Ss1.1-Thy1-THY010038A08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCAAGGGCTGCCCTCTGAAGAAAGCTCCAGAGAGAAAGCGGAGGGGAAAGAAGCGAGCAG TGGCCTGCAGGTGTGCGGGCTGAGGCCAGGAGTGGCTCACACCCTGACCCCCCACCAGCA ACCCCACCCCCTTGCAGACAAGAGCCACCGCAGCCATGGCGGGCATGCAGACAGCCACGG GGGACTACATCGACTCGTCCTGGGAGCTGCGGGTGTTCGTCGGAGAAGAGGACCCCGAGG CCGAGTCGGTCACCCTCCGGGTCACAGGGGAGTCGCACATCGGTGGGGTGCTCCTGAAGA TTGTGGAGGAGATCAAGCGCAAGCAGGACTGGTCGGACCATGCCATTTGGTGGGAACAGA AAAGGCAGTGGCTGTTGCAGACCCACTGGACACTGGACAAATACGGGATCCTGGCCGACG CCCGCCTCTTCTTCGGGCCTCAGCACCGACCCATCATCCTGCGGCTGCCCAATCGCTGTG CCCTGCGCCTCCGAGCCAGCTTCTCCCAGCCCCTCTTCCAGGCCGTCACTGCCATCTGCC GGCTCCTCAGTATCCGGCACCCTGAGGAGCTGTCTCTGCTCCGGGCCCCTGAGAAGAAGG AGAAGAAGAAGAAGGAGAAGGAGAAGGAGGAGGAGGTGTATGACTTGACCAAGGTCGTCC TGGCCGGGGGTGTGGCACCTGCCTTGTTCCGGGGGATGCCAGCCCACTTCTCAGACAGTG CCCAGACGGAGGCCTGCTACCACATGCTGAGCCGGCCGCAGCCACCGCCAGACCCCCTCC TGCTCCAGCGCCTGCCCCGGCCCGGCTCCCTCTTGGACAAGACCAAGCTCCACAGCAGGT GGCTGGACTCGTCGAGGTGCCTCATGCAGCAGGGCATCAAGGCTGGCGACACACTCTGGC TGCGCTTCAAGTACTACAGCTTCTTTGACCTGGACCCCAAGACTGACCCAGTGCGGCTGA CCCAGCTGTACGAGCAGGCTCGGTGGGACCTGCTGCTGGAGGAGATCGACTGTACCGAGG AGGAGATGATGGTGTTTGCAGCCCTGCAGTACCACATCAACAAGCTGTCCCAGAGCGGGG AGGTGGACGAACCGGCCAGCACAGACCAGGGGCTGGATGACCTGGATGCAGCTCTGAGCA ACCTGGAGGTGAAGCTAGAGGGATCGGCGCCCTCGGACGTGCTGGACAGCCTCACCACCA TCCCAGAACTCCGCGACCATCTCCGGATCTTCCGGCCCCGGAAGCTGACCCTGAAGGGGT ACCGCCAGCACTGGGTGGTGTTCAAGGAGACCACGCTGTCCTACTACAAGAGCCAGGACG AGGCCCCCGGGGACCCCATTCAGCAGCTCAACCTCAAGGGCTGTGAAGTGGTCCCTGATG TCAACGTCTCAGCCCAGAAGTTCTGCATCAAACTCCTGGTACCCTCCCCTGAGGGCATGA GTGAGATCTACCTGCGGTGCCAGGATGAGCAGCAGTATGCCCGCTGGATGGCCGGCTGCC GACTGGCCTCCAAGGGCCGCACCATGGCCGACAGCAGCTACTCCAGCGAGGTGCAGGCCA TCCTAGCCTTCCTCAGCCTGCAGCGGACAGGCGGCGGGGGCTCAGGCAACAACCCTCAGG GCCCTGATGCCTCCACCGAGGGCCTCAACCCCTATGGCCTTGTCGCCCCCCGCTTCCAGC GCAAGTTCAAGGCCAAGCAGCTCACCCCCCGGATCCTGGAAGCCCACCAGAACGTGGCCC AACTCTCGCTGTCTGAGGCCCAGCTGCGCTTCATCCAGTCCTGGCAGTCCTTGCCCGACT TCGGCATCTCCTACGTCGTGGTCAGGTTCAAGGGCAGCCGGAAAGACGAGATCCTGGGCA TTGCCAACAATCGACTGATCCGCATTGACCTGGCCGTGGGGGACGTGGTCAAGACCTGGC GCTTCAGCAACATGCGCCAGTGGAACGTCAACTGGGACATCCGGCAGGTGGCCATCGAGT TTGACGAGCACATCAACGTGGCTTTCAGCTGTGTGTCTGCCAGCTGCCGCACCGTGCACG AGTACATCGGAGGCTACATCTTTCTGTCAACGCGGGAGCGGGCCCGCGGGGAGGAGCTGG ACGAGGACCTCTTCCTGCAGCTCACAGGAGGTCACGAGGCCTTCTGAAGCCCGTCATACT GCCCCTGCCCTGCTCACCACCTGCCACTAAGCCCACACCCATAGGGACTCACCACCCACG CCCTCTCCAGACATGCACCGAGCTGGGCACATTCACCCACTGTCACTGGCCTTGTGCAGA TCAGGGACCCAGCTGGGCCAGACTCTGCCAGCCCCCAGGCTAGGGAGGGTGGGCCCTGAG CTTGCACAGCACCCGCCCTTCCCTTGTCCAAGTGGCCAAGACCAACACCCTTGACCAGGC TGTGGTCCCTGAGCACACAAGGAAGGCTGGCTGCAGCTACAGGAGAATGACTCATAGTTT