Non-Coding RNA Search

Ss1.1-Thy1-THY010037G06.5

Sequence:


               
               GGAGCTGAGAGGTGTGCTGGAGGGTTAAGCAGTGAGAGACTTCGGCGGCCATGGCTCCCA
ACGTGACCGCCTCCGAACCGGCCCAAGAGGGTCCTAAAGGCATCCGGGCCGTGCTGCTGG
GGCCGCCCGGGGCCGGCAAAGGTACTCAGGCACCCAGATTGGCTGAAAACTTCTGCGTCT
GCCATTTGGCCACTGGGGATATGTTGAGGGCCATGGTGGCTTCTGGCTCAGAGCTGGGAA
AAAAGCTGAAGGCAACTATGGATGCTGGGAAACTGGTGAGTGATGAGATGGTCGTGGAGC
TCATTGAGAAGAATTTGGAGACCCCTCCATGCAAAAATGGTTTTCTCCTTGATGGCTTCC
CTCGGACCGTGAGGCAGGCGGAAATGCTTGATGACCTCATGGAGAAGAGGAAAGAGAAGC
TCGATTCTGTGATTGAATTCAGCATCCCAGACGCTCTGCTGATCCGGAGAATCACAGGAA
GACTGATTCACCCCAAGAGTGGCCGTTCCTACCATGAGGAGTTCAACCCCCCGAAGGAGC
CCATGAAAGATGACATCACCGGGGAACCCTTGATCCGCCGATCAGATGATAATGAGAAGG
CCTTGAAAATCCGCCTGGAGGCCTACCACACTCAGACTACCCCGCTGGTGGAATACTACA
GCAAACGGGGCATCCACTCTGCCATCGACGCATCCCAGACCCCTGATGTCGTGTTTGCAA
GCATCCTAGCAGCCTTCTCCAAAGCCACATGTAAAGACTTGGTTATGTTTATTTAATGTT
GAGTCCAAAAAGGAATTTCTTTCTTCTTCCTGTCCCTGCTGAGAAAGTGGGTGGGAATGG
CAGAGCAGACAGAGGGAAGCTTCCTCAGGCCAGCAAGAATATCATTTGGTGTATTGATTA
AAAAGCACTTTTGTGAAGCGATTTCTTTTACATAGAGTAGGAATCTTAAAAATTAGAAGC
AAAGGGAAAAATTAATTTTTTAAAACATGGATTGGAAGGTGTAAGTAGAAACAGGGAGTT
GCAGTATTATTTCTAAGGAATCATGTTTTCATGTACTCTGGACTGGTGACAATGTTTTTT
TAAAGCCAGTGTCCTAAGACCTCACTTTTATCAGACCTCATGCCAGCCCAGGAATGCAGG
CCATCACACTGCTGTCCTGTCTGTCCTGTAGCTTGGAACAGGGCAGGAGCCGACTGCTCA
CCCTGGTTCCCCACACTGTGAGACCAAGAAATCATCTCCGCATTTGAAAAAGATACGGGT
GTTTTCCTGGGGCCGGTGGCTCAGCAAATCAGGTTTACTGGGGTCATGGGGCAGGAGGGG
CAGGCTAGTCTCACTCCCTTCCTGACTCACCTGCCCACCTGCTCTGGCGGGTAATCTCTC
TGCCACCACCCAGCATGTGCCACGATCCTACACTCTTGCCTTCCTCCATCCATGATGTGT
GAAGGGACTCCTTTTAATAAATGAACAAGTGTCCTAAGCAACATTATCCAAAGATCGTCC
TTTCCATCCTCAAATCCTGTGACTGGGATCACTCGACAGCACTGTGATGTATTATTTTCA
ATGAGGTGCCTTTCTTACCGGTCCAAATGCTGCCTTGTTTGGCCCCTAAATTAATAAAGC
GTGTTAAAAGTTTGTAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGCTGAGAGGTGTGCTGGAGGGTTAAGCAGTGAGAGACTTCGGCGGCCATGGCTCCCA
ACGTGACCGCCTCCGAACCGGCCCAAGAGGGTCCTAAAGGCATCCGGGCCGTGCTGCTGG
GGCCGCCCGGGGCCGGCAAAGGTACTCAGGCACCCAGATTGGCTGAAAACTTCTGCGTCT
GCCATTTGGCCACTGGGGATATGTTGAGGGCCATGGTGGCTTCTGGCTCAGAGCTGGGAA
AAAAGCTGAAGGCAACTATGGATGCTGGGAAACTGGTGAGTGATGAGATGGTCGTGGAGC
TCATTGAGAAGAATTTGGAGACCCCTCCATGCAAAAATGGTTTTCTCCTTGATGGCTTCC
CTCGGACCGTGAGGCAGGCGGAAATGCTTGATGACCTCATGGAGAAGAGGAAAGAGAAGC
TCGATTCTGTGATTGAATTCAGCATCCCAGACGCTCTGCTGATCCGGAGAATCACAGGAA
GACTGATTCACCCCAAGAGTGGCCGTTCCTACCATGAGGAGTTCAACCCCCCGAAGGAGC
CCATGAAAGATGACATCACCGGGGAACCCTTGATCCGCCGATCAGATGATAATGAGAAGG
CCTTGAAAATCCGCCTGGAGGCCTACCACACTCAGACTACCCCGCTGGTGGAATACTACA
GCAAACGGGGCATCCACTCTGCCATCGACGCATCCCAGACCCCTGATGTCGTGTTTGCAA
GCATCCTAGCAGCCTTCTCCAAAGCCACATGTAAAGACTTGGTTATGTTTATTTAATGTT
GAGTCCAAAAAGGAATTTCTTTCTTCTTCCTGTCCCTGCTGAGAAAGTGGGTGGGAATGG
CAGAGCAGACAGAGGGAAGCTTCCTCAGGCCAGCAAGAATATCATTTGGTGTATTGATTA
AAAAGCACTTTTGTGAAGCGATTTCTTTTACATAGAGTAGGAATCTTAAAAATTAGAAGC
AAAGGGAAAAATTAATTTTTTAAAACATGGATTGGAAGGTGTAAGTAGAAACAGGGAGTT
GCAGTATTATTTCTAAGGAATCATGTTTTCATGTACTCTGGACTGGTGACAATGTTTTTT
TAAAGCCAGTGTCCTAAGACCTCACTTTTATCAGACCTCATGCCAGCCCAGGAATGCAGG
CCATCACACTGCTGTCCTGTCTGTCCTGTAGCTTGGAACAGGGCAGGAGCCGACTGCTCA
CCCTGGTTCCCCACACTGTGAGACCAAGAAATCATCTCCGCATTTGAAAAAGATACGGGT
GTTTTCCTGGGGCCGGTGGCTCAGCAAATCAGGTTTACTGGGGTCATGGGGCAGGAGGGG
CAGGCTAGTCTCACTCCCTTCCTGACTCACCTGCCCACCTGCTCTGGCGGGTAATCTCTC
TGCCACCACCCAGCATGTGCCACGATCCTACACTCTTGCCTTCCTCCATCCATGATGTGT
GAAGGGACTCCTTTTAATAAATGAACAAGTGTCCTAAGCAACATTATCCAAAGATCGTCC
TTTCCATCCTCAAATCCTGTGACTGGGATCACTCGACAGCACTGTGATGTATTATTTTCA
ATGAGGTGCCTTTCTTACCGGTCCAAATGCTGCCTTGTTTGGCCCCTAAATTAATAAAGC
GTGTTAAAAGTTTGTAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|217606|dbj|BAA14110.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|217606|dbj|BAA14110.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               172-446, + strand, RNAz p=0.978627

