Ss1.1-Thy1-THY010039B12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAACATTCTTCTTAGATTGTTTAATTATTTTTCAGAGAAACACAGGATTCCAACCACCAA GTGACAATACCCCAAAATCGTCCAACATGGTTTTCTGCACTTATCTGGAACTTTCATGTT CTTCCTCCAAAAGAAGTGCTCAATTCTCACTGCCAATGCTCTTAGCAGATTCACTTTTCA CCTGGTGAGGCCCTCAGGTCGACACTGTGCCCCTTCAACACCACGTGCAACGTCGGATAT TCAATGACCACTTTGCTCCGCAGATTGTCAAGCAGACTTTTGTCAGGATCCAGTTCATAG TATCTCACTGAATTTTGCTGCATATGTTCAACCTTCATCAATATTTGGACCCCGGTCTGA GAGCGAATATAGGCTTTCAACCTTTGACGAATTACAGGATCAGACTTTTCAGGATCAATG TAAGGTCTTAGAATTTCATTAATGGTTCTATCATCTGGTACTCTCTTCTCTACGTACACG GCTTGACTCTGAGGAAACTGCAGCTTCACGTGCCAGCAAAACTGTCGTTTTTTCTTATCA AAAAATGTTGAATTTTCTTTCCTTTTCGTGAATCCAATGGGTAGAAGTTTTAAGTCAATA CCTTGCTTTCGAGCACGATTTTTCATAAAGTACATATGTTTATTGCTTATGGGTCTCTTC AAGAAAGCATCTCTAGAAATATGGTCTGCTGTTCTTGCCACATCTTCTAAAAATCGGTAA TCACTCAGGAGATTCATTTCAGTAAACTGCTGTATTGAAACATATGCAGTTTTATCTCGA ACTCCATTACACGTCAGGTCTGCTTTGTGTTTCTTCACACAGGGCAAACTGCAGGAATGT CGCATACAACGCGGACATCTGTACTTTGCTTCTTCTGTACCACAAGTTTCACATCTGGAC ATGGCCAGTTTCCGCTTGGAGCCCACTGGGGGATGCATCTGAGGCTCTTCTTTCACCTGT GCATCGGCCATCACCTCTTCTTTCGGGACATTCTTCTCTTCTTTTACACACATTCCATCC ACTCTTTCCTCCGTTTTTATGTTCTGACCTAGAAACACCTCCTCCCGTTTAATCTCCAAG CTGTCTTTCTTCTCTTCCGTCACTTCTAGCCAGTCCGTCACTTCTTCCTTCACCTTCACC TTCTCTTCCTTAACCTCTGGCTCTTCCTCCTCCTCTTCTTTTACCATCAGATTGCTATCC GTCTCCTGCTTCACCTCCAGGGTGCCTGGTTTTTCCTCTTTCACCTCGGGCCCGTCCTCC ACCTCCTGCTTCGCCCACGGGTCATTCAACACACCTTGTTCCGTTTCTGACCAGTCCACT ACTTCCTGCTTCACGACCGTTAGGTCCACCCGCATCCCTGCCCTTCGTCCACCTCCTGCG CCTTCCCCTATC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAACATTCTTCTTAGATTGTTTAATTATTTTTCAGAGAAACACAGGATTCCAACCACCAA GTGACAATACCCCAAAATCGTCCAACATGGTTTTCTGCACTTATCTGGAACTTTCATGTT CTTCCTCCAAAAGAAGTGCTCAATTCTCACTGCCAATGCTCTTAGCAGATTCACTTTTCA CCTGGTGAGGCCCTCAGGTCGACACTGTGCCCCTTCAACACCACGTGCAACGTCGGATAT TCAATGACCACTTTGCTCCGCAGATTGTCAAGCAGACTTTTGTCAGGATCCAGTTCATAG TATCTCACTGAATTTTGCTGCATATGTTCAACCTTCATCAATATTTGGACCCCGGTCTGA GAGCGAATATAGGCTTTCAACCTTTGACGAATTACAGGATCAGACTTTTCAGGATCAATG TAAGGTCTTAGAATTTCATTAATGGTTCTATCATCTGGTACTCTCTTCTCTACGTACACG GCTTGACTCTGAGGAAACTGCAGCTTCACGTGCCAGCAAAACTGTCGTTTTTTCTTATCA AAAAATGTTGAATTTTCTTTCCTTTTCGTGAATCCAATGGGTAGAAGTTTTAAGTCAATA CCTTGCTTTCGAGCACGATTTTTCATAAAGTACATATGTTTATTGCTTATGGGTCTCTTC AAGAAAGCATCTCTAGAAATATGGTCTGCTGTTCTTGCCACATCTTCTAAAAATCGGTAA TCACTCAGGAGATTCATTTCAGTAAACTGCTGTATTGAAACATATGCAGTTTTATCTCGA