Ss1.1-Thy1-THY010038B10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTTCTACCTCTGCTTCTGCCTCTACCTCCCCCGGGTTGCTTTCAGCATGGAGGAAATTT ATGCCAAGTTTGTGTCACAGAAAATCAGCAAGACCCGCTGGCGACCGCTATCTTCGGGGA GCCTGCAGACGGCGGAGACCTTCGCCACGGGCTCTTGGGACAATGAGGAAAATTATGTTT CACTGTGGTCTATTGGAGATTTGGGGAACGTGGACTCTGATGGAGGATTTGAAGGAGACC ATCAGTTATTGTGTGACATCAGACACCATGGTGATGTAATGGATTTACAATTTTTTGACC AGGAAAGAATTGTAGCTGCTTCATCAACAGGATGTGTAACAGTTTTCCTTCACCATCCAA ATAACCAGACTCTGTCAGTCAGCCAGCAGTGGACAACAGCTCACTACCACGCGGGTCCAG GCAGTCCTTCCTGTAGCAGTGCACCATGCACAGGTGTTGTCTGCAACAGCCCAGAAATTG TCACAGTTGGAGAAGATGGTCGAATAAATCTCTTCAGAGCTGATTACAAGGAAGCTATAA AAACTATAGACAATGCAGATAGCAGTACACTCCATGCTGTAACCTTCCTTCGAACTCCTG AGATTCTTACAGTAAATTCAATTGGACAGTTAAAAATATGGGATTTTAGACAACAAGGAA ATGAACCCTCTCAGATATTATCACTGACCGGTGACCGAGCGCCGCTCCACTGTGTGGATA GACATCCCAACCAGCAGCATGTGGTAGCTACTGGTGGCCAGGATGGAATGTTGAGTATTT GGGATGTAAGACAAGGTACAATGCCTGTGTCTCTACTGAAGGCTCATGAAGCTGAAATGT GGGAAGTTCACT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTTCTACCTCTGCTTCTGCCTCTACCTCCCCCGGGTTGCTTTCAGCATGGAGGAAATTT ATGCCAAGTTTGTGTCACAGAAAATCAGCAAGACCCGCTGGCGACCGCTATCTTCGGGGA GCCTGCAGACGGCGGAGACCTTCGCCACGGGCTCTTGGGACAATGAGGAAAATTATGTTT CACTGTGGTCTATTGGAGATTTGGGGAACGTGGACTCTGATGGAGGATTTGAAGGAGACC ATCAGTTATTGTGTGACATCAGACACCATGGTGATGTAATGGATTTACAATTTTTTGACC AGGAAAGAATTGTAGCTGCTTCATCAACAGGATGTGTAACAGTTTTCCTTCACCATCCAA ATAACCAGACTCTGTCAGTCAGCCAGCAGTGGACAACAGCTCACTACCACGCGGGTCCAG GCAGTCCTTCCTGTAGCAGTGCACCATGCACAGGTGTTGTCTGCAACAGCCCAGAAATTG TCACAGTTGGAGAAGATGGTCGAATAAATCTCTTCAGAGCTGATTACAAGGAAGCTATAA AAACTATAGACAATGCAGATAGCAGTACACTCCATGCTGTAACCTTCCTTCGAACTCCTG AGATTCTTACAGTAAATTCAATTGGACAGTTAAAAATATGGGATTTTAGACAACAAGGAA ATGAACCCTCTCAGATATTATCACTGACCGGTGACCGAGCGCCGCTCCACTGTGTGGATA GACATCCCAACCAGCAGCATGTGGTAGCTACTGGTGGCCAGGATGGAATGTTGAGTATTT GGGATGTAAGACAAGGTACAATGCCTGTGTCTCTACTGAAGGCTCATGAAGCTGAAATGT GGGAAGTTCACT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 681-835, + strand, RNAz p=0.73308 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 681-835, + strand, RNAz p=0.73308 |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 9-168, gnl|bosTau2|chr7 (68125886-68126044) | |
| 9-168, gnl|Hg17|chr6 (150159787-150159625) | |
| 9-168, gnl|Mm7|chr10 (7367774-7367930) | |
| 367-549, gnl|bosTau2|chr7 (68128543-68128725) | |
| 367-549, gnl|canFam2|chr1 (43532023-43532222) | |
| 367-549, gnl|canFam2|chr1 (43532038-43532213) | |
| 367-549, gnl|danRer3|chr20 (1730280-1730104) | |
| 367-549, gnl|danRer3|chr20 (1730260-1730113) | |
| 367-549, gnl|echTel1|scaffold_161521 (9366-9165) | |
| 367-549, gnl|echTel1|scaffold_161521 (9349-9174) | |
| 367-549, gnl|fr1|chrUn (177164599-177164772) | |
| 367-549, gnl|fr1|chrUn (177164610-177164767) | |
| 367-549, gnl|galGal2|chr3 (47175780-47175978) | |
| 367-549, gnl|hg17|chr4 (106382282-106382457) | |
| 367-549, gnl|hg17|chr6 (150155629-150155830) | |
| 367-549, gnl|Hg17|chr6 (150155822-150155640) | |
| 367-549, gnl|loxAfr1|scaffold_17069 (11539-11741) | |
