Ss1.1-Thy1-THY010038D01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGAATATTTATTGCCTCCAACAATTAGAGGATTGGTACCCACATGCAGCCCAGTTGCAA CCCCTGTGTTTCTGCCGTAGGTGCCAGGTGGGACAGCCAGTCAGGAACCATTGTTGACGC CCACCTCAAAGAGTTAAGGTCCGCGATGCCAGTCATCTTTGCAAAAGCCATCCCCATGGA CAGACAGGAAACCAAACACACCTACGAGTGTCCTGTGTATAGAACCCAAATGAGGGGCCC CAACTATGTGTGGACCTTCAGGCTGAAGAGCAAAGAGAAGACGGCCAAGTGGGTTCTGGC GGGCGTGGCTCTGCTGCTAGAAGCATAAAACAGCCCTGGCGCTGGGACTCCTCTTCCTCC AGGCTCAGCTGGAGCACAGTGAGGCTCTGCCATTGTTCCCATGCACAGTAATTATTCTTT CTAAGAGGCATAAAACATTCCGGCTTATGTAACTTTTAAGTAACTTAAATGTGCATTTTT GTTTAAAATACCATCCTTGAAAAGTAGAGAAGGGGGACAAAAAGAACCAAATGTAGAAAA ACATATAGGACACCTACTGAGAATCTTATTCATGTTTTTTTTTTTAGCTTTCCCTAATTC CCCTTGACGCCCTCATCCCGCAACACAAAAAAGTACAGTATTTCTCACATTTACGTTGAA CCTCAAAAACAATGTGGTTGGAAGTCTCCCAATCTACACGTGGTATCTAGTTCTTATAGA CATTAAAATCTTTAAAAATTAGCCCTTATATTCTTTTAAAAGAGAGAAGCAATTGGCCCC AGGCAGTGGGCAAATTCTGAAGAGCCAGCCACTCCTGCTGCCTAGCAGCCCTCTAAGGCC TCCAGTGTCAGTCATGTGACAGTCCACTTTTCAAGTTTTTAGTAAAAATAAGACTCTAGT TCTGCGGTTAATTGCACTTTGTAATTTAGGGGAACATTCTTCAATATAAATTTCCAATGA CCCAGAGCAGGTTAAGTAAAGAGCAACTGCATGGTCTGAACTATGGTCACTCATGATAAG GTAAACTCAAGGGGATGTGACCCCTGTAACAGCCTGGCCTCGAGTTACTGTTTGGGAGGT CGAAGGTCAATGCAACAGACATAATTCAACAGTGTCAAAGGCAAGAGCTGCTTATACAAT ATTTCCTCTGGAACCTACCTGAAACTTTAACCCCACCCCATTTAAACCGTGCTTTTTAAT CATCTGCAGATGCTTTTAACAATTCTGTATCCAAACAGGCCTGGGTATACATGTGTGGAG ATTCCTCTGTTGTCCTCCTGAGAAATCCTTTGTGAAGCGTAAACAATCTTTAAAAAATAG TATTTAGATCTACAAAAAATAATCTATATAAAAATACAACCATAAGAAATCTTAGGCACA AATGGCATGTCTTGCGGAGTAGTCCCCGGTGAGTTGGCTGATTCTTCCTTCTCTTAATTA TCTTTTACCAGCTGCTTTTGCAGGCTCTCCAGATACTCCTTAACGTTATTATAACCGTAA AACTTGGCCAGATGAATGAGGATGCCTGTGGCACAGCGGCCGTCACGCCTCCGACAGTAA CTGCAGTTGCAGATGCCTCGGCAGGGAGGACAGATCCAATCGGGGTCTAGTAGCGCTGAT CTCACGTCCTCCCCGTAGCGATTCCGCAGGCACGGCCCGCAAAACTGCCCTCGCACCCCG CCGCAGCTCTGGTTCCGACACACCGTCTTGGTGTCGATGGTCTTCTGGCGACACTGATGG CAGGTGTTTCCCAGAACTTTATCATAGATTTTATCTCGAACGGTTATGGCCACATTTTCT AAGTCCTCTTCGGTGATATCCTCCACTGGCCGAAAAGAAGATACACGGTGACGTCGTCTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGAATATTTATTGCCTCCAACAATTAGAGGATTGGTACCCACATGCAGCCCAGTTGCAA CCCCTGTGTTTCTGCCGTAGGTGCCAGGTGGGACAGCCAGTCAGGAACCATTGTTGACGC CCACCTCAAAGAGTTAAGGTCCGCGATGCCAGTCATCTTTGCAAAAGCCATCCCCATGGA CAGACAGGAAACCAAACACACCTACGAGTGTCCTGTGTATAGAACCCAAATGAGGGGCCC CAACTATGTGTGGACCTTCAGGCTGAAGAGCAAAGAGAAGACGGCCAAGTGGGTTCTGGC