ACTCCATTACACGTCAGGTCTGCTTTGTGTTTCTTCACACAGGGCAAACTGCAGGAATGT CGCATACAACGCGGACATCTGTACTTTGCTTCTTCTGTACCACAAGTTTCACATCTGGAC ATGGCCAGTTTCCGCTTGGAGCCCACTGGGGGATGCATCTGAGGCTCTTCTTTCACCTGT GCATCGGCCATCACCTCTTCTTTCGGGACATTCTTCTCTTCTTTTACACACATTCCATCC ACTCTTTCCTCCGTTTTTATGTTCTGACCTAGAAACACCTCCTCCCGTTTAATCTCCAAG CTGTCTTTCTTCTCTTCCGTCACTTCTAGCCAGTCCGTCACTTCTTCCTTCACCTTCACC TTCTCTTCCTTAACCTCTGGCTCTTCCTCCTCCTCTTCTTTTACCATCAGATTGCTATCC GTCTCCTGCTTCACCTCCAGGGTGCCTGGTTTTTCCTCTTTCACCTCGGGCCCGTCCTCC ACCTCCTGCTTCGCCCACGGGTCATTCAACACACCTTGTTCCGTTTCTGACCAGTCCACT ACTTCCTGCTTCACGACCGTTAGGTCCACCCGCATCCCTGCCCTTCGTCCACCTCCTGCG CCTTCCCCTATC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 710-834, + strand, RNAz p=0.994014 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 710-834, + strand, RNAz p=0.994014 |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 6-181, gnl|bosTau2|chr3 (44004560-44004384) | |
| 6-181, gnl|Hg17|chr1 (85831618-85831803) | |
| 6-181, gnl|Mm7|chr3 (145501280-145501098) | |
| 532-635, gnl|bosTau2|chr5 (41501906-41502009) | |
| 532-635, gnl|canFam2|chr6 (65406837-65406762) | |
| 532-635, gnl|dasNov1|scaffold_240168 (1382-1457) | |
| 532-635, gnl|echTel1|scaffold_313415 (358-433) | |
| 532-635, gnl|fr1|chrUn (116046277-116046332) | |
| 532-635, gnl|galGal2|chr8 (16494883-16494808) | |
| 532-635, gnl|hg17|chr1 (85879891-85879966) | |
| 532-635, gnl|Hg17|chr1 (85879861-85879964) | |
| 532-635, gnl|mm7|chr3 (145479768-145479693) | |
| 532-635, gnl|Mm7|chr3 (145479796-145479693) | |
| 532-635, gnl|monDom2|scaffold_16 (1050768-1050693) | |
| 532-635, gnl|oryCun1|scaffold_201956 (85150-85075) | |
| 532-635, gnl|panTro1|chr1 (84566111-84566186) | |
| 532-635, gnl|rheMac2|chr1 (88478289-88478364) | |
| 532-635, gnl|rn3|chr2 (243739479-243739404) | |
| 532-635, gnl|tetNig1|chr1 (16354722-16354777) | |
| 532-635, gnl|xenTro1|scaffold_264 (1202883-1202808) | |
| 710-834, gnl|bosTau2|chr5 (41509152-41509276) | |
| 710-834, gnl|Hg17|chr1 (85883941-85884065) | |
| 710-834, gnl|Mm7|chr3 (145475534-145475410) | |
| 895-1377, gnl|bosTau2|chr5 (41510557-41511039) | |
| 895-1377, gnl|Hg17|chr1 (85885333-85885803) | |
| 895-1377, gnl|Mm7|chr3 (145474160-145473707) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 6-181, gnl|bosTau2|chr3 (44004560-44004384) | |