| 367-549, gnl|loxAfr1|scaffold_17069 (11556-11732) | |
| 367-549, gnl|mm7|chr10 (7371374-7371179) | |
| 367-549, gnl|mm7|chr10 (7371363-7371188) | |
| 367-549, gnl|Mm7|chr10 (7371185-7371367) | |
| 367-549, gnl|monDom2|scaffold_0 (56324578-56324378) | |
| 367-549, gnl|monDom2|scaffold_7 (26099703-26099878) | |
| 367-549, gnl|oryCun1|scaffold_211315 (142245-142084) | |
| 367-549, gnl|oryCun1|scaffold_211315 (142244-142083) | |
| 367-549, gnl|panTro1|chr3_random (5412750-5412925) | |
| 367-549, gnl|panTro1|chr5 (153574148-153574349) | |
| 367-549, gnl|rheMac2|chr4 (113544371-113544170) | |
| 367-549, gnl|rheMac2|chr5 (98171600-98171775) | |
| 367-549, gnl|tetNig1|chr14 (1867066-1867240) | |
| 367-549, gnl|tetNig1|chr14 (1867073-1867229) | |
| 367-549, gnl|xenTro1|scaffold_1738 (59027-58845) | |
| 681-850, gnl|bosTau2|chr25 (4169750-4169922) | |
| 681-850, gnl|Hg17|chr4 (106382139-106381974) | |
| 681-850, gnl|Mm7|chr10 (7375254-7376500) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 9-168, gnl|bosTau2|chr7 (68125886-68126044) | |
| 9-168, gnl|Hg17|chr6 (150159787-150159625) | |
| 9-168, gnl|Mm7|chr10 (7367774-7367930) | |
| 367-549, gnl|bosTau2|chr7 (68128543-68128725) | |
| 367-549, gnl|canFam2|chr1 (43532023-43532222) | |
| 367-549, gnl|canFam2|chr1 (43532038-43532213) | |
| 367-549, gnl|danRer3|chr20 (1730280-1730104) | |
| 367-549, gnl|danRer3|chr20 (1730260-1730113) | |
| 367-549, gnl|echTel1|scaffold_161521 (9366-9165) | |
| 367-549, gnl|echTel1|scaffold_161521 (9349-9174) | |
| 367-549, gnl|fr1|chrUn (177164599-177164772) | |
| 367-549, gnl|fr1|chrUn (177164610-177164767) | |
| 367-549, gnl|galGal2|chr3 (47175780-47175978) | |
| 367-549, gnl|hg17|chr4 (106382282-106382457) | |
| 367-549, gnl|hg17|chr6 (150155629-150155830) | |
| 367-549, gnl|Hg17|chr6 (150155822-150155640) | |
| 367-549, gnl|loxAfr1|scaffold_17069 (11539-11741) | |
| 367-549, gnl|loxAfr1|scaffold_17069 (11556-11732) | |
| 367-549, gnl|mm7|chr10 (7371374-7371179) | |
| 367-549, gnl|mm7|chr10 (7371363-7371188) | |
| 367-549, gnl|Mm7|chr10 (7371185-7371367) | |
| 367-549, gnl|monDom2|scaffold_0 (56324578-56324378) | |
| 367-549, gnl|monDom2|scaffold_7 (26099703-26099878) | |
| 367-549, gnl|oryCun1|scaffold_211315 (142245-142084) | |
| 367-549, gnl|oryCun1|scaffold_211315 (142244-142083) | |
| 367-549, gnl|panTro1|chr3_random (5412750-5412925) | |
| 367-549, gnl|panTro1|chr5 (153574148-153574349) | |
| 367-549, gnl|rheMac2|chr4 (113544371-113544170) | |
| 367-549, gnl|rheMac2|chr5 (98171600-98171775) | |
| 367-549, gnl|tetNig1|chr14 (1867066-1867240) | |
| 367-549, gnl|tetNig1|chr14 (1867073-1867229) | |
| 367-549, gnl|xenTro1|scaffold_1738 (59027-58845) | |
| 681-850, gnl|bosTau2|chr25 (4169750-4169922) | |
| 681-850, gnl|Hg17|chr4 (106382139-106381974) | |
| 681-850, gnl|Mm7|chr10 (7375254-7376500) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.207814) | |
| tbr (0.154178) | |
| eru (0.120048) |