Ss1.1-Thy1-THY010037B02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAGAGTAAGGGCGAGGGGAGAGTGAAGGTGGTGAAGGGCTCAGCGCCTCCCCGCCAGGC GGTGGCCTAGAGGAGCAGTTTCGGCAGGCGGGTGAGGTCGCTGAGGGCCCGGAAAAGATG TTTTCCCTGTCGAGTACCGTGCAGCCCCAGGTTACTGTTCCTCTGAGTCATCTAATCAAT GCCTTCCATTCACCAAAAAATACGTCTATTTCTGTCAGTGCATCGTTTTCTCAAAACCAA CATCGAGATGTAGTTCCTGAGCATGAGGCTCCCAGCAGTGAGCCTATACTTAACTTAAGA GACCTTGGATTATCTGAATTAAAAATTGGACAGATTGATCAACTGGTAGACAGTCTACTT CCTGGATTTTGTAAAGGCAAGAATGTTTCTTCCCATTGGCATACATCTCATGTTTCTGCA CAGTCCTTCTTTGAAAATAAATATGGTTCCTTAGATATATTTAGTACTTTACGTTCCTCT TGCTTGTACAGACAACATTCAAGAACTCTTAAAAGAATTTGTTCAGATCTTCAGTACTGG CCAGTTTTTGTACAGTCTCGGGGTTTTAAAACTTTGAAATCAAGGACACGACGTCTGCAG TCCACCTCTGAAAGATTAGCAGAAACACAGCATACAGCACCATCATTCGTAAAGGGGTTT CTTTTGCGGGACAGAGGATCAGACATTGAGAGTTTAGACAAACTCATGAAAACCAAAAAC ATACCTGAAGCTCATCAAGATGCTTTTAAAACTGGTTTTGCAGAGGGTTTTCTGAAAGCT CAGGCACTAACACAAAAAACCAATGATTCTCTAAGAAGAACTCGTCTGATTGTCTTTATT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAGAGTAAGGGCGAGGGGAGAGTGAAGGTGGTGAAGGGCTCAGCGCCTCCCCGCCAGGC GGTGGCCTAGAGGAGCAGTTTCGGCAGGCGGGTGAGGTCGCTGAGGGCCCGGAAAAGATG TTTTCCCTGTCGAGTACCGTGCAGCCCCAGGTTACTGTTCCTCTGAGTCATCTAATCAAT GCCTTCCATTCACCAAAAAATACGTCTATTTCTGTCAGTGCATCGTTTTCTCAAAACCAA CATCGAGATGTAGTTCCTGAGCATGAGGCTCCCAGCAGTGAGCCTATACTTAACTTAAGA GACCTTGGATTATCTGAATTAAAAATTGGACAGATTGATCAACTGGTAGACAGTCTACTT CCTGGATTTTGTAAAGGCAAGAATGTTTCTTCCCATTGGCATACATCTCATGTTTCTGCA CAGTCCTTCTTTGAAAATAAATATGGTTCCTTAGATATATTTAGTACTTTACGTTCCTCT TGCTTGTACAGACAACATTCAAGAACTCTTAAAAGAATTTGTTCAGATCTTCAGTACTGG CCAGTTTTTGTACAGTCTCGGGGTTTTAAAACTTTGAAATCAAGGACACGACGTCTGCAG TCCACCTCTGAAAGATTAGCAGAAACACAGCATACAGCACCATCATTCGTAAAGGGGTTT CTTTTGCGGGACAGAGGATCAGACATTGAGAGTTTAGACAAACTCATGAAAACCAAAAAC ATACCTGAAGCTCATCAAGATGCTTTTAAAACTGGTTTTGCAGAGGGTTTTCTGAAAGCT CAGGCACTAACACAAAAAACCAATGATTCTCTAAGAAGAACTCGTCTGATTGTCTTTATT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 3-141, - strand, RNAz p=0.996047 | |
| 3-144, - strand, RNAz p=0.992559 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 3-141, - strand, RNAz p=0.996047 | |
| 3-144, - strand, RNAz p=0.992559 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of BC019602, - |
| Aligned organism(s): 49 entry(ies) | More info |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
| 3-152, gnl|bosTau2|chr13 (9458874-9459025) | |
| 3-152, gnl|canFam2|chr2 (9719818-9719981) | |
| 3-152, gnl|dasNov1|scaffold_78217 (1271-1106) | |
| 3-152, gnl|echTel1|scaffold_279585 (8892-8722) | |
| 3-152, gnl|hg17|chr10 (27483113-27483287) | |
