Ss1.1-Thy1-THY010039A11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCGATGTGGCGAGGCTGTAAGCTGAGCTCCTCCGGGAGTCGATTTTTAGGCGGGCTTAG GTCGGTGTACCGGGGCACACGGGCTGACTGTCCTCGCTTAACCACGTCGGCGGTTTGTTC AAAGAATCAGCTCAGTTGGACTCTACAAATTAAACCATGGGTTGTCAATGAATACAGAAT CATGTGGTTCAAATCCTGTAGCATGAATTTTGCCTTCTTGAATAGAATGAAAAGTTACAG GCTCCCTTGGATAAGACCATACAGTACTTCCCGGTCCACTGTAGACAGCAATGAGGTGAA GACCTTCCTGGCCTTGGCTCACAGGTGGTGGGATGAGCAAGGAGTGTATGCACCTCTTCA TTCTATGAACGACCTGAGGGTGCCGTTTATTAGAGACAATCTTTTAAAAACAGTTGCTAA TCACCAGCCTGGAAAACCTTTGTCTGGGATGAAGATTCTTGATGTTGGCTGTGGTGGTGG ATTGTTAACAGAACCTCTAGGGCGGCTTGGGGCATCAGTTATTGGAATTGATCCTGTGGA TGAGAACATTAAAACAGCACAGCACCATAAATCATTTGACCCAGTCCTGGATAAGAGGAT AGAGTACAGAGCATGCTCCCTGGAAGAGATTGTGGAAGAAACTGCAGAAACATTTGATGC TGTTGTAGCTTCTGAAGTTGTAGAACATGTGATTGATCTAGAAACATTTATACAGTGCTG CTGTCAAGTGCTAAAACCTGGTGGTTCTTTATTCATTACTACAATCAACAAAACCCAGCT ATCTTATGCCTTGGGAATTGTTTTTGCAGAGCAAATTGCAGGTATTGTACCAAAAGGTAC TCATACATGGGAAAAGTTTGTTTCACCTGAAAAGCTAGAGAGCATTCTGGAATCAAATGG TCTGTCAGTTCAAACGGTGACAGGAATGCTCTACAACCCCTTCTCAGGTTACTGGCACTG GAGTGAAAACACCAGCCTTAACTATGCAGCTTATGCTGTGAAATCCAGCGTCCAGGAACA CTCAGGGCCTGAGTTTGCTTTAAAGGGAGAAAGAGAAGAGCTTCGAGCTGAAGCCTCCAC CAATTCAGGTGTGCGTGAAGAGTTGAAGAAATAAATTGTTTCTAAGGACTGTAGTAAAAC GGCTTGAAAGTCTCATGTTTACAGTAACACAAAATATACTGTTTGTCTTTTGAGACAAGA TCTAAAGAAAGGAAAGTCAATAAAAACTAGATAAAGTCAATAAAAACTAGCTTAAATAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCGATGTGGCGAGGCTGTAAGCTGAGCTCCTCCGGGAGTCGATTTTTAGGCGGGCTTAG GTCGGTGTACCGGGGCACACGGGCTGACTGTCCTCGCTTAACCACGTCGGCGGTTTGTTC AAAGAATCAGCTCAGTTGGACTCTACAAATTAAACCATGGGTTGTCAATGAATACAGAAT CATGTGGTTCAAATCCTGTAGCATGAATTTTGCCTTCTTGAATAGAATGAAAAGTTACAG GCTCCCTTGGATAAGACCATACAGTACTTCCCGGTCCACTGTAGACAGCAATGAGGTGAA GACCTTCCTGGCCTTGGCTCACAGGTGGTGGGATGAGCAAGGAGTGTATGCACCTCTTCA TTCTATGAACGACCTGAGGGTGCCGTTTATTAGAGACAATCTTTTAAAAACAGTTGCTAA TCACCAGCCTGGAAAACCTTTGTCTGGGATGAAGATTCTTGATGTTGGCTGTGGTGGTGG ATTGTTAACAGAACCTCTAGGGCGGCTTGGGGCATCAGTTATTGGAATTGATCCTGTGGA TGAGAACATTAAAACAGCACAGCACCATAAATCATTTGACCCAGTCCTGGATAAGAGGAT AGAGTACAGAGCATGCTCCCTGGAAGAGATTGTGGAAGAAACTGCAGAAACATTTGATGC TGTTGTAGCTTCTGAAGTTGTAGAACATGTGATTGATCTAGAAACATTTATACAGTGCTG CTGTCAAGTGCTAAAACCTGGTGGTTCTTTATTCATTACTACAATCAACAAAACCCAGCT ATCTTATGCCTTGGGAATTGTTTTTGCAGAGCAAATTGCAGGTATTGTACCAAAAGGTAC TCATACATGGGAAAAGTTTGTTTCACCTGAAAAGCTAGAGAGCATTCTGGAATCAAATGG TCTGTCAGTTCAAACGGTGACAGGAATGCTCTACAACCCCTTCTCAGGTTACTGGCACTG GAGTGAAAACACCAGCCTTAACTATGCAGCTTATGCTGTGAAATCCAGCGTCCAGGAACA CTCAGGGCCTGAGTTTGCTTTAAAGGGAGAAAGAGAAGAGCTTCGAGCTGAAGCCTCCAC CAATTCAGGTGTGCGTGAAGAGTTGAAGAAATAAATTGTTTCTAAGGACTGTAGTAAAAC GGCTTGAAAGTCTCATGTTTACAGTAACACAAAATATACTGTTTGTCTTTTGAGACAAGA TCTAAAGAAAGGAAAGTCAATAAAAACTAGATAAAGTCAATAAAAACTAGCTTAAATAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 737-896, + strand, RNAz p=0.594514 | |
