, gnl|rn3|chr16 (80649847-80649718) | |
| 217-328, gnl|tetNig1|chr2 (7536113-7536009) | |
| 217-328, gnl|xenTro1|scaffold_5943 (4624-4493) | |
| 360-504, gnl|bosTau2|chr12 (47848630-47848486) | |
| 360-504, gnl|canFam2|chr22 (64247788-64247962) | |
| 360-504, gnl|danRer3|chr9 (31867038-31866875) | |
| 360-504, gnl|dasNov1|scaffold_56695 (2001-1827) | |
| 360-504, gnl|echTel1|scaffold_284402 (4939-5114) | |
| 360-504, gnl|fr1|chrUn (184397211-184397390) | |
| 360-504, gnl|galGal2|chr1 (129967559-129967377) | |
| 360-504, gnl|hg17|chr13 (114022907-114023081) | |
| 360-504, gnl|Hg17|chr13 (114022927-114023071) | |
| 360-504, gnl|loxAfr1|scaffold_43726 (6712-6887) | |
| 360-504, gnl|mm7|chr8 (13735177-13735350) | |
| 360-504, gnl|Mm7|chr8 (13735197-13735341) | |
| 360-504, gnl|monDom2|scaffold_11 (30298205-30298039) | |
| 360-504, gnl|oryCun1|scaffold_183612 (2142-2314) | |
| 360-504, gnl|panTro1|chr14 (97677184-97677358) | |
| 360-504, gnl|rheMac2|chr17 (94328580-94328754) | |
| 360-504, gnl|rn3|chr16 (80648079-80647931) | |
| 360-504, gnl|tetNig1|chr2 (7535726-7535570) | |
| 360-504, gnl|xenTro1|scaffold_5943 (3543-3376) | |
| 659-763, gnl|bosTau2|chr12 (47845519-47845415) | |
| 659-763, gnl|Hg17|chr13 (114026832-114026936) | |
| 659-763, gnl|Mm7|chr8 (13738038-13738141) | |
| 765-888, gnl|bosTau2|chr12 (47844856-47844733) | |
| 765-888, gnl|Hg17|chr13 (114027431-114027554) | |
| 765-888, gnl|Mm7|chr8 (13738787-13738910) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spl (0.143184) | |
| eje (0.0988338) |