| 3-152, gnl|Hg17|chr10 (27483267-27483111) | |
| 3-152, gnl|loxAfr1|scaffold_13137 (65967-66140) | |
| 3-152, gnl|mm7|chr2 (23164044-23163863) | |
| 3-152, gnl|Mm7|chr2 (23163882-23164044) | |
| 3-152, gnl|monDom2|scaffold_7 (41394634-41394821) | |
| 3-152, gnl|oryCun1|scaffold_204112 (78514-78341) | |
| 3-152, gnl|panTro1|chr8 (27753833-27754007) | |
| 3-152, gnl|rheMac2|chr9 (27222897-27223071) | |
| 3-152, gnl|rn3|chr17 (96769667-96769487) | |
| 281-462, gnl|bosTau2|chr13 (9471471-9471651) | |
| 281-462, gnl|Hg17|chr10 (27474527-27474347) | |
| 281-462, gnl|Mm7|chr2 (23169810-23169984) | |
| 653-805, gnl|bosTau2|chr13 (9473823-9473975) | |
| 653-805, gnl|canFam2|chr2 (9698468-9698307) | |
| 653-805, gnl|canFam2|chr2 (9698283-9698470) | |
| 653-805, gnl|danRer3|chrNA (167585871-167585707) | |
| 653-805, gnl|danRer3|chrNA (167585687-167585855) | |
| 653-805, gnl|dasNov1|scaffold_87034 (3448-3287) | |
| 653-805, gnl|dasNov1|scaffold_87034 (3288-3450) | |
| 653-805, gnl|echTel1|scaffold_271888 (4048-3887) | |
| 653-805, gnl|echTel1|scaffold_271888 (3863-4049) | |
| 653-805, gnl|fr1|chrUn (134015559-134015731) | |
| 653-805, gnl|galGal2|chr2 (15263159-15263334) | |
| 653-805, gnl|hg17|chr10 (27463748-27463935) | |
| 653-805, gnl|Hg17|chr10 (27463918-27463766) | |
| 653-805, gnl|hg17|chr14 (18409390-18409551) | |
| 653-805, gnl|loxAfr1|scaffold_2697 (9590-9751) | |
| 653-805, gnl|loxAfr1|scaffold_2697 (9774-9588) | |
| 653-805, gnl|mm7|chr2 (23180252-23180413) | |
| 653-805, gnl|mm7|chr2 (23180427-23180249) | |
| 653-805, gnl|Mm7|chr2 (23180265-23180417) | |
| 653-805, gnl|monDom2|scaffold_7 (41381208-41381050) | |
| 653-805, gnl|monDom2|scaffold_7 (41381026-41381210) | |
| 653-805, gnl|oryCun1|scaffold_133402 (11817-11656) | |
| 653-805, gnl|oryCun1|scaffold_133402 (11632-11819) | |
| 653-805, gnl|panTro1|chr8 (27734523-27734362) | |
| 653-805, gnl|panTro1|chr8 (27734338-27734525) | |
| 653-805, gnl|rheMac2|chr9 (37389968-37389820) | |
| 653-805, gnl|rheMac2|chr9 (27201442-27201629) | |
| 653-805, gnl|rn3|chr17 (96784561-96784719) | |
| 653-805, gnl|rn3|chr17 (96784733-96784555) | |
| 653-805, gnl|tetNig1|chr15 (2614935-2615080) | |
| 653-805, gnl|tetNig1|chr6 (5564836-5564995) | |
| 653-805, gnl|xenTro1|scaffold_42 (798623-798795) |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-152, gnl|bosTau2|chr13 (9458874-9459025) | |
| 3-152, gnl|canFam2|chr2 (9719818-9719981) | |
| 3-152, gnl|dasNov1|scaffold_78217 (1271-1106) | |