| 936-1052, - strand, RNAz p=0.761824 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 737-896, + strand, RNAz p=0.594514 | |
| 936-1052, - strand, RNAz p=0.761824 |
| Aligned organism(s): 50 entry(ies) | More info |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
| 113-241, gnl|bosTau2|chr9 (33674978-33674850) | |
| 113-241, gnl|canFam2|chr12 (60604108-60604289) | |
| 113-241, gnl|dasNov1|scaffold_30051 (6414-6262) | |
| 113-241, gnl|echTel1|scaffold_295394 (4539-4720) | |
| 113-241, gnl|hg17|chr6 (99938250-99938430) | |
| 113-241, gnl|Hg17|chr6 (99938422-99938294) | |
| 113-241, gnl|mm7|chr4 (21896639-21896459) | |
| 113-241, gnl|Mm7|chr4 (21896465-21896593) | |
| 113-241, gnl|monDom2|scaffold_0 (124525576-124525388) | |
| 113-241, gnl|oryCun1|scaffold_213419 (56316-56146) | |
| 113-241, gnl|panTro1|chr5 (101924416-101924597) | |
| 113-241, gnl|rheMac2|chr4 (95325908-95326094) | |
| 113-241, gnl|rn3|chr5 (36657056-36657237) | |
| 392-493, gnl|bosTau2|chr9 (33671090-33670989) | |
| 392-493, gnl|canFam2|chr12 (60600562-60600669) | |
| 392-493, gnl|danRer3|chr16 (43760097-43760201) | |
| 392-493, gnl|fr1|chrUn (260838980-260839086) | |
| 392-493, gnl|galGal2|chr3 (69875026-69874919) | |
| 392-493, gnl|hg17|chr6 (99931978-99932085) | |
| 392-493, gnl|Hg17|chr6 (99932086-99931983) | |
| 392-493, gnl|mm7|chr4 (21902821-21902714) | |
| 392-493, gnl|Mm7|chr4 (21902713-21902814) | |
| 392-493, gnl|monDom2|scaffold_0 (124532829-124532711) | |
| 392-493, gnl|panTro1|chr5 (101918187-101918294) | |
| 392-493, gnl|rheMac2|chr4 (95319931-95320039) | |
| 392-493, gnl|rn3|chr5 (36652610-36652717) | |
| 392-493, gnl|tetNig1|chr8 (1391415-1391522) | |
| 494-735, gnl|bosTau2|chr9 (33666200-33665959) | |
| 494-735, gnl|canFam2|chr12 (60599428-60599716) | |
| 494-735, gnl|dasNov1|scaffold_6882 (53828-54123) | |
| 494-735, gnl|echTel1|scaffold_196276 (3981-4267) | |
| 494-735, gnl|fr1|chrUn (260838018-260838291) | |
| 494-735, gnl|galGal2|chr3 (69876375-69876090) | |
| 494-735, gnl|hg17|chr6 (99930537-99930820) | |
| 494-735, gnl|Hg17|chr6 (99930779-99930538) | |
| 494-735, gnl|loxAfr1|scaffold_178434 (1452-1733) | |
| 494-735, gnl|mm7|chr4 (21904165-21903885) | |