GGGCGTGGCTCTGCTGCTAGAAGCATAAAACAGCCCTGGCGCTGGGACTCCTCTTCCTCC AGGCTCAGCTGGAGCACAGTGAGGCTCTGCCATTGTTCCCATGCACAGTAATTATTCTTT CTAAGAGGCATAAAACATTCCGGCTTATGTAACTTTTAAGTAACTTAAATGTGCATTTTT GTTTAAAATACCATCCTTGAAAAGTAGAGAAGGGGGACAAAAAGAACCAAATGTAGAAAA ACATATAGGACACCTACTGAGAATCTTATTCATGTTTTTTTTTTTAGCTTTCCCTAATTC CCCTTGACGCCCTCATCCCGCAACACAAAAAAGTACAGTATTTCTCACATTTACGTTGAA CCTCAAAAACAATGTGGTTGGAAGTCTCCCAATCTACACGTGGTATCTAGTTCTTATAGA CATTAAAATCTTTAAAAATTAGCCCTTATATTCTTTTAAAAGAGAGAAGCAATTGGCCCC AGGCAGTGGGCAAATTCTGAAGAGCCAGCCACTCCTGCTGCCTAGCAGCCCTCTAAGGCC TCCAGTGTCAGTCATGTGACAGTCCACTTTTCAAGTTTTTAGTAAAAATAAGACTCTAGT TCTGCGGTTAATTGCACTTTGTAATTTAGGGGAACATTCTTCAATATAAATTTCCAATGA CCCAGAGCAGGTTAAGTAAAGAGCAACTGCATGGTCTGAACTATGGTCACTCATGATAAG GTAAACTCAAGGGGATGTGACCCCTGTAACAGCCTGGCCTCGAGTTACTGTTTGGGAGGT CGAAGGTCAATGCAACAGACATAATTCAACAGTGTCAAAGGCAAGAGCTGCTTATACAAT ATTTCCTCTGGAACCTACCTGAAACTTTAACCCCACCCCATTTAAACCGTGCTTTTTAAT CATCTGCAGATGCTTTTAACAATTCTGTATCCAAACAGGCCTGGGTATACATGTGTGGAG ATTCCTCTGTTGTCCTCCTGAGAAATCCTTTGTGAAGCGTAAACAATCTTTAAAAAATAG TATTTAGATCTACAAAAAATAATCTATATAAAAATACAACCATAAGAAATCTTAGGCACA AATGGCATGTCTTGCGGAGTAGTCCCCGGTGAGTTGGCTGATTCTTCCTTCTCTTAATTA TCTTTTACCAGCTGCTTTTGCAGGCTCTCCAGATACTCCTTAACGTTATTATAACCGTAA AACTTGGCCAGATGAATGAGGATGCCTGTGGCACAGCGGCCGTCACGCCTCCGACAGTAA CTGCAGTTGCAGATGCCTCGGCAGGGAGGACAGATCCAATCGGGGTCTAGTAGCGCTGAT CTCACGTCCTCCCCGTAGCGATTCCGCAGGCACGGCCCGCAAAACTGCCCTCGCACCCCG CCGCAGCTCTGGTTCCGACACACCGTCTTGGTGTCGATGGTCTTCTGGCGACACTGATGG CAGGTGTTTCCCAGAACTTTATCATAGATTTTATCTCGAACGGTTATGGCCACATTTTCT AAGTCCTCTTCGGTGATATCCTCCACTGGCCGAAAAGAAGATACACGGTGACGTCGTCTA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 453-573, gnl|bosTau2|chr6 (50319493-50319607) | |
| 453-573, gnl|Mm7|chr5 (92236959-92236798) | |
| 457-566, gnl|bosTau2|chr5 (74104341-74104452) | |
| 589-786, gnl|bosTau2|chr21 (47697219-47697003) | |
| 824-975, gnl|bosTau2|chr21 (47697004-47696850) | |
| 824-975, gnl|Mm7|chr12 (115614523-115614350) | |
| 1123-1466, gnl|bosTau2|chr4 (11133988-11133659) | |
| 1123-1466, gnl|Hg17|chr7 (21714831-21715212) | |
| 1123-1466, gnl|Mm7|chr12 (115614271-115613929) | |
| 1603-1752, gnl|bosTau2|chr4 (11132282-11132133) | |
| 1603-1752, gnl|canFam2|chr14 (38745812-38745963) | |
| 1603-1752, gnl|canFam2|chr14 (38745810-38745967) | |