| 3-152, gnl|echTel1|scaffold_279585 (8892-8722) | |
| 3-152, gnl|hg17|chr10 (27483113-27483287) | |
| 3-152, gnl|Hg17|chr10 (27483267-27483111) | |
| 3-152, gnl|loxAfr1|scaffold_13137 (65967-66140) | |
| 3-152, gnl|mm7|chr2 (23164044-23163863) | |
| 3-152, gnl|Mm7|chr2 (23163882-23164044) | |
| 3-152, gnl|monDom2|scaffold_7 (41394634-41394821) | |
| 3-152, gnl|oryCun1|scaffold_204112 (78514-78341) | |
| 3-152, gnl|panTro1|chr8 (27753833-27754007) | |
| 3-152, gnl|rheMac2|chr9 (27222897-27223071) | |
| 3-152, gnl|rn3|chr17 (96769667-96769487) | |
| 281-462, gnl|bosTau2|chr13 (9471471-9471651) | |
| 281-462, gnl|Hg17|chr10 (27474527-27474347) | |
| 281-462, gnl|Mm7|chr2 (23169810-23169984) | |
| 653-805, gnl|bosTau2|chr13 (9473823-9473975) | |
| 653-805, gnl|canFam2|chr2 (9698468-9698307) | |
| 653-805, gnl|canFam2|chr2 (9698283-9698470) | |
| 653-805, gnl|danRer3|chrNA (167585871-167585707) | |
| 653-805, gnl|danRer3|chrNA (167585687-167585855) | |
| 653-805, gnl|dasNov1|scaffold_87034 (3448-3287) | |
| 653-805, gnl|dasNov1|scaffold_87034 (3288-3450) | |
| 653-805, gnl|echTel1|scaffold_271888 (4048-3887) | |
| 653-805, gnl|echTel1|scaffold_271888 (3863-4049) | |
| 653-805, gnl|fr1|chrUn (134015559-134015731) | |
| 653-805, gnl|galGal2|chr2 (15263159-15263334) | |
| 653-805, gnl|hg17|chr10 (27463748-27463935) | |
| 653-805, gnl|Hg17|chr10 (27463918-27463766) | |
| 653-805, gnl|hg17|chr14 (18409390-18409551) | |
| 653-805, gnl|loxAfr1|scaffold_2697 (9590-9751) | |
| 653-805, gnl|loxAfr1|scaffold_2697 (9774-9588) | |
| 653-805, gnl|mm7|chr2 (23180252-23180413) | |
| 653-805, gnl|mm7|chr2 (23180427-23180249) | |
| 653-805, gnl|Mm7|chr2 (23180265-23180417) | |
| 653-805, gnl|monDom2|scaffold_7 (41381208-41381050) | |
| 653-805, gnl|monDom2|scaffold_7 (41381026-41381210) | |
| 653-805, gnl|oryCun1|scaffold_133402 (11817-11656) | |
| 653-805, gnl|oryCun1|scaffold_133402 (11632-11819) | |
| 653-805, gnl|panTro1|chr8 (27734523-27734362) | |
| 653-805, gnl|panTro1|chr8 (27734338-27734525) | |
| 653-805, gnl|rheMac2|chr9 (37389968-37389820) | |
| 653-805, gnl|rheMac2|chr9 (27201442-27201629) | |
| 653-805, gnl|rn3|chr17 (96784561-96784719) | |
| 653-805, gnl|rn3|chr17 (96784733-96784555) | |
| 653-805, gnl|tetNig1|chr15 (2614935-2615080) | |
| 653-805, gnl|tetNig1|chr6 (5564836-5564995) | |
| 653-805, gnl|xenTro1|scaffold_42 (798623-798795) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tbr (0.154178) | |
| eru (0.120048) | |
| cty (0.10408) |