| 494-735, gnl|Mm7|chr4 (21903921-21904162) | |
| 494-735, gnl|monDom2|scaffold_0 (124534034-124533752) | |
| 494-735, gnl|oryCun1|scaffold_192692 (54898-55179) | |
| 494-735, gnl|panTro1|chr5 (101916751-101917034) | |
| 494-735, gnl|rheMac2|chr4 (95318438-95318719) | |
| 494-735, gnl|rn3|chr5 (36650888-36651168) | |
| 494-735, gnl|xenTro1|scaffold_164 (1899174-1899458) | |
| 737-896, gnl|bosTau2|chr9 (33662754-33662595) | |
| 737-896, gnl|Hg17|chr6 (99926184-99926025) | |
| 737-896, gnl|Mm7|chr4 (21912140-21912299) | |
| 897-1226, gnl|bosTau2|chr9 (33661319-33660987) | |
| 897-1226, gnl|Hg17|chr6 (99924417-99924085) | |
| 897-1226, gnl|Mm7|chr4 (21914076-21914404) |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 113-241, gnl|bosTau2|chr9 (33674978-33674850) | |
| 113-241, gnl|canFam2|chr12 (60604108-60604289) | |
| 113-241, gnl|dasNov1|scaffold_30051 (6414-6262) | |
| 113-241, gnl|echTel1|scaffold_295394 (4539-4720) | |
| 113-241, gnl|hg17|chr6 (99938250-99938430) | |
| 113-241, gnl|Hg17|chr6 (99938422-99938294) | |
| 113-241, gnl|mm7|chr4 (21896639-21896459) | |
| 113-241, gnl|Mm7|chr4 (21896465-21896593) | |
| 113-241, gnl|monDom2|scaffold_0 (124525576-124525388) | |
| 113-241, gnl|oryCun1|scaffold_213419 (56316-56146) | |
| 113-241, gnl|panTro1|chr5 (101924416-101924597) | |
| 113-241, gnl|rheMac2|chr4 (95325908-95326094) | |
| 113-241, gnl|rn3|chr5 (36657056-36657237) | |
| 392-493, gnl|bosTau2|chr9 (33671090-33670989) | |
| 392-493, gnl|canFam2|chr12 (60600562-60600669) | |
| 392-493, gnl|danRer3|chr16 (43760097-43760201) | |
| 392-493, gnl|fr1|chrUn (260838980-260839086) | |
| 392-493, gnl|galGal2|chr3 (69875026-69874919) | |
| 392-493, gnl|hg17|chr6 (99931978-99932085) | |
| 392-493, gnl|Hg17|chr6 (99932086-99931983) | |
| 392-493, gnl|mm7|chr4 (21902821-21902714) | |
| 392-493, gnl|Mm7|chr4 (21902713-21902814) | |
| 392-493, gnl|monDom2|scaffold_0 (124532829-124532711) | |
| 392-493, gnl|panTro1|chr5 (101918187-101918294) | |
| 392-493, gnl|rheMac2|chr4 (95319931-95320039) | |
| 392-493, gnl|rn3|chr5 (36652610-36652717) | |
| 392-493, gnl|tetNig1|chr8 (1391415-1391522) | |
| 494-735, gnl|bosTau2|chr9 (33666200-33665959) | |
| 494-735, gnl|canFam2|chr12 (60599428-60599716) | |
| 494-735, gnl|dasNov1|scaffold_6882 (53828-54123) | |
| 494-735, gnl|echTel1|scaffold_196276 (3981-4267) | |
| 494-735, gnl|fr1|chrUn (260838018-260838291) | |
| 494-735, gnl|galGal2|chr3 (69876375-69876090) | |
| 494-735, gnl|hg17|chr6 (99930537-99930820) | |