CAAACTGGAGTTTCTTTTTTGTTGTCTTTTTACATTTTTAAAAAATAAATATTTGAGGAG TTCCCTGTTGGCCGAGGGGATAGGATCTGGCATTGTCACAGCTGTGGCTTGGGTCACTGC TGTGGTGGGGTTCGAGCCCTGGCCCAGGAACTTCCGCATGCCATGGGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCAAGGGCTGCCCTCTGAAGAAAGCTCCAGAGAGAAAGCGGAGGGGAAAGAAGCGAGCAG TGGCCTGCAGGTGTGCGGGCTGAGGCCAGGAGTGGCTCACACCCTGACCCCCCACCAGCA ACCCCACCCCCTTGCAGACAAGAGCCACCGCAGCCATGGCGGGCATGCAGACAGCCACGG GGGACTACATCGACTCGTCCTGGGAGCTGCGGGTGTTCGTCGGAGAAGAGGACCCCGAGG CCGAGTCGGTCACCCTCCGGGTCACAGGGGAGTCGCACATCGGTGGGGTGCTCCTGAAGA TTGTGGAGGAGATCAAGCGCAAGCAGGACTGGTCGGACCATGCCATTTGGTGGGAACAGA AAAGGCAGTGGCTGTTGCAGACCCACTGGACACTGGACAAATACGGGATCCTGGCCGACG CCCGCCTCTTCTTCGGGCCTCAGCACCGACCCATCATCCTGCGGCTGCCCAATCGCTGTG CCCTGCGCCTCCGAGCCAGCTTCTCCCAGCCCCTCTTCCAGGCCGTCACTGCCATCTGCC GGCTCCTCAGTATCCGGCACCCTGAGGAGCTGTCTCTGCTCCGGGCCCCTGAGAAGAAGG AGAAGAAGAAGAAGGAGAAGGAGAAGGAGGAGGAGGTGTATGACTTGACCAAGGTCGTCC TGGCCGGGGGTGTGGCACCTGCCTTGTTCCGGGGGATGCCAGCCCACTTCTCAGACAGTG CCCAGACGGAGGCCTGCTACCACATGCTGAGCCGGCCGCAGCCACCGCCAGACCCCCTCC TGCTCCAGCGCCTGCCCCGGCCCGGCTCCCTCTTGGACAAGACCAAGCTCCACAGCAGGT GGCTGGACTCGTCGAGGTGCCTCATGCAGCAGGGCATCAAGGCTGGCGACACACTCTGGC TGCGCTTCAAGTACTACAGCTTCTTTGACCTGGACCCCAAGACTGACCCAGTGCGGCTGA CCCAGCTGTACGAGCAGGCTCGGTGGGACCTGCTGCTGGAGGAGATCGACTGTACCGAGG AGGAGATGATGGTGTTTGCAGCCCTGCAGTACCACATCAACAAGCTGTCCCAGAGCGGGG AGGTGGACGAACCGGCCAGCACAGACCAGGGGCTGGATGACCTGGATGCAGCTCTGAGCA ACCTGGAGGTGAAGCTAGAGGGATCGGCGCCCTCGGACGTGCTGGACAGCCTCACCACCA TCCCAGAACTCCGCGACCATCTCCGGATCTTCCGGCCCCGGAAGCTGACCCTGAAGGGGT ACCGCCAGCACTGGGTGGTGTTCAAGGAGACCACGCTGTCCTACTACAAGAGCCAGGACG AGGCCCCCGGGGACCCCATTCAGCAGCTCAACCTCAAGGGCTGTGAAGTGGTCCCTGATG TCAACGTCTCAGCCCAGAAGTTCTGCATCAAACTCCTGGTACCCTCCCCTGAGGGCATGA GTGAGATCTACCTGCGGTGCCAGGATGAGCAGCAGTATGCCCGCTGGATGGCCGGCTGCC GACTGGCCTCCAAGGGCCGCACCATGGCCGACAGCAGCTACTCCAGCGAGGTGCAGGCCA TCCTAGCCTTCCTCAGCCTGCAGCGGACAGGCGGCGGGGGCTCAGGCAACAACCCTCAGG GCCCTGATGCCTCCACCGAGGGCCTCAACCCCTATGGCCTTGTCGCCCCCCGCTTCCAGC GCAAGTTCAAGGCCAAGCAGCTCACCCCCCGGATCCTGGAAGCCCACCAGAACGTGGCCC AACTCTCGCTGTCTGAGGCCCAGCTGCGCTTCATCCAGTCCTGGCAGTCCTTGCCCGACT TCGGCATCTCCTACGTCGTGGTCAGGTTCAAGGGCAGCCGGAAAGACGAGATCCTGGGCA TTGCCAACAATCGACTGATCCGCATTGACCTGGCCGTGGGGGACGTGGTCAAGACCTGGC GCTTCAGCAACATGCGCCAGTGGAACGTCAACTGGGACATCCGGCAGGTGGCCATCGAGT TTGACGAGCACATCAACGTGGCTTTCAGCTGTGTGTCTGCCAGCTGCCGCACCGTGCACG AGTACATCGGAGGCTACATCTTTCTGTCAACGCGGGAGCGGGCCCGCGGGGAGGAGCTGG ACGAGGACCTCTTCCTGCAGCTCACAGGAGGTCACGAGGCCTTCTGAAGCCCGTCATACT GCCCCTGCCCTGCTCACCACCTGCCACTAAGCCCACACCCATAGGGACTCACCACCCACG CCCTCTCCAGACATGCACCGAGCTGGGCACATTCACCCACTGTCACTGGCCTTGTGCAGA TCAGGGACCCAGCTGGGCCAGACTCTGCCAGCCCCCAGGCTAGGGAGGGTGGGCCCTGAG