Non-Coding RNA Search

Ss1.1-Thy1-THY010038B06.5

Sequence:


               
               TGAGGACTTATACTCCTCCCCTAGATAGAAAAGCCCCATGCTCATCCTTGGTCCTAGCAT
ACATCGGGTTCACCATCAGTGATTATGGAATAAGAGTTGAACAAAGAGCCCTCCTTCCCA
CTGACATTACCTTGTAGAGTGTTCCTAGAGCACCTCATGGTTCTTGAATGAAGCTCTGCA
GGAGAAGCCAGTGGGCAGGTGAAACAATCTTGTCATAGTGGCCCTTTCTGCCCCTAGGCC
CCAGTGCAGAGAGCCAGCGACCATCTAATGCCTACAATGGAGACCTCAACGGGCTCCTGG
TCCCAGACCCCCTCTGCTCAGGTGATGGTACTTCAGCAAACAAGCCTGGTCTCCGAGCCA
TGCCACCTATTAATCTGCAGGAAAAGCAGGTCATGTGAGTGTCTGGGAGATGGCAGGGGT
GGTGATGGGGTCTTTGAGACATTTACTGACTGAAGGCATAAGATGAAGGGAGGGGGTCCA
GCAGCCTTTGCTACTTCCCCACTAGATGACCTAGGGTGGAGCACTTAACCACACTGAGTT
TGTACTAGGACGATGAGCAGGGACAAGCTCAAGAAGTTGGCCTAGATCTGAAGTTTGGGC
TACTGGTTTAGCATGGAAGTAGCGCCATTCCCAAGGAGGGAGGTGAGCAGGGGGAGCTGT
GGGTTTGGGGAATAGTGGACCAGGCAGAGCTGGACATCTGAGATTTGACACCTTCACCAG
AATGGCTGTATCCTCTCCCCCTCCCAACCCTGCCCATCAAGACTTTGGGTGAACAAGAGT
TGACATTTGTGGAGAGTTCCTGTTGTGGCTCAGTGGGTTAAGAGTCTGACTAGTATGCAT
GAGGATGTGGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAGGACTTATACTCCTCCCCTAGATAGAAAAGCCCCATGCTCATCCTTGGTCCTAGCAT
ACATCGGGTTCACCATCAGTGATTATGGAATAAGAGTTGAACAAAGAGCCCTCCTTCCCA
CTGACATTACCTTGTAGAGTGTTCCTAGAGCACCTCATGGTTCTTGAATGAAGCTCTGCA
GGAGAAGCCAGTGGGCAGGTGAAACAATCTTGTCATAGTGGCCCTTTCTGCCCCTAGGCC
CCAGTGCAGAGAGCCAGCGACCATCTAATGCCTACAATGGAGACCTCAACGGGCTCCTGG
TCCCAGACCCCCTCTGCTCAGGTGATGGTACTTCAGCAAACAAGCCTGGTCTCCGAGCCA
TGCCACCTATTAATCTGCAGGAAAAGCAGGTCATGTGAGTGTCTGGGAGATGGCAGGGGT
GGTGATGGGGTCTTTGAGACATTTACTGACTGAAGGCATAAGATGAAGGGAGGGGGTCCA
GCAGCCTTTGCTACTTCCCCACTAGATGACCTAGGGTGGAGCACTTAACCACACTGAGTT
TGTACTAGGACGATGAGCAGGGACAAGCTCAAGAAGTTGGCCTAGATCTGAAGTTTGGGC
TACTGGTTTAGCATGGAAGTAGCGCCATTCCCAAGGAGGGAGGTGAGCAGGGGGAGCTGT
GGGTTTGGGGAATAGTGGACCAGGCAGAGCTGGACATCTGAGATTTGACACCTTCACCAG
AATGGCTGTATCCTCTCCCCCTCCCAACCCTGCCCATCAAGACTTTGGGTGAACAAGAGT
TGACATTTGTGGAGAGTTCCTGTTGTGGCTCAGTGGGTTAAGAGTCTGACTAGTATGCAT
GAGGATGTGGGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               351-469, + strand, RNAz p=0.992901

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               351-469, + strand, RNAz p=0.992901

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC043616, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC043616, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-529, gnl|bosTau2|chr18 (14984512-14983993)
               

               
               1-529, gnl|Hg17|chr16 (66467118-66467647)
               

               
               1-529, gnl|Mm7|chr8 (104483144-104483649)
               


               
               559-780, gnl|bosTau2|chr18 (14983985-14983767)
               

               
               559-780, gnl|Hg17|chr16 (66467655-66467865)
               

               
               559-780, gnl|Mm7|chr8 (104483673-104483865)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-529, gnl|bosTau2|chr18 (14984512-14983993)
               

               
               1-529, gnl|Hg17|chr16 (66467118-66467647)
               

               
               1-529, gnl|Mm7|chr8 (104483144-104483649)
               


               
               559-780, gnl|bosTau2|chr18 (14983985-14983767)
               

               
               559-780, gnl|Hg17|chr16 (66467655-66467865)
               

               
               559-780, gnl|Mm7|chr8 (104483673-104483865)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cov (0.132153)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.132153)

	1-529, gnl\|bosTau2\|chr18 (14984512-14983993)
	1-529, gnl\|Hg17\|chr16 (66467118-66467647)
	1-529, gnl\|Mm7\|chr8 (104483144-104483649)

	559-780, gnl\|bosTau2\|chr18 (14983985-14983767)
	559-780, gnl\|Hg17\|chr16 (66467655-66467865)
	559-780, gnl\|Mm7\|chr8 (104483673-104483865)