| 494-735, gnl|Hg17|chr6 (99930779-99930538) | |
| 494-735, gnl|loxAfr1|scaffold_178434 (1452-1733) | |
| 494-735, gnl|mm7|chr4 (21904165-21903885) | |
| 494-735, gnl|Mm7|chr4 (21903921-21904162) | |
| 494-735, gnl|monDom2|scaffold_0 (124534034-124533752) | |
| 494-735, gnl|oryCun1|scaffold_192692 (54898-55179) | |
| 494-735, gnl|panTro1|chr5 (101916751-101917034) | |
| 494-735, gnl|rheMac2|chr4 (95318438-95318719) | |
| 494-735, gnl|rn3|chr5 (36650888-36651168) | |
| 494-735, gnl|xenTro1|scaffold_164 (1899174-1899458) | |
| 737-896, gnl|bosTau2|chr9 (33662754-33662595) | |
| 737-896, gnl|Hg17|chr6 (99926184-99926025) | |
| 737-896, gnl|Mm7|chr4 (21912140-21912299) | |
| 897-1226, gnl|bosTau2|chr9 (33661319-33660987) | |
| 897-1226, gnl|Hg17|chr6 (99924417-99924085) | |
| 897-1226, gnl|Mm7|chr4 (21914076-21914404) |
| Expressed library(ies): 36 entry(ies) | More info |
| Expressed library(ies): 36 entry(ies) | Help | Less info |
| cte (2.04918) | |
| sto (0.719295) | |
| fce (0.543183) | |
| pro (0.512033) | |
| tes (0.415628) | |
| che (0.408942) | |
| sag (0.36543) | |
| tbr (0.308356) | |
| lin (0.291206) | |
| ssp (0.271039) | |
| lyg (0.266205) | |
| ova (0.258264) | |
| ese (0.253004) | |
| bla (0.248694) | |
| med (0.232504) | |
| mas (0.210305) | |
| hea (0.204499) | |
| ldo (0.194005) | |
| cmu (0.186393) | |
| nep (0.183925) | |
| fbs (0.175346) | |
| cut (0.169924) | |
| lun (0.150489) | |
| isp (0.150376) | |
| fat (0.147427) | |
| liv (0.146284) | |
| csk (0.140746) | |
| ste (0.135208) | |
| kid (0.129735) | |
| sug (0.127291) | |
| thg (0.126791) | |
| spc (0.113366) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 36 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (2.04918) | |
| sto (0.719295) | |
| fce (0.543183) | |
| pro (0.512033) | |
| tes (0.415628) | |
| che (0.408942) | |
| sag (0.36543) | |
| tbr (0.308356) | |
| lin (0.291206) | |
| ssp (0.271039) | |
| lyg (0.266205) | |
| ova (0.258264) | |
| ese (0.253004) | |
| bla (0.248694) | |
| med (0.232504) | |
| mas (0.210305) | |
| hea (0.204499) | |
| ldo (0.194005) | |
| cmu (0.186393) | |
| nep (0.183925) | |
| fbs (0.175346) | |
| cut (0.169924) | |
| lun (0.150489) | |
| isp (0.150376) | |
| fat (0.147427) | |
| liv (0.146284) | |
| csk (0.140746) | |
| ste (0.135208) | |
| kid (0.129735) | |
| sug (0.127291) | |
| thg (0.126791) | |
| spc (0.113366) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| jej (0.0989218) | |
| eje (0.0988338) |