| 1603-1752, gnl|danRer3|chr2 (11262724-11262570) | |
| 1603-1752, gnl|danRer3|chr9 (7430544-7430390) | |
| 1603-1752, gnl|dasNov1|scaffold_6269 (51322-51476) | |
| 1603-1752, gnl|dasNov1|scaffold_6269 (51320-51481) | |
| 1603-1752, gnl|echTel1|scaffold_318696 (89088-89243) | |
| 1603-1752, gnl|echTel1|scaffold_318696 (89086-89242) | |
| 1603-1752, gnl|fr1|chrUn (7436035-7435880) | |
| 1603-1752, gnl|fr1|chrUn (7436037-7435879) | |
| 1603-1752, gnl|galGal2|chr2 (29855645-29855812) | |
| 1603-1752, gnl|hg17|chr7 (21716966-21717124) | |
| 1603-1752, gnl|Hg17|chr7 (21716969-21717118) | |
| 1603-1752, gnl|hg17|chr8 (43648731-43648890) | |
| 1603-1752, gnl|loxAfr1|scaffold_14673 (40548-40703) | |
| 1603-1752, gnl|loxAfr1|scaffold_14673 (40546-40702) | |
| 1603-1752, gnl|mm7|chr12 (115612190-115612039) | |
| 1603-1752, gnl|mm7|chr12 (115612192-115612035) | |
| 1603-1752, gnl|Mm7|chr12 (115612187-115612038) | |
| 1603-1752, gnl|monDom2|scaffold_57 (5075205-5075047) | |
| 1603-1752, gnl|oryCun1|scaffold_197290 (46948-47099) | |
| 1603-1752, gnl|oryCun1|scaffold_197290 (46946-47100) | |
| 1603-1752, gnl|panTro1|chr6 (22747957-22748115) | |
| 1603-1752, gnl|panTro1|chr7 (45125011-45125170) | |
| 1603-1752, gnl|rheMac2|chr3 (104293724-104293573) | |
| 1603-1752, gnl|rheMac2|chr3 (104293726-104293568) | |
| 1603-1752, gnl|rn3|chr6 (145194920-145194763) | |
| 1603-1752, gnl|rn3|chrX (122425698-122425539) | |
| 1603-1752, gnl|tetNig1|chr2 (11329551-11329706) | |
| 1603-1752, gnl|tetNig1|chr2 (11329549-11329703) | |
| 1603-1752, gnl|xenTro1|scaffold_23 (283079-282924) | |
| 1603-1752, gnl|xenTro1|scaffold_23 (283083-282925) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 453-573, gnl|bosTau2|chr6 (50319493-50319607) | |
| 453-573, gnl|Mm7|chr5 (92236959-92236798) | |
| 457-566, gnl|bosTau2|chr5 (74104341-74104452) | |
| 589-786, gnl|bosTau2|chr21 (47697219-47697003) | |
| 824-975, gnl|bosTau2|chr21 (47697004-47696850) | |
| 824-975, gnl|Mm7|chr12 (115614523-115614350) | |
| 1123-1466, gnl|bosTau2|chr4 (11133988-11133659) | |
| 1123-1466, gnl|Hg17|chr7 (21714831-21715212) | |
| 1123-1466, gnl|Mm7|chr12 (115614271-115613929) | |
| 1603-1752, gnl|bosTau2|chr4 (11132282-11132133) | |
| 1603-1752, gnl|canFam2|chr14 (38745812-38745963) | |
| 1603-1752, gnl|canFam2|chr14 (38745810-38745967) | |