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               172-446, + strand, RNAz p=0.978627

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               26-750, gnl|bosTau2|chr28 (29735835-29736557)
               

               
               26-750, gnl|Hg17|chr1 (58809243-58808539)
               

               
               26-750, gnl|Mm7|chr4 (128443771-128452876)
               


               
               914-1644, gnl|bosTau2|chr28 (29736715-29737433)
               

               
               914-1644, gnl|Hg17|chr1 (58808373-58807612)
               

               
               914-1644, gnl|Mm7|chr4 (128455388-128456176)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               26-750, gnl|bosTau2|chr28 (29735835-29736557)
               

               
               26-750, gnl|Hg17|chr1 (58809243-58808539)
               

               
               26-750, gnl|Mm7|chr4 (128443771-128452876)
               


               
               914-1644, gnl|bosTau2|chr28 (29736715-29737433)
               

               
               914-1644, gnl|Hg17|chr1 (58808373-58807612)
               

               
               914-1644, gnl|Mm7|chr4 (128455388-128456176)

Expressed library(ies): 31 entry(ies)

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Expressed library(ies): 31 entry(ies)

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               hea (1.02249)
               

               
               hlv (0.696282)
               

               
               elu (0.385356)
               

               
               nlu (0.383362)
               

               
               sin (0.349895)
               

               
               nco (0.323468)
               

               
               cty (0.31224)
               

               
               med (0.232504)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               nbm (0.198649)
               

               
               col (0.195008)
               

               
               ldo (0.194005)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               cag (0.151194)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               eje (0.0988338)

Expressed library(ies): 31 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (1.02249)
               

               
               hlv (0.696282)
               

               
               elu (0.385356)
               

               
               nlu (0.383362)
               

               
               sin (0.349895)
               

               
               nco (0.323468)
               

               
               cty (0.31224)
               

               
               med (0.232504)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               nbm (0.198649)
               

               
               col (0.195008)
               

               
               ldo (0.194005)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               cag (0.151194)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               eje (0.0988338)

	26-750, gnl\|bosTau2\|chr28 (29735835-29736557)
	26-750, gnl\|Hg17\|chr1 (58809243-58808539)
	26-750, gnl\|Mm7\|chr4 (128443771-128452876)

	914-1644, gnl\|bosTau2\|chr28 (29736715-29737433)
	914-1644, gnl\|Hg17\|chr1 (58808373-58807612)
	914-1644, gnl\|Mm7\|chr4 (128455388-128456176)

	hea (1.02249)
	hlv (0.696282)
	elu (0.385356)
	nlu (0.383362)
	sin (0.349895)
	nco (0.323468)
	cty (0.31224)
	med (0.232504)
	nms (0.213858)
	mas (0.210305)
	tes (0.207814)
	nbm (0.198649)
	col (0.195008)
	ldo (0.194005)
	duo (0.172801)
	fhi (0.169578)
	nje (0.16592)
	cki (0.165235)
	csp (0.161186)
	fco (0.157208)
	tbr (0.154178)
	cag (0.151194)
	nca (0.136874)
	ssp (0.13552)
	pla (0.133672)
	ute (0.132784)
	clu (0.119646)
	ebs (0.118301)
	ecc (0.115035)
	cbl (0.114797)
	eje (0.0988338)