CTTGCACAGCACCCGCCCTTCCCTTGTCCAAGTGGCCAAGACCAACACCCTTGACCAGGC TGTGGTCCCTGAGCACACAAGGAAGGCTGGCTGCAGCTACAGGAGAATGACTCATAGTTT CAAACTGGAGTTTCTTTTTTGTTGTCTTTTTACATTTTTAAAAAATAAATATTTGAGGAG TTCCCTGTTGGCCGAGGGGATAGGATCTGGCATTGTCACAGCTGTGGCTTGGGTCACTGC TGTGGTGGGGTTCGAGCCCTGGCCCAGGAACTTCCGCATGCCATGGGC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 61 entry(ies) | More info |
| Aligned organism(s): 61 entry(ies) | Help | Less info |
| 141-315, gnl|bosTau2|chr29 (33326313-33326487) | |
| 141-315, gnl|Hg17|chr11 (63731397-63731572) | |
| 141-315, gnl|Mm7|chr19 (6838708-6838530) | |
| 324-551, gnl|bosTau2|chr13 (32784669-32784896) | |
| 324-551, gnl|Hg17|chr20 (6044683-6044456) | |
| 324-551, gnl|Mm7|chr2 (132680360-132680133) | |
| 669-841, gnl|bosTau2|chr29 (33330580-33330752) | |
| 669-841, gnl|Hg17|chr11 (63735322-63735494) | |
| 669-841, gnl|Mm7|chr19 (6834093-6833921) | |
| 1042-1185, gnl|bosTau2|chr29 (33341158-33341301) | |
| 1042-1185, gnl|Hg17|chr11 (63743565-63743707) | |
| 1042-1185, gnl|Mm7|chr19 (6823172-6823032) | |
| 1231-1360, gnl|bosTau2|chr29 (33341536-33341665) | |
| 1231-1360, gnl|canFam2|chr18 (55862482-55862401) | |
| 1231-1360, gnl|echTel1|scaffold_108189 (631-550) | |
| 1231-1360, gnl|Hg17|chr11 (63743935-63744064) | |
| 1231-1360, gnl|hg17|chr17 (21437223-21437304) | |
| 1231-1360, gnl|mm7|chr19 (6822810-6822729) | |
| 1231-1360, gnl|Mm7|chr19 (6822813-6822685) | |
| 1231-1360, gnl|panTro1|chr19 (21843262-21843343) | |
| 1231-1360, gnl|rheMac2|chr14 (10208999-10208918) | |
| 1231-1360, gnl|rn3|chr1 (209835591-209835510) | |
| 1231-1360, gnl|tetNig1|chr10 (7987846-7987764) | |
| 1699-1827, gnl|bosTau2|chr13 (32823435-32823563) | |
| 1699-1827, gnl|canFam2|chr24 (18777383-18777208) | |
| 1699-1827, gnl|danRer3|chrNA (172562464-172562627) | |
| 1699-1827, gnl|dasNov1|scaffold_67909 (860-976) | |
| 1699-1827, gnl|echTel1|scaffold_283546 (1191-1363) | |
| 1699-1827, gnl|fr1|chrUn (204216061-204216193) | |
| 1699-1827, gnl|galGal2|chr14 (16931689-16931859) | |
| 1699-1827, gnl|hg17|chr20 (6012674-6012845) | |
| 1699-1827, gnl|Hg17|chr20 (6012813-6012685) | |
| 1699-1827, gnl|loxAfr1|scaffold_4143 (12804-12968) | |
| 1699-1827, gnl|mm7|chr2 (132656031-132656206) | |
| 1699-1827, gnl|Mm7|chr2 (132656170-132656042) | |
| 1699-1827, gnl|monDom2|scaffold_1 (36363742-36363895) | |
| 1699-1827, gnl|oryCun1|scaffold_184592 (7406-7536) | |
| 1699-1827, gnl|panTro1|chr21 (5895477-5895648) | |
| 1699-1827, gnl|rheMac2|chr10 (39384674-39384845) | |
| 1699-1827, gnl|rn3|chr3 (120613757-120613929) | |