| 1603-1752, gnl|danRer3|chr2 (11262724-11262570) | |
| 1603-1752, gnl|danRer3|chr9 (7430544-7430390) | |
| 1603-1752, gnl|dasNov1|scaffold_6269 (51322-51476) | |
| 1603-1752, gnl|dasNov1|scaffold_6269 (51320-51481) | |
| 1603-1752, gnl|echTel1|scaffold_318696 (89088-89243) | |
| 1603-1752, gnl|echTel1|scaffold_318696 (89086-89242) | |
| 1603-1752, gnl|fr1|chrUn (7436035-7435880) | |
| 1603-1752, gnl|fr1|chrUn (7436037-7435879) | |
| 1603-1752, gnl|galGal2|chr2 (29855645-29855812) | |
| 1603-1752, gnl|hg17|chr7 (21716966-21717124) | |
| 1603-1752, gnl|Hg17|chr7 (21716969-21717118) | |
| 1603-1752, gnl|hg17|chr8 (43648731-43648890) | |
| 1603-1752, gnl|loxAfr1|scaffold_14673 (40548-40703) | |
| 1603-1752, gnl|loxAfr1|scaffold_14673 (40546-40702) | |
| 1603-1752, gnl|mm7|chr12 (115612190-115612039) | |
| 1603-1752, gnl|mm7|chr12 (115612192-115612035) | |
| 1603-1752, gnl|Mm7|chr12 (115612187-115612038) | |
| 1603-1752, gnl|monDom2|scaffold_57 (5075205-5075047) | |
| 1603-1752, gnl|oryCun1|scaffold_197290 (46948-47099) | |
| 1603-1752, gnl|oryCun1|scaffold_197290 (46946-47100) | |
| 1603-1752, gnl|panTro1|chr6 (22747957-22748115) | |
| 1603-1752, gnl|panTro1|chr7 (45125011-45125170) | |
| 1603-1752, gnl|rheMac2|chr3 (104293724-104293573) | |
| 1603-1752, gnl|rheMac2|chr3 (104293726-104293568) | |
| 1603-1752, gnl|rn3|chr6 (145194920-145194763) | |
| 1603-1752, gnl|rn3|chrX (122425698-122425539) | |
| 1603-1752, gnl|tetNig1|chr2 (11329551-11329706) | |
| 1603-1752, gnl|tetNig1|chr2 (11329549-11329703) | |
| 1603-1752, gnl|xenTro1|scaffold_23 (283079-282924) | |
| 1603-1752, gnl|xenTro1|scaffold_23 (283083-282925) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| pro (0.512033) | |
| amn (0.417711) | |
| ecc (0.23007) | |
| sto (0.179824) | |
| mcp (0.170648) | |
| csk (0.140746) | |
| cst (0.140036) | |
| ova (0.129132) | |
| ese (0.126502) | |
| eep (0.122564) | |
| cly (0.120642) | |
| cbl (0.114797) | |
| eje (0.0988338) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pro (0.512033) | |
| amn (0.417711) | |
| ecc (0.23007) | |
| sto (0.179824) | |
| mcp (0.170648) | |
| csk (0.140746) | |
| cst (0.140036) | |
| ova (0.129132) | |
| ese (0.126502) | |
| eep (0.122564) | |
| cly (0.120642) | |
| cbl (0.114797) | |
| eje (0.0988338) |