| 6-181, gnl|Hg17|chr1 (85831618-85831803) | |
| 6-181, gnl|Mm7|chr3 (145501280-145501098) | |
| 532-635, gnl|bosTau2|chr5 (41501906-41502009) | |
| 532-635, gnl|canFam2|chr6 (65406837-65406762) | |
| 532-635, gnl|dasNov1|scaffold_240168 (1382-1457) | |
| 532-635, gnl|echTel1|scaffold_313415 (358-433) | |
| 532-635, gnl|fr1|chrUn (116046277-116046332) | |
| 532-635, gnl|galGal2|chr8 (16494883-16494808) | |
| 532-635, gnl|hg17|chr1 (85879891-85879966) | |
| 532-635, gnl|Hg17|chr1 (85879861-85879964) | |
| 532-635, gnl|mm7|chr3 (145479768-145479693) | |
| 532-635, gnl|Mm7|chr3 (145479796-145479693) | |
| 532-635, gnl|monDom2|scaffold_16 (1050768-1050693) | |
| 532-635, gnl|oryCun1|scaffold_201956 (85150-85075) | |
| 532-635, gnl|panTro1|chr1 (84566111-84566186) | |
| 532-635, gnl|rheMac2|chr1 (88478289-88478364) | |
| 532-635, gnl|rn3|chr2 (243739479-243739404) | |
| 532-635, gnl|tetNig1|chr1 (16354722-16354777) | |
| 532-635, gnl|xenTro1|scaffold_264 (1202883-1202808) | |
| 710-834, gnl|bosTau2|chr5 (41509152-41509276) | |
| 710-834, gnl|Hg17|chr1 (85883941-85884065) | |
| 710-834, gnl|Mm7|chr3 (145475534-145475410) | |
| 895-1377, gnl|bosTau2|chr5 (41510557-41511039) | |
| 895-1377, gnl|Hg17|chr1 (85885333-85885803) | |
| 895-1377, gnl|Mm7|chr3 (145474160-145473707) |
| Expressed library(ies): 22 entry(ies) | More info |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
| cte (0.58548) | |
| mgp (0.461361) | |
| csk (0.422238) | |
| liv (0.292569) | |
| cbe (0.239234) | |
| pan (0.23596) | |
| tes (0.207814) | |
| hea (0.204499) | |
| fcc (0.197785) | |
| sag (0.182715) | |
| fty (0.17584) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| fco (0.157208) | |
| ski (0.146735) | |
| spl (0.143184) | |
| kid (0.129735) | |
| ova (0.129132) | |
| thg (0.126791) | |
| bla (0.124347) | |
| spc (0.113366) |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (0.58548) | |
| mgp (0.461361) | |
| csk (0.422238) | |
| liv (0.292569) | |
| cbe (0.239234) | |
| pan (0.23596) | |
| tes (0.207814) | |
| hea (0.204499) | |
| fcc (0.197785) | |
| sag (0.182715) | |
| fty (0.17584) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| fco (0.157208) | |
| ski (0.146735) | |
| spl (0.143184) | |
| kid (0.129735) | |
| ova (0.129132) | |
| thg (0.126791) | |
| bla (0.124347) | |
| spc (0.113366) |