| 1699-1827, gnl|tetNig1|chrUn_random (130959114-130959249) | |
| 1699-1827, gnl|xenTro1|scaffold_239 (51798-51961) | |
| 1965-2138, gnl|bosTau2|chr13 (32828446-32828619) | |
| 1965-2138, gnl|canFam2|chr24 (18780736-18780535) | |
| 1965-2138, gnl|danRer3|chrNA (172557748-172557932) | |
| 1965-2138, gnl|dasNov1|scaffold_103873 (1141-941) | |
| 1965-2138, gnl|echTel1|scaffold_201300 (2709-2510) | |
| 1965-2138, gnl|fr1|chrUn (204215577-204215761) | |
| 1965-2138, gnl|galGal2|chr14 (16929006-16929212) | |
| 1965-2138, gnl|hg17|chr20 (6005805-6006005) | |
| 1965-2138, gnl|Hg17|chr20 (6005996-6005823) | |
| 1965-2138, gnl|loxAfr1|scaffold_12589 (31072-30890) | |
| 1965-2138, gnl|mm7|chr2 (132647505-132647705) | |
| 1965-2138, gnl|Mm7|chr2 (132647697-132647524) | |
| 1965-2138, gnl|monDom2|scaffold_1 (36347876-36348060) | |
| 1965-2138, gnl|oryCun1|scaffold_100223 (3894-4103) | |
| 1965-2138, gnl|panTro1|chr21 (5887874-5888074) | |
| 1965-2138, gnl|rheMac2|chr10 (39378682-39378882) | |
| 1965-2138, gnl|rn3|chr3 (120607500-120607701) | |
| 1965-2138, gnl|tetNig1|chrUn_random (130958620-130958799) | |
| 1965-2138, gnl|xenTro1|scaffold_239 (50625-50809) |
| Aligned organism(s): 61 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 141-315, gnl|bosTau2|chr29 (33326313-33326487) | |
| 141-315, gnl|Hg17|chr11 (63731397-63731572) | |
| 141-315, gnl|Mm7|chr19 (6838708-6838530) | |
| 324-551, gnl|bosTau2|chr13 (32784669-32784896) | |
| 324-551, gnl|Hg17|chr20 (6044683-6044456) | |
| 324-551, gnl|Mm7|chr2 (132680360-132680133) | |
| 669-841, gnl|bosTau2|chr29 (33330580-33330752) | |
| 669-841, gnl|Hg17|chr11 (63735322-63735494) | |
| 669-841, gnl|Mm7|chr19 (6834093-6833921) | |
| 1042-1185, gnl|bosTau2|chr29 (33341158-33341301) | |
| 1042-1185, gnl|Hg17|chr11 (63743565-63743707) | |
| 1042-1185, gnl|Mm7|chr19 (6823172-6823032) | |
| 1231-1360, gnl|bosTau2|chr29 (33341536-33341665) | |
| 1231-1360, gnl|canFam2|chr18 (55862482-55862401) | |
| 1231-1360, gnl|echTel1|scaffold_108189 (631-550) | |
| 1231-1360, gnl|Hg17|chr11 (63743935-63744064) | |
| 1231-1360, gnl|hg17|chr17 (21437223-21437304) | |
| 1231-1360, gnl|mm7|chr19 (6822810-6822729) | |
| 1231-1360, gnl|Mm7|chr19 (6822813-6822685) | |
| 1231-1360, gnl|panTro1|chr19 (21843262-21843343) | |
| 1231-1360, gnl|rheMac2|chr14 (10208999-10208918) | |
| 1231-1360, gnl|rn3|chr1 (209835591-209835510) | |
| 1231-1360, gnl|tetNig1|chr10 (7987846-7987764) | |
| 1699-1827, gnl|bosTau2|chr13 (32823435-32823563) | |
| 1699-1827, gnl|canFam2|chr24 (18777383-18777208) | |
| 1699-1827, gnl|danRer3|chrNA (172562464-172562627) | |
| 1699-1827, gnl|dasNov1|scaffold_67909 (860-976) | |
| 1699-1827, gnl|echTel1|scaffold_283546 (1191-1363) | |
| 1699-1827, gnl|fr1|chrUn (204216061-204216193) | |
| 1699-1827, gnl|galGal2|chr14 (16931689-16931859) | |
| 1699-1827, gnl|hg17|chr20 (6012674-6012845) | |
| 1699-1827, gnl|Hg17|chr20 (6012813-6012685) | |
| 1699-1827, gnl|loxAfr1|scaffold_4143 (12804-12968) | |
| 1699-1827, gnl|mm7|chr2 (132656031-132656206) | |
| 1699-1827, gnl|Mm7|chr2 (132656170-132656042) | |
| 1699-1827, gnl|monDom2|scaffold_1 (36363742-36363895) | |
| 1699-1827, gnl|oryCun1|scaffold_184592 (7406-7536) | |
| 1699-1827, gnl|panTro1|chr21 (5895477-5895648) | |
| 1699-1827, gnl|rheMac2|chr10 (39384674-39384845) | |
| 1699-1827, gnl|rn3|chr3 (120613757-120613929) | |
| 1699-1827, gnl|tetNig1|chrUn_random (130959114-130959249) | |
| 1699-1827, gnl|xenTro1|scaffold_239 (51798-51961) | |
| 1965-2138, gnl|bosTau2|chr13 (32828446-32828619) | |
| 1965-2138, gnl|canFam2|chr24 (18780736-18780535) | |
| 1965-2138, gnl|danRer3|chrNA (172557748-172557932) | |
| 1965-2138, gnl|dasNov1|scaffold_103873 (1141-941) | |
| 1965-2138, gnl|echTel1|scaffold_201300 (2709-2510) | |
| 1965-2138, gnl|fr1|chrUn (204215577-204215761) | |
| 1965-2138, gnl|galGal2|chr14 (16929006-16929212) | |
| 1965-2138, gnl|hg17|chr20 (6005805-6006005) | |
| 1965-2138, gnl|Hg17|chr20 (6005996-6005823) | |
| 1965-2138, gnl|loxAfr1|scaffold_12589 (31072-30890) | |
| 1965-2138, gnl|mm7|chr2 (132647505-132647705) | |
| 1965-2138, gnl|Mm7|chr2 (132647697-132647524) | |
| 1965-2138, gnl|monDom2|scaffold_1 (36347876-36348060) | |
| 1965-2138, gnl|oryCun1|scaffold_100223 (3894-4103) | |
| 1965-2138, gnl|panTro1|chr21 (5887874-5888074) | |
| 1965-2138, gnl|rheMac2|chr10 (39378682-39378882) | |
| 1965-2138, gnl|rn3|chr3 (120607500-120607701) | |
| 1965-2138, gnl|tetNig1|chrUn_random (130958620-130958799) | |
| 1965-2138, gnl|xenTro1|scaffold_239 (50625-50809) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| csp (0.805932) | |
| clu (0.717875) | |
| cag (0.604778) | |
| hyp (0.285673) | |
| cly (0.241284) | |
| cli (0.152812) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| med (0.116252) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| eje (0.0988338) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| csp (0.805932) | |
| clu (0.717875) | |
| cag (0.604778) | |
| hyp (0.285673) | |
| cly (0.241284) | |
| cli (0.152812) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| med (0.116252) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| eje